Non-Coding RNA Search

Ss1.1-Liv1-LVR010009D12.5

Sequence:


               
               GCGGCTGTATCTGGAGCAGTTGGGGTGCGCAGGCCCAGCCGGGAGCGAGCGGGCTAGGAG
AGCGGCCGCGATGCGGGAATGCATATCCGTCCACGTGGGCCAAGCCGGGGTTCAGATCGG
CAATGCCTGCTGGGAGCTCTTCTGCCTGGAGCACGGCATCCAGGCTGACGGTACCTTTGG
CGCGCAGGCCAGCAAGCTCCACGACGATGACTCCTTCACCACCTTCTTCAGCGAGACCGG
CAACGGGAAGCATGTGCCTCGGGCCGTCATGGTTGATCTGGAGCCCACCGTGGTGGATGA
GGTTCGGGCAGGAACCTACCGCCAGCTCTTCCATCCAGAGCAGCTGATCACAGGAAAAGA
GGATGCAGCCAACAACTATGCCCGGGGCCACTACACAGTGGGCAAGGAGAGCATCGACTT
GGTGCTGGACCGCATTCGCAAGCTGACAGATGCCTGCTCTGGCCTGCAGGGCTTCCTGAT
CTTCCACAGTTTTGGGGGGGGCACCGGCTCTGGCTTCACTTCTCTGCTGATGGAACGCCT
CTCCCTGGATTACGGCAAGAAGTCCAAGCTAGAGTTTGCCATCTACCCGGCACCCCAGGT
CTCCACGGCCGTGGTGGAACCCTACAACTCCATCCTGACCACCCACACCACCCTGGAACA
TTCAGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGACATCTGCCGCAGGAACCT
GGACATCGAGCGCCCCACCTACACCAACCTCAACCGCCTCATCAGCCAGATCGTGTCCTC
CATCACCGCCTCCCTGCGCTTTGATGGGGCCCTCAACGTGGACCTGACCGAGTTCCAGAC
CAACCTGGTGCCCTACCCCCGCATCCACTTCCCCCTGGTCACCTACGCACCCATCATCTC
TGCTGAGAAGGCCTACCACGAGCAGCTCTCTGTGGCTGAGATCACCAGCTCCTGCTTTGA
GCCCAACAGCCAGATGGTGAAGTGTGATCCCCGTCATGGCAAGTACATGGCCTGCTGCAT
GCTCTACCGGGGGGACGTGGTGCCCAAGGACGTCAACGTCGCCATTGCCGCCATCAAGAC
CAAGAGGACCATCCAGTTTGTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTGTATCTGGAGCAGTTGGGGTGCGCAGGCCCAGCCGGGAGCGAGCGGGCTAGGAG
AGCGGCCGCGATGCGGGAATGCATATCCGTCCACGTGGGCCAAGCCGGGGTTCAGATCGG
CAATGCCTGCTGGGAGCTCTTCTGCCTGGAGCACGGCATCCAGGCTGACGGTACCTTTGG
CGCGCAGGCCAGCAAGCTCCACGACGATGACTCCTTCACCACCTTCTTCAGCGAGACCGG
CAACGGGAAGCATGTGCCTCGGGCCGTCATGGTTGATCTGGAGCCCACCGTGGTGGATGA
GGTTCGGGCAGGAACCTACCGCCAGCTCTTCCATCCAGAGCAGCTGATCACAGGAAAAGA
GGATGCAGCCAACAACTATGCCCGGGGCCACTACACAGTGGGCAAGGAGAGCATCGACTT
GGTGCTGGACCGCATTCGCAAGCTGACAGATGCCTGCTCTGGCCTGCAGGGCTTCCTGAT
CTTCCACAGTTTTGGGGGGGGCACCGGCTCTGGCTTCACTTCTCTGCTGATGGAACGCCT
CTCCCTGGATTACGGCAAGAAGTCCAAGCTAGAGTTTGCCATCTACCCGGCACCCCAGGT
CTCCACGGCCGTGGTGGAACCCTACAACTCCATCCTGACCACCCACACCACCCTGGAACA
TTCAGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGACATCTGCCGCAGGAACCT
GGACATCGAGCGCCCCACCTACACCAACCTCAACCGCCTCATCAGCCAGATCGTGTCCTC
CATCACCGCCTCCCTGCGCTTTGATGGGGCCCTCAACGTGGACCTGACCGAGTTCCAGAC
CAACCTGGTGCCCTACCCCCGCATCCACTTCCCCCTGGTCACCTACGCACCCATCATCTC
TGCTGAGAAGGCCTACCACGAGCAGCTCTCTGTGGCTGAGATCACCAGCTCCTGCTTTGA
GCCCAACAGCCAGATGGTGAAGTGTGATCCCCGTCATGGCAAGTACATGGCCTGCTGCAT
GCTCTACCGGGGGGACGTGGTGCCCAAGGACGTCAACGTCGCCATTGCCGCCATCAAGAC
CAAGAGGACCATCCAGTTTGTAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8394493|ref|NP_059075.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8394493|ref|NP_059075.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               59-154, + strand, RNAz p=0.697444
               

               
               601-720, - strand, RNAz p=0.58999
               

               
               841-1000, - strand, RNAz p=0.812492

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-154, + strand, RNAz p=0.697444
               

               
               601-720, - strand, RNAz p=0.58999
               

               
               841-1000, - strand, RNAz p=0.812492

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               59-1104, gnl|bosTau2|chr10 (46593798-46592756)
               

               
               59-1104, gnl|Hg17|chr12 (47869041-47865382)
               

               
               59-1104, gnl|Mm7|chr15 (98938726-98935616)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-1104, gnl|bosTau2|chr10 (46593798-46592756)
               

               
               59-1104, gnl|Hg17|chr12 (47869041-47865382)
               

               
               59-1104, gnl|Mm7|chr15 (98938726-98935616)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	59-154, + strand, RNAz p=0.697444
	601-720, - strand, RNAz p=0.58999
	841-1000, - strand, RNAz p=0.812492

	59-1104, gnl\|bosTau2\|chr10 (46593798-46592756)
	59-1104, gnl\|Hg17\|chr12 (47869041-47865382)
	59-1104, gnl\|Mm7\|chr15 (98938726-98935616)