Ss1.1-Liv1-LVR010011A02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTTACTCTGTAATCTACAGGAGACAGGGGGTACTGCAGGACTTGCCAGCAGAAAAA TGAAGAGGATTCTGATTTTCCTGCTTGCTGTAGCATTTGTGCATGCTTTAGAAAGAGGTC GAGATTATGAGAAGGATAAAGTCTGCAAGGAACTTGCCAGTCTGGGAAAAGATGACTTCA CATCGTTGTCGATGGTCCTATACAGCAGGAAATTTCCCAGTGGCACCTTTGAACAGATCA GTCATCTTGTGAATGAAGTTGTGTCCTTGACAGAAGCCTGCTGTGCTGAGGGGGCCGACC CTGACTGCTATGACAACAGGACTTCAGCACTGTCAGATAAGTCCTGTGAAAGCGACTCCC CATTCCCAGTACACCCAGGAACTGCTGAGTGCTGCACCAAAGAGGGCCTTGAAAAGAAAC TCTGTATGGCTGCCCTGAAGCATCAGCCCCAAGAATTCCCTACCTACGTGGAGCCAACAA ATGACGAGATCTGTGAGGCATTCAGGAAAGACCCCAAGGGCTTTGCCAATCAATTTATGT ATGAATATTCCATTAATTATGGACAAGCTCCTCTGACACTTTTAGTCAGTTACACCAAGA GTTACCTCTCTATGGTAGGGTCCTGCTGTACTTCACCAAGCCCAACAGTATGCTTTTTAA AAGAGAGACTTCAGCTTAAACATCTATCACTTCTCACCATTATGTCCAATAGACTCTGTT CACAATATGCTGCTTATGGGAAGGATAAATCAAGGCTCAGCCATCTCATAAAATTAGCCC AAAAAGTGCCTACTGCGAATTTGGAGGATGTTTTGCCACTGGCTGAAGATGTTGCCACAA TCCTCTCCAAATGCTGTGACTCTGCCTCTGAGGACTGCATGGCCAAGGAGCTGCCCGAAT ACACAGTAAAAATCTGTGACAACTTATCCTCAAAGAACTCTAAGTTTACGGACTGTTGTC AAGAAAAAACACCCATGGACATTTTTATATGCACTTACTTCATGCCAGCTGCCCCAAGAC CTGAGCTTCCAGATGTCAAGTTGCCCACAAACAAAGATGTGTGTGATAAAGGAAACCCCA AAGTCCTGGATCAGTATATATTTGAACTGAGTAGGAAGACCCACATTCCAGAAGTATTCC TCAGTAAAATACTTGAGCCAACCCTGAAAAGCCTTGATGAATGCTGCCACTCTGAAGACT CTACCGCCTGTTTTAAAGCTAAGGGCCCTCAATTTAAGAAGGAACTATCTTCTTTCATTG AAAAGGGACAAGAACTATGTGCGGATTATTCAGAAAATACATTTACTGAGTACAAGAAAA AACTGGCAGAGCGACTAAGAGGAAAATGGCCTGACGCCACAGAGACAGAACTCGAAGAGC TGGTTAAGAAGCGCTCAGACTTTGCCTCCAAGTGCTGTTCCATAAACTCACCTCCCCTCT ACTGTGATTCAGAGATTGATGCTGAAATGAATACCCTATAGTCCTGCTGCATGTGTATCA TTTTAGATTGTTCTAGAGCTGGAACCTCCCTGGGAATGACATTGGACAGCCTAACCTGAG CAAAACCAGATACTCCCTGCTTATTATCAGTTACAGTATCCTGATATGATGATGAGTGTA ACAATTTGTCATAAAATAAATTGAAATATAATGCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTTACTCTGTAATCTACAGGAGACAGGGGGTACTGCAGGACTTGCCAGCAGAAAAA TGAAGAGGATTCTGATTTTCCTGCTTGCTGTAGCATTTGTGCATGCTTTAGAAAGAGGTC GAGATTATGAGAAGGATAAAGTCTGCAAGGAACTTGCCAGTCTGGGAAAAGATGACTTCA CATCGTTGTCGATGGTCCTATACAGCAGGAAATTTCCCAGTGGCACCTTTGAACAGATCA GTCATCTTGTGAATGAAGTTGTGTCCTTGACAGAAGCCTGCTGTGCTGAGGGGGCCGACC CTGACTGCTATGACAACAGGACTTCAGCACTGTCAGATAAGTCCTGTGAAAGCGACTCCC CATTCCCAGTACACCCAGGAACTGCTGAGTGCTGCACCAAAGAGGGCCTTGAAAAGAAAC TCTGTATGGCTGCCCTGAAGCATCAGCCCCAAGAATTCCCTACCTACGTGGAGCCAACAA ATGACGAGATCTGTGAGGCATTCAGGAAAGACCCCAAGGGCTTTGCCAATCAATTTATGT ATGAATATTCCATTAATTATGGACAAGCTCCTCTGACACTTTTAGTCAGTTACACCAAGA