Non-Coding RNA Search

Ss1.1-Liv1-LVR010009B10.5

Sequence:


               
               GGAGCCGGGCAGAGCCGGGCGAGCGCTTGCAGGAGCTCGCGCCTGGCGGTGTCTGCGCGG
AGTGGCGGGCCGAGGGGAGCGGAGGCCTGAGCCTACCCCGACCGCGGCGCCAAGCGGAGC
TGATCGGAGGAGCGGGGGCTGCGGAGTTAGATCCTGCGCGGCACGCCCCTCGGCCGCGCT
CCATGTTCCGGCCGCGGCCCGATCCCGCGCCCCGGGCAGCCCCCATGCCCTGCGTGCGCC
GGGAGCCGTAGGCTGCAGCTGAGCCGCGGCTCCGGGAGCCGGCGGGGGCGCCGCGGCCGT
GGGGGGCGTCAATGGATCGCCACTCCAGCTACATCTTCGTCTGGCTGCAGCTGGAACTCT
GCGCCATGGCCGTGCTGCTCACCAAAGGTGAAATCAGATGCTACTGTGATGCCGCCCACT
GTGTGGCTACTGGTTATATGTGCAAATCTGAGCTGAGCGCCTGCTTCTCCAGGCTTCTCG
ATCCTCAGAACCCAAATTCCCCTCTCACCCACGGCTGTCTGGACTCTCTTGCAAGCACAG
CAGACATCTGCCAAGCCAAACAGGCACGAAACCACTCCGGCACCGCCGTCCCCACGCTGG
AATGCTGTCACGAAGACATGTGCAATTACCGAGGGCTGCAGGATGTCCTCGCCCCTCCCA
AGGGGGAGGCCTCAGGACAAGGCAACAGGTATCAGCCTGACGGTAGCAGAAACCTCATCA
CCAAAGTGCAGGAGCTGACTTCCTCCAAAGAGTTGTGGTTCCGGGCGGCAGTGATCGCTG
TTCCCATCGCCGGAGGGCTGATCCTGGTGTTGCTGATCATGCTGGCCCTGAGGATGCTGC
GGAGCGAGAACAAGAGGCTGCAGGACCAGCGGCAGCAGATGCTGTCCCGTTTGCACTACA
GCTTCCACGGACGCCACTCCAAAAAGGGGCAGGTTGCCAAGTTGGACTTGGAGTGCATGG
TGCCTGTGAGTGGCCACGAGAACTGCTGTCTGACGTGCGATAAGATGAGGCAAGCTGACC
TCAGCCACGACCGGCTCCTCTCGCTGGTGCACTGGGGCGTGTACAGCGGCCGCGGGAGGC
TGGAGTTCGTATGATGGAGACTCCCCGGAACCCCACTTCCGGGACCCTCGAAGGCCCTTG
AGTTCTGCTGGACAGGAGCACTTTATCCGAAGAGAGACGCGCAATCACCTTCGAGAGACA
AAACGACCTCCGCACACCGAACCTGGGATATTTCTTCTGAAGGATTATTTGCACAGACGT
GAATATGGTCCAGATGTATTAATTTGCTTTCGGACAATAAAAAGCAAAGAGAAGACTCTG
CACTGTTTCCAGGGTTATTTGCATCCAGGGGAGCTGGAATCGAGTACCTGAATAAATGAA
AACGTGCTTTATGGAAGTTCCTCCATCTTGATTTATTGTAAAGATTTAAAAAAATATATT
ATATATATATTTTGTCTGAAATTTAGCAGTGTCTTGTCATAAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCGGGCAGAGCCGGGCGAGCGCTTGCAGGAGCTCGCGCCTGGCGGTGTCTGCGCGG
AGTGGCGGGCCGAGGGGAGCGGAGGCCTGAGCCTACCCCGACCGCGGCGCCAAGCGGAGC
TGATCGGAGGAGCGGGGGCTGCGGAGTTAGATCCTGCGCGGCACGCCCCTCGGCCGCGCT
CCATGTTCCGGCCGCGGCCCGATCCCGCGCCCCGGGCAGCCCCCATGCCCTGCGTGCGCC
GGGAGCCGTAGGCTGCAGCTGAGCCGCGGCTCCGGGAGCCGGCGGGGGCGCCGCGGCCGT
GGGGGGCGTCAATGGATCGCCACTCCAGCTACATCTTCGTCTGGCTGCAGCTGGAACTCT
GCGCCATGGCCGTGCTGCTCACCAAAGGTGAAATCAGATGCTACTGTGATGCCGCCCACT
GTGTGGCTACTGGTTATATGTGCAAATCTGAGCTGAGCGCCTGCTTCTCCAGGCTTCTCG
ATCCTCAGAACCCAAATTCCCCTCTCACCCACGGCTGTCTGGACTCTCTTGCAAGCACAG
CAGACATCTGCCAAGCCAAACAGGCACGAAACCACTCCGGCACCGCCGTCCCCACGCTGG
AATGCTGTCACGAAGACATGTGCAATTACCGAGGGCTGCAGGATGTCCTCGCCCCTCCCA
AGGGGGAGGCCTCAGGACAAGGCAACAGGTATCAGCCTGACGGTAGCAGAAACCTCATCA
CCAAAGTGCAGGAGCTGACTTCCTCCAAAGAGTTGTGGTTCCGGGCGGCAGTGATCGCTG
TTCCCATCGCCGGAGGGCTGATCCTGGTGTTGCTGATCATGCTGGCCCTGAGGATGCTGC
GGAGCGAGAACAAGAGGCTGCAGGACCAGCGGCAGCAGATGCTGTCCCGTTTGCACTACA
GCTTCCACGGACGCCACTCCAAAAAGGGGCAGGTTGCCAAGTTGGACTTGGAGTGCATGG
TGCCTGTGAGTGGCCACGAGAACTGCTGTCTGACGTGCGATAAGATGAGGCAAGCTGACC
TCAGCCACGACCGGCTCCTCTCGCTGGTGCACTGGGGCGTGTACAGCGGCCGCGGGAGGC
TGGAGTTCGTATGATGGAGACTCCCCGGAACCCCACTTCCGGGACCCTCGAAGGCCCTTG
AGTTCTGCTGGACAGGAGCACTTTATCCGAAGAGAGACGCGCAATCACCTTCGAGAGACA
AAACGACCTCCGCACACCGAACCTGGGATATTTCTTCTGAAGGATTATTTGCACAGACGT
GAATATGGTCCAGATGTATTAATTTGCTTTCGGACAATAAAAAGCAAAGAGAAGACTCTG
CACTGTTTCCAGGGTTATTTGCATCCAGGGGAGCTGGAATCGAGTACCTGAATAAATGAA
AACGTGCTTTATGGAAGTTCCTCCATCTTGATTTATTGTAAAGATTTAAAAAAATATATT
ATATATATATTTTGTCTGAAATTTAGCAGTGTCTTGTCATAAATTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q674R8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q674R8_PIG

