Non-Coding RNA Search

Ss1.1-Liv1-LVR010008E05.5

Sequence:


               
               ACATTTCCATGCATATTTGATGATCTGTGCCTTTGTAGGTCTTCCAGCGAGTTAAAACAG
CTTTTAATAGCAGAGCATGCAAAGCGAGTATGTGTTTCTCCAACCCAGTCAGCACCTCCT
TGCGAGTACCTGTGCCAGGAGAAGGCTCATTTTTAAGTTACCTTCACAAACAGAAGATTC
GGGGAACGCACACAAACTCAAATACAGGGAGAATCTAAATAGTGATCAGTTGCACTTAGC
TCGGTGAAGCTGGATGAGGGCTCTCAACTTGTTTGGAGCCATTCAACTTTTAGTTCTATT
TCAGAGTCTCTTGTAAAACTTAATTGGACTACAAAAGCTTTGGGCACTGTCTGTGTGACG
CCAAATAGGTAGATTATGTTAAGTAATCTATTTCAAAGATGTTTTATTAAGCAATTATTG
ACACAGATGCCCCCCCCCTTCCCCATTCTCTTTCGCCATCCCCCACTAAGAAACTAAATT
AGACTCTTTAGGGAATGTTGACAAAGTCTTCACAATAATAGCAGAGGAATTGACGTTTCT
GGAGGTAAAATCCCAAAGGTGGCTGGTAACAGAGGGATTGCTGCAGTCAGTTGCTTTAGA
AAAGGGGGACAGGGTATCCAATTAAGAGAAGCATCCTTACCTGTGCGAGCTGTAATTTTA
ACTCAGCATCACACTTGTCTCACCCGCATCCCCTTGCCTTCAGAGGGGATGCTTGTAAAT
AAGGGTATTTATTAACTTTTCCCACCCAAAATGCATTGCTTAACTGTAATGCTCTGAACA
CACTAGGTGTCAGATATAAGCCGACTGTATCTACAGAAACTGAGAGGGCTTATGTGTGGG
AAAGAAACCGAGAGGGAGGGAAAGCTTTAACAGATGGACCTCTTAAAGATACTTCTGCAA
GATAAAAGCAATAAGACAGAAAATGAAAAAAAAGGGGGGGAGAGAATTAAAAAAAACTCA
GAGAGGCATTGTTTAAACATTCACATTTTTCTTTTTGCTGTGAACACTGAAATCCGTGAT
GATTTCATCTTGTGCTGTTCCTTGGAGAGAAAAAGAAGCCGTCAGGGGGCCAGTCCATGA
GCAGACTGGTCTGGAATGGGGATGGGGGTAGGGGCCAGGCTGAACAAACTACCACATGAC
ACAGAAAGTCATTTGCCCATATATTTTAGCGATTCTTTCCCCTTAGGACCAATTATTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTTCCATGCATATTTGATGATCTGTGCCTTTGTAGGTCTTCCAGCGAGTTAAAACAG
CTTTTAATAGCAGAGCATGCAAAGCGAGTATGTGTTTCTCCAACCCAGTCAGCACCTCCT
TGCGAGTACCTGTGCCAGGAGAAGGCTCATTTTTAAGTTACCTTCACAAACAGAAGATTC
GGGGAACGCACACAAACTCAAATACAGGGAGAATCTAAATAGTGATCAGTTGCACTTAGC
TCGGTGAAGCTGGATGAGGGCTCTCAACTTGTTTGGAGCCATTCAACTTTTAGTTCTATT
TCAGAGTCTCTTGTAAAACTTAATTGGACTACAAAAGCTTTGGGCACTGTCTGTGTGACG
CCAAATAGGTAGATTATGTTAAGTAATCTATTTCAAAGATGTTTTATTAAGCAATTATTG
ACACAGATGCCCCCCCCCTTCCCCATTCTCTTTCGCCATCCCCCACTAAGAAACTAAATT
AGACTCTTTAGGGAATGTTGACAAAGTCTTCACAATAATAGCAGAGGAATTGACGTTTCT
GGAGGTAAAATCCCAAAGGTGGCTGGTAACAGAGGGATTGCTGCAGTCAGTTGCTTTAGA
AAAGGGGGACAGGGTATCCAATTAAGAGAAGCATCCTTACCTGTGCGAGCTGTAATTTTA
ACTCAGCATCACACTTGTCTCACCCGCATCCCCTTGCCTTCAGAGGGGATGCTTGTAAAT
AAGGGTATTTATTAACTTTTCCCACCCAAAATGCATTGCTTAACTGTAATGCTCTGAACA
CACTAGGTGTCAGATATAAGCCGACTGTATCTACAGAAACTGAGAGGGCTTATGTGTGGG
AAAGAAACCGAGAGGGAGGGAAAGCTTTAACAGATGGACCTCTTAAAGATACTTCTGCAA
GATAAAAGCAATAAGACAGAAAATGAAAAAAAAGGGGGGGAGAGAATTAAAAAAAACTCA
GAGAGGCATTGTTTAAACATTCACATTTTTCTTTTTGCTGTGAACACTGAAATCCGTGAT
GATTTCATCTTGTGCTGTTCCTTGGAGAGAAAAAGAAGCCGTCAGGGGGCCAGTCCATGA
GCAGACTGGTCTGGAATGGGGATGGGGGTAGGGGCCAGGCTGAACAAACTACCACATGAC
ACAGAAAGTCATTTGCCCATATATTTTAGCGATTCTTTCCCCTTAGGACCAATTATTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               735-849, + strand, RNAz p=0.86003

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               735-849, + strand, RNAz p=0.86003

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1200, gnl|bosTau2|chr4 (46409103-46410285)
               

               
               6-1200, gnl|Hg17|chr7 (41515757-41514568)
               

               
               6-1200, gnl|Mm7|chr13 (15381996-15383197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1200, gnl|bosTau2|chr4 (46409103-46410285)
               

               
               6-1200, gnl|Hg17|chr7 (41515757-41514568)
               

               
               6-1200, gnl|Mm7|chr13 (15381996-15383197)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	6-1200, gnl\|bosTau2\|chr4 (46409103-46410285)
	6-1200, gnl\|Hg17\|chr7 (41515757-41514568)
	6-1200, gnl\|Mm7\|chr13 (15381996-15383197)