GTTACCTCTCTATGGTAGGGTCCTGCTGTACTTCACCAAGCCCAACAGTATGCTTTTTAA AAGAGAGACTTCAGCTTAAACATCTATCACTTCTCACCATTATGTCCAATAGACTCTGTT CACAATATGCTGCTTATGGGAAGGATAAATCAAGGCTCAGCCATCTCATAAAATTAGCCC AAAAAGTGCCTACTGCGAATTTGGAGGATGTTTTGCCACTGGCTGAAGATGTTGCCACAA TCCTCTCCAAATGCTGTGACTCTGCCTCTGAGGACTGCATGGCCAAGGAGCTGCCCGAAT ACACAGTAAAAATCTGTGACAACTTATCCTCAAAGAACTCTAAGTTTACGGACTGTTGTC AAGAAAAAACACCCATGGACATTTTTATATGCACTTACTTCATGCCAGCTGCCCCAAGAC CTGAGCTTCCAGATGTCAAGTTGCCCACAAACAAAGATGTGTGTGATAAAGGAAACCCCA AAGTCCTGGATCAGTATATATTTGAACTGAGTAGGAAGACCCACATTCCAGAAGTATTCC TCAGTAAAATACTTGAGCCAACCCTGAAAAGCCTTGATGAATGCTGCCACTCTGAAGACT CTACCGCCTGTTTTAAAGCTAAGGGCCCTCAATTTAAGAAGGAACTATCTTCTTTCATTG AAAAGGGACAAGAACTATGTGCGGATTATTCAGAAAATACATTTACTGAGTACAAGAAAA AACTGGCAGAGCGACTAAGAGGAAAATGGCCTGACGCCACAGAGACAGAACTCGAAGAGC TGGTTAAGAAGCGCTCAGACTTTGCCTCCAAGTGCTGTTCCATAAACTCACCTCCCCTCT ACTGTGATTCAGAGATTGATGCTGAAATGAATACCCTATAGTCCTGCTGCATGTGTATCA TTTTAGATTGTTCTAGAGCTGGAACCTCCCTGGGAATGACATTGGACAGCCTAACCTGAG CAAAACCAGATACTCCCTGCTTATTATCAGTTACAGTATCCTGATATGATGATGAGTGTA ACAATTTGTCATAAAATAAATTGAAATATAATGCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 2-126, gnl|bosTau2|chr3 (48015574-48015452) | |
| 2-126, gnl|canFam2|chr13 (63766782-63767072) | |
| 2-126, gnl|dasNov1|scaffold_50456 (7445-7735) | |
| 2-126, gnl|echTel1|scaffold_237941 (3324-3029) | |
| 2-126, gnl|hg17|chr4 (73014663-73014981) | |
| 2-126, gnl|Hg17|chr4 (73014824-73014705) | |
| 2-126, gnl|loxAfr1|scaffold_65206 (4195-4490) | |
| 2-126, gnl|mm7|chr5 (89430738-89431011) | |
| 2-126, gnl|Mm7|chr5 (89430891-89430771) | |
| 2-126, gnl|monDom2|scaffold_32 (17484037-17484328) | |
| 2-126, gnl|oryCun1|scaffold_198500 (1002-711) | |
| 2-126, gnl|panTro1|chr3 (60710891-60710594) | |
| 2-126, gnl|rheMac2|chr5 (57831324-57831031) | |
| 2-126, gnl|rn3|chr14 (20166343-20166059) | |
| 320-531, gnl|bosTau2|chr3 (47996384-47996173) | |
| 320-531, gnl|canFam2|chr13 (63752436-63752719) | |
| 320-531, gnl|dasNov1|scaffold_45403 (887-1169) | |
| 320-531, gnl|echTel1|scaffold_284766 (5642-5372) | |
| 320-531, gnl|galGal2|chr4 (50942264-50942528) | |
| 320-531, gnl|hg17|chr4 (72996143-72996419) | |
| 320-531, gnl|Hg17|chr4 (72996396-72996185) | |
| 320-531, gnl|loxAfr1|scaffold_7133 (73239-72967) | |
| 320-531, gnl|mm7|chr5 (89416505-89416771) | |
| 320-531, gnl|Mm7|chr5 (89416734-89416523) | |
| 320-531, gnl|monDom2|scaffold_32 (17460147-17460400) | |
| 320-531, gnl|oryCun1|scaffold_198500 (28190-27915) | |
