Ss1.1-Liv1-LVR010005F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTGGGTTTTGGAGAACTTTTTATTGTTTAAAAATCAACATCGAAGCTTCACA AAAAAATACAACCCATCACAAGCGTCCTGCTCCGGAACTGCTTATTCCAAGAAGCCGAAC TGATGGCGAGGGGAGCGCGGGCGGAGGGCGTCTCACTGGGCGTTCAGCTTCTTGGAGGCC TCGTCGATGGCGGCCAGGATGCTGACCTTGAGGTTCTCCAGCACGGGCAGCAGGCCCTGG CGGAGGTCCTCCAGCGCCGGCTTGGCCTTCTCGCCCAGCGCTTTCAGCTGCTCCTGGGCC TTGGCCTGGTACTCGGCCAGGCTGCCGCCGCCCTCCTTGAGCGCCTCGAAGCGGGCGGCC ATGCGCTGGCGCAGGTCGTCGCTGTAGGGCGCCAGCTGCTGGCGCAGCGCCTCCACGTGG GCGCGCAGGCGGTCGCGGAGCTCCTCGGCCAGCGGGCTCAGCTTCTCCTGCAGCTCCTGC ACCTTCTGGCGCGCGCCCTCGCGGAACTCGGCGCCCAGCGGCGCCATCTTCTGGCGGTAC GTCTCCATCTCCTCCTGCCACTTGTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTCTTC TTCACCTCCTCCAGGTCCTTGCTCATCTCCTGCCGCAGCGCCTCGGTCTCCTTTTCCAGG TTGTCCCAGAACTCCTGGGTCACTGGGCCCAGCTGCTCACGCACTTTGGTGAACGTGCTG CCCAGGCTGTCCCAGTTGTCCAGGAGTTTCAGGTTGAGGTGTTTTCCCAAAGCGGAGGCT TCAAACTGGGCCACATAATCTCTGCCACTGTCTTTGATCGCATCCACATACACGGTGGCA AAATCCTTCACCCGATCCCAGGGTGACTGCGGGTCATCTTGCTGCCAGAAATGCCGAGCC TGGCTCCCTGTGAGGAAGAGCACAGCCAAGGTCAGCACCACGGCTTTCATCCTGAAGGGA CGTGGGTGACCTCGATGCGCCAGCGGTCTCTGACCGCCCGGTCTCCTCCAGCCTATTTAT GCTGCCAAGCAGGGGCTGGGCTGGGAGGCTGATAAGCCCAGCCCAGGCCTTGCCGCCGCT CACTGGTCCTGGAGATGTGGAACTTAGAGTTCAAGGCCTGAGCAAGTAGCAGCACTCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTGGGTTTTGGAGAACTTTTTATTGTTTAAAAATCAACATCGAAGCTTCACA AAAAAATACAACCCATCACAAGCGTCCTGCTCCGGAACTGCTTATTCCAAGAAGCCGAAC TGATGGCGAGGGGAGCGCGGGCGGAGGGCGTCTCACTGGGCGTTCAGCTTCTTGGAGGCC TCGTCGATGGCGGCCAGGATGCTGACCTTGAGGTTCTCCAGCACGGGCAGCAGGCCCTGG CGGAGGTCCTCCAGCGCCGGCTTGGCCTTCTCGCCCAGCGCTTTCAGCTGCTCCTGGGCC TTGGCCTGGTACTCGGCCAGGCTGCCGCCGCCCTCCTTGAGCGCCTCGAAGCGGGCGGCC ATGCGCTGGCGCAGGTCGTCGCTGTAGGGCGCCAGCTGCTGGCGCAGCGCCTCCACGTGG GCGCGCAGGCGGTCGCGGAGCTCCTCGGCCAGCGGGCTCAGCTTCTCCTGCAGCTCCTGC ACCTTCTGGCGCGCGCCCTCGCGGAACTCGGCGCCCAGCGGCGCCATCTTCTGGCGGTAC GTCTCCATCTCCTCCTGCCACTTGTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTCTTC TTCACCTCCTCCAGGTCCTTGCTCATCTCCTGCCGCAGCGCCTCGGTCTCCTTTTCCAGG TTGTCCCAGAACTCCTGGGTCACTGGGCCCAGCTGCTCACGCACTTTGGTGAACGTGCTG CCCAGGCTGTCCCAGTTGTCCAGGAGTTTCAGGTTGAGGTGTTTTCCCAAAGCGGAGGCT TCAAACTGGGCCACATAATCTCTGCCACTGTCTTTGATCGCATCCACATACACGGTGGCA AAATCCTTCACCCGATCCCAGGGTGACTGCGGGTCATCTTGCTGCCAGAAATGCCGAGCC TGGCTCCCTGTGAGGAAGAGCACAGCCAAGGTCAGCACCACGGCTTTCATCCTGAAGGGA CGTGGGTGACCTCGATGCGCCAGCGGTCTCTGACCGCCCGGTCTCCTCCAGCCTATTTAT GCTGCCAAGCAGGGGCTGGGCTGGGAGGCTGATAAGCCCAGCCCAGGCCTTGCCGCCGCT CACTGGTCCTGGAGATGTGGAACTTAGAGTTCAAGGCCTGAGCAAGTAGCAGCACTCACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 535-1176, - strand, RNAz p=0.996429 | |
| 695-817, - strand, RNAz p=0.883726 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 535-1176, - strand, RNAz p=0.996429 | |
| 695-817, - strand, RNAz p=0.883726 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 66-817, gnl|bosTau2|chr15 (13190052-13189299) | |
| 66-817, gnl|Hg17|chr11 (116211645-116212341) | |
| 66-817, gnl|Mm7|chr9 (46188589-46187924) | |
| 1029-1176, gnl|bosTau2|chr15 (13188100-13187956) | |
| 1029-1176, gnl|canFam2|chr5 (19744970-19745774) | |
| 1029-1176, gnl|canFam2|chr5 (19745774-19744970) | |
| 1029-1176, gnl|echTel1|scaffold_311472 (1943-1277) | |
| 1029-1176, gnl|echTel1|scaffold_311472 (1277-1943) | |
| 1029-1176, gnl|hg17|chr11 (116213126-116213918) | |
