Non-Coding RNA Search

Ss1.1-Liv1-LVR010004H08.5

Sequence:


               
               AAACCTACTTTCTTCATGACGGAGGAGTAGGCAGAAAGGGATTGAGGAGCTACCAAAACT
ACCAAAGTGATCTTACTTCTCAATCACTGGACTGTGCGCTAACTCTATTCTGGACATGTG
TGGTCTCAGATTCATCACCGTGCTAGTTGAGTTACTTCTTTGCTGCTTCCTGCTACACGC
TGTGGATGCCATTTCATATGGAAACAAGACAAAATTCTTGGTGCATCTTCCTTCATCCTT
GGGATCCTGGCCACCTTCCTCAGACCCCTTGTCTTGCGAGACCCTGCTCCCCAAATCCCT
GCCTGGCTTCACCCACATGGCCCCTCTACCCAAGTTCCTGATAGGCCTGTCACTGATGAT
TGCTCTGGAGAAAGCTGGCTGTCAAGCTGATGTACAGGTCCTGAAGCTTCAGCTCTACCG
CCAGGGGGGTATAAATGCTACAGAGATGCTTATCAGACATCTTCAAGAACTTGAGAAAGG
CAGAAGCTCAGGTAGGGGAGTATCAGCGGATGCCCTGTCTTCTGCTCTGCAGCAGTGGGC
CGAGGAGCAGACAAGCCCAAAGAGGGCTCGTCGATCCCTCTCCATCAAGGACTGCGAGCA
TGAGAAGGAGCAGAGTGTGCACAATATAGTCCAGCTATTGCCGGGAGTGGGAACCTTCTA
CAACCTGGGCACGGCTTTGTATTACGCTGTTCAGAACTGCTCCGACAAGGCCAAGGAAAG
AGGCCGAGATGGGGTCATAGATCTGGGTTATGACCTCCTGACAGCCATGGCTGGATCGTC
AGGGGGGCCCTGGGGAATACTGATCAGTACTTCACTTAAACCTGTAGTGAAGTCTGGGAT
TCATCGTGTGATCCAGTATTACAATGAGAGAGAGGTGAAAACCCCTCCACCAGAGACCAG
CAAGGAGGTCTTGGGGAGCACCATAGCCATGGGTGACCTGGAAGAAACAGCTACCGTGAC
CCCTTTGGTGTCAGAAGTAGTAAGTTCACCTCCTTACTGGTGGTGGACCTTATTCAAGGG
CTACAACTCAGATCCTGGCTTTGGGAATCCTGCGATATAAAAGAAGGTGGTAAACACATT
GGCTAGATCTAATATTCTGACAAGTTTGTATGTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCTACTTTCTTCATGACGGAGGAGTAGGCAGAAAGGGATTGAGGAGCTACCAAAACT
ACCAAAGTGATCTTACTTCTCAATCACTGGACTGTGCGCTAACTCTATTCTGGACATGTG
TGGTCTCAGATTCATCACCGTGCTAGTTGAGTTACTTCTTTGCTGCTTCCTGCTACACGC
TGTGGATGCCATTTCATATGGAAACAAGACAAAATTCTTGGTGCATCTTCCTTCATCCTT
GGGATCCTGGCCACCTTCCTCAGACCCCTTGTCTTGCGAGACCCTGCTCCCCAAATCCCT
GCCTGGCTTCACCCACATGGCCCCTCTACCCAAGTTCCTGATAGGCCTGTCACTGATGAT
TGCTCTGGAGAAAGCTGGCTGTCAAGCTGATGTACAGGTCCTGAAGCTTCAGCTCTACCG
CCAGGGGGGTATAAATGCTACAGAGATGCTTATCAGACATCTTCAAGAACTTGAGAAAGG
CAGAAGCTCAGGTAGGGGAGTATCAGCGGATGCCCTGTCTTCTGCTCTGCAGCAGTGGGC
CGAGGAGCAGACAAGCCCAAAGAGGGCTCGTCGATCCCTCTCCATCAAGGACTGCGAGCA
TGAGAAGGAGCAGAGTGTGCACAATATAGTCCAGCTATTGCCGGGAGTGGGAACCTTCTA
CAACCTGGGCACGGCTTTGTATTACGCTGTTCAGAACTGCTCCGACAAGGCCAAGGAAAG
AGGCCGAGATGGGGTCATAGATCTGGGTTATGACCTCCTGACAGCCATGGCTGGATCGTC
AGGGGGGCCCTGGGGAATACTGATCAGTACTTCACTTAAACCTGTAGTGAAGTCTGGGAT
TCATCGTGTGATCCAGTATTACAATGAGAGAGAGGTGAAAACCCCTCCACCAGAGACCAG
CAAGGAGGTCTTGGGGAGCACCATAGCCATGGGTGACCTGGAAGAAACAGCTACCGTGAC
CCCTTTGGTGTCAGAAGTAGTAAGTTCACCTCCTTACTGGTGGTGGACCTTATTCAAGGG
CTACAACTCAGATCCTGGCTTTGGGAATCCTGCGATATAAAAGAAGGTGGTAAACACATT
GGCTAGATCTAATATTCTGACAAGTTTGTATGTGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61816742|ref|XP_588271.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61816742|ref|XP_588271.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               455-614, - strand, RNAz p=0.988686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-614, - strand, RNAz p=0.988686

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-1072, gnl|bosTau2|chr5 (33287367-33288337)
               

               
               102-1072, gnl|Hg17|chr12 (55042237-55041264)
               

               
               102-1072, gnl|Mm7|chr10 (127770495-127771434)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-1072, gnl|bosTau2|chr5 (33287367-33288337)
               

               
               102-1072, gnl|Hg17|chr12 (55042237-55041264)
               

               
               102-1072, gnl|Mm7|chr10 (127770495-127771434)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.305623)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               lun (0.150489)

	102-1072, gnl\|bosTau2\|chr5 (33287367-33288337)
	102-1072, gnl\|Hg17\|chr12 (55042237-55041264)
	102-1072, gnl\|Mm7\|chr10 (127770495-127771434)