Non-Coding RNA Search

Ss1.1-Liv1-LVR010009B12.5

Sequence:


               
               CAGGCCCCCAGAAGTCACCTTCCTTCATCCTCCTGAGGCCTTAAGATGCGAGGTGGCACC
CAAGGCGTTGGGCAAAGGCCCGTGTGACATTTGAGGGTGAACAGAAAAACAGACGAGGAA
TAAATGATGTGGACACCGGTTCCAAAAGGCGTCACCTGCCTGGAGGTTGGGAAAGTGAGA
TTTCCAGCACCTCTTCCTTCCACGGGTTCCGAAACCCAGACATGGGTCGGAATGAGGGGT
CCCCTGGCTCGGTCCACTCGGATGGCCCAGGGGCTCTGAAGTTCCTCTCGGAGAACTAGA
GGGGTGCAGGTGTCCTGAGTCAGGCGTGACAGGCACCTCCGGGGGCCCCACCGTCAGCCA
CACCCCCTGCCACCACCGGGGGTCAGGAAAACGGGCAGTGAGAGGTTGTGACCTTGGCGG
CATTTCTGCAGGCGGCTTCAGGGTTTCAAGAAGTCTTCAGACTTCCGGGGGTCCTTTTGC
AGCTTCAGAATATTTATTGGTTTTTTAAAAAATCAATTCTACAGTGGATTTAAGGGGTTT
TTTCCTGTAGCTCAAAGGTGGAAGGCATTTATTTTATTAGCTAGCCAAATATCATTGAGA
GGAATTTAAAATACTGTTCCTACCAAAGATTTTTATTAATAAAGGCTTCTATTTTGGTAA
AAAAAAAAAAAATTTTTACTTACAGGACTGTTACTATTGGACAATTATCATTTTAAAAGC
TTTTAAGAAAATCACATCTCCTAGATGATAGGAATGATAGAAATTTGTAGCCTAATCAGG
TATCCGAGGTGTCTCAAGCACCCAGAGAAACGTACAAGAACTATTTCACCGAAGAGAAGG
GCGAAAACAGGGTTTATCTTGAACATGCTGTCAGTGAGGCGCTGGCCTTCCCGTAAGCAG
CCAGCTAGGAGGAAGTCTGTGGGTGTCGTTGCAGATTTTCATTATTTGCTAAAGTCATGC
CGTCCAATGCTTCTCCTTTCTCTTGTACAGTACGTAGTTTGAAACGGGGGTTTTGTACAT
AAATATTCTATTAAAAATTAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCCCCAGAAGTCACCTTCCTTCATCCTCCTGAGGCCTTAAGATGCGAGGTGGCACC
CAAGGCGTTGGGCAAAGGCCCGTGTGACATTTGAGGGTGAACAGAAAAACAGACGAGGAA
TAAATGATGTGGACACCGGTTCCAAAAGGCGTCACCTGCCTGGAGGTTGGGAAAGTGAGA
TTTCCAGCACCTCTTCCTTCCACGGGTTCCGAAACCCAGACATGGGTCGGAATGAGGGGT
CCCCTGGCTCGGTCCACTCGGATGGCCCAGGGGCTCTGAAGTTCCTCTCGGAGAACTAGA
GGGGTGCAGGTGTCCTGAGTCAGGCGTGACAGGCACCTCCGGGGGCCCCACCGTCAGCCA
CACCCCCTGCCACCACCGGGGGTCAGGAAAACGGGCAGTGAGAGGTTGTGACCTTGGCGG
CATTTCTGCAGGCGGCTTCAGGGTTTCAAGAAGTCTTCAGACTTCCGGGGGTCCTTTTGC
AGCTTCAGAATATTTATTGGTTTTTTAAAAAATCAATTCTACAGTGGATTTAAGGGGTTT
TTTCCTGTAGCTCAAAGGTGGAAGGCATTTATTTTATTAGCTAGCCAAATATCATTGAGA
GGAATTTAAAATACTGTTCCTACCAAAGATTTTTATTAATAAAGGCTTCTATTTTGGTAA
AAAAAAAAAAAATTTTTACTTACAGGACTGTTACTATTGGACAATTATCATTTTAAAAGC
TTTTAAGAAAATCACATCTCCTAGATGATAGGAATGATAGAAATTTGTAGCCTAATCAGG
TATCCGAGGTGTCTCAAGCACCCAGAGAAACGTACAAGAACTATTTCACCGAAGAGAAGG
GCGAAAACAGGGTTTATCTTGAACATGCTGTCAGTGAGGCGCTGGCCTTCCCGTAAGCAG
CCAGCTAGGAGGAAGTCTGTGGGTGTCGTTGCAGATTTTCATTATTTGCTAAAGTCATGC
CGTCCAATGCTTCTCCTTTCTCTTGTACAGTACGTAGTTTGAAACGGGGGTTTTGTACAT
AAATATTCTATTAAAAATTAGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               224-340, + strand, RNAz p=0.57391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-340, + strand, RNAz p=0.57391

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC027590, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC027590, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-340, gnl|bosTau2|chr29 (41313962-41314297)
               

               
               4-340, gnl|Hg17|chr11 (69712098-69712425)
               


               
               373-1044, gnl|bosTau2|chr29 (41314515-41315201)
               

               
               373-1044, gnl|Hg17|chr11 (69712522-69713176)
               

               
               373-1044, gnl|Mm7|chr7 (141014588-141013940)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-340, gnl|bosTau2|chr29 (41313962-41314297)
               

               
               4-340, gnl|Hg17|chr11 (69712098-69712425)
               


               
               373-1044, gnl|bosTau2|chr29 (41314515-41315201)
               

               
               373-1044, gnl|Hg17|chr11 (69712522-69713176)
               

               
               373-1044, gnl|Mm7|chr7 (141014588-141013940)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nje (0.16592)
               

               
               eli (0.151814)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               ldo (0.0970026)

	4-340, gnl\|bosTau2\|chr29 (41313962-41314297)
	4-340, gnl\|Hg17\|chr11 (69712098-69712425)

	373-1044, gnl\|bosTau2\|chr29 (41314515-41315201)
	373-1044, gnl\|Hg17\|chr11 (69712522-69713176)
	373-1044, gnl\|Mm7\|chr7 (141014588-141013940)