| 1029-1176, gnl|Hg17|chr11 (116213529-116213675) | |
| 1029-1176, gnl|hg17|chr22_random (13130-13922) | |
| 1029-1176, gnl|loxAfr1|scaffold_78770 (2793-1974) | |
| 1029-1176, gnl|loxAfr1|scaffold_78770 (1974-2793) | |
| 1029-1176, gnl|mm7|chr9 (46186444-46187206) | |
| 1029-1176, gnl|mm7|chr9 (46187206-46186443) | |
| 1029-1176, gnl|Mm7|chr9 (46186861-46186708) | |
| 1029-1176, gnl|monDom2|scaffold_2 (122496859-122497603) | |
| 1029-1176, gnl|monDom2|scaffold_2 (122497603-122496859) | |
| 1029-1176, gnl|oryCun1|scaffold_132176 (7291-7959) | |
| 1029-1176, gnl|oryCun1|scaffold_132176 (7959-7290) | |
| 1029-1176, gnl|panTro1|chr9 (118214268-118213476) | |
| 1029-1176, gnl|panTro1|chr9 (118213476-118214268) | |
| 1029-1176, gnl|rheMac2|chr14 (115235543-115234640) | |
| 1029-1176, gnl|rheMac2|chr14 (115234640-115235543) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 66-817, gnl|bosTau2|chr15 (13190052-13189299) | |
| 66-817, gnl|Hg17|chr11 (116211645-116212341) | |
| 66-817, gnl|Mm7|chr9 (46188589-46187924) | |
| 1029-1176, gnl|bosTau2|chr15 (13188100-13187956) | |
| 1029-1176, gnl|canFam2|chr5 (19744970-19745774) | |
| 1029-1176, gnl|canFam2|chr5 (19745774-19744970) | |
| 1029-1176, gnl|echTel1|scaffold_311472 (1943-1277) | |
| 1029-1176, gnl|echTel1|scaffold_311472 (1277-1943) | |
| 1029-1176, gnl|hg17|chr11 (116213126-116213918) | |
| 1029-1176, gnl|Hg17|chr11 (116213529-116213675) | |
| 1029-1176, gnl|hg17|chr22_random (13130-13922) | |
| 1029-1176, gnl|loxAfr1|scaffold_78770 (2793-1974) | |
| 1029-1176, gnl|loxAfr1|scaffold_78770 (1974-2793) | |
| 1029-1176, gnl|mm7|chr9 (46186444-46187206) | |
| 1029-1176, gnl|mm7|chr9 (46187206-46186443) | |
| 1029-1176, gnl|Mm7|chr9 (46186861-46186708) | |
| 1029-1176, gnl|monDom2|scaffold_2 (122496859-122497603) | |
| 1029-1176, gnl|monDom2|scaffold_2 (122497603-122496859) | |
| 1029-1176, gnl|oryCun1|scaffold_132176 (7291-7959) | |
| 1029-1176, gnl|oryCun1|scaffold_132176 (7959-7290) | |
| 1029-1176, gnl|panTro1|chr9 (118214268-118213476) | |
| 1029-1176, gnl|panTro1|chr9 (118213476-118214268) | |
| 1029-1176, gnl|rheMac2|chr14 (115235543-115234640) | |
| 1029-1176, gnl|rheMac2|chr14 (115234640-115235543) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| jej (42.6353) | |
| nje (38.1616) | |
| fli (19.8823) | |
| cli (6.72372) | |
| duo (6.04804) | |
| eli (5.76894) | |
| eje (3.36035) | |
| cov (2.90736) | |
| nco (1.4556) | |
| ill (0.877963) | |
| elu (0.770713) | |
| cbr (0.767853) | |
| fbs (0.701385) | |
| cje (0.660939) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| nep (0.36785) | |
| eep (0.367692) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| mas (0.210305) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| med (0.116252) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (42.6353) | |
| nje (38.1616) | |
| fli (19.8823) | |
| cli (6.72372) | |
| duo (6.04804) | |
| eli (5.76894) | |
| eje (3.36035) | |
| cov (2.90736) | |
| nco (1.4556) | |
| ill (0.877963) | |
| elu (0.770713) | |
| cbr (0.767853) | |
| fbs (0.701385) | |
| cje (0.660939) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| nep (0.36785) | |
| eep (0.367692) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| mas (0.210305) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| med (0.116252) |