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-390, gnl|bosTau2|chr13 (16728624-16729030)
               

               
               1-390, gnl|Hg17|chr10 (29006440-29006911)
               


               
               670-1488, gnl|bosTau2|chr13 (21509485-21510299)
               

               
               670-1488, gnl|Hg17|chr10 (29010912-29011727)
               

               
               670-1488, gnl|Mm7|chr18 (3677904-3678711)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-390, gnl|bosTau2|chr13 (16728624-16729030)
               

               
               1-390, gnl|Hg17|chr10 (29006440-29006911)
               


               
               670-1488, gnl|bosTau2|chr13 (21509485-21510299)
               

               
               670-1488, gnl|Hg17|chr10 (29010912-29011727)
               

               
               670-1488, gnl|Mm7|chr18 (3677904-3678711)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.267344)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)

	1-390, gnl\|bosTau2\|chr13 (16728624-16729030)
	1-390, gnl\|Hg17\|chr10 (29006440-29006911)

	670-1488, gnl\|bosTau2\|chr13 (21509485-21510299)
	670-1488, gnl\|Hg17\|chr10 (29010912-29011727)
	670-1488, gnl\|Mm7\|chr18 (3677904-3678711)

	pla (0.267344)
	cje (0.165235)
	pty (0.142714)
	lyg (0.133103)
	ute (0.132784)