| 320-531, gnl|rheMac2|chr5 (57850091-57849815) | |
| 320-531, gnl|rn3|chr14 (20180271-20180006) | |
| 533-665, gnl|bosTau2|chr3 (47993257-47993125) | |
| 533-665, gnl|canFam2|chr13 (63751204-63751384) | |
| 533-665, gnl|echTel1|scaffold_284766 (7135-6971) | |
| 533-665, gnl|galGal2|chr4 (50941477-50941630) | |
| 533-665, gnl|hg17|chr4 (72994539-72994711) | |
| 533-665, gnl|Hg17|chr4 (72994688-72994556) | |
| 533-665, gnl|loxAfr1|scaffold_7133 (75235-75071) | |
| 533-665, gnl|mm7|chr5 (89414663-89414835) | |
| 533-665, gnl|Mm7|chr5 (89414812-89414680) | |
| 533-665, gnl|monDom2|scaffold_32 (17458146-17458315) | |
| 533-665, gnl|oryCun1|scaffold_198500 (29941-29752) | |
| 533-665, gnl|panTro1|chr3 (60731120-60730949) | |
| 533-665, gnl|rheMac2|chr5 (57851686-57851514) | |
| 533-665, gnl|rn3|chr14 (20182601-20182437) | |
| 757-880, gnl|bosTau2|chr3 (47991035-47990912) | |
| 757-880, gnl|canFam2|chr13 (63747156-63747319) | |
| 757-880, gnl|echTel1|scaffold_284766 (9983-9804) | |
| 757-880, gnl|galGal2|chr4 (50940477-50940636) | |
| 757-880, gnl|hg17|chr4 (72988761-72988939) | |
| 757-880, gnl|Hg17|chr4 (72988927-72988804) | |
| 757-880, gnl|loxAfr1|scaffold_7133 (78714-78536) | |
| 757-880, gnl|mm7|chr5 (89412623-89412794) | |
| 757-880, gnl|Mm7|chr5 (89412783-89412660) | |
| 757-880, gnl|monDom2|scaffold_32 (17449455-17449639) | |
| 757-880, gnl|oryCun1|scaffold_198500 (31880-31710) | |
| 757-880, gnl|panTro1|chr3 (60736903-60736725) | |
| 757-880, gnl|rheMac2|chr5 (57858430-57858252) | |
| 757-880, gnl|rn3|chr14 (20186297-20186123) | |
| 889-1096, gnl|bosTau2|chr3 (47989237-47989030) | |
| 889-1096, gnl|Hg17|chr4 (72987668-72987461) | |
| 889-1096, gnl|Mm7|chr5 (89411567-89411360) | |
| 1184-1321, gnl|bosTau2|chr3 (47986358-47986219) | |
| 1322-1454, gnl|bosTau2|chr3 (47984327-47984195) | |
| 1322-1454, gnl|canFam2|chr13 (63742902-63743035) | |
| 1322-1454, gnl|echTel1|scaffold_284766 (17189-17060) | |
| 1322-1454, gnl|galGal2|chr4 (50939210-50939340) | |
| 1322-1454, gnl|hg17|chr4 (72983243-72983376) | |
| 1322-1454, gnl|Hg17|chr4 (72983402-72983270) | |
| 1322-1454, gnl|loxAfr1|scaffold_76960 (5624-5494) | |
| 1322-1454, gnl|mm7|chr5 (89397987-89398105) | |
| 1322-1454, gnl|Mm7|chr5 (89398131-89397999) | |
| 1322-1454, gnl|oryCun1|scaffold_207432 (44893-44757) | |
| 1322-1454, gnl|panTro1|chr3 (60742521-60742388) | |
| 1322-1454, gnl|rheMac2|chr5 (57863872-57863739) | |
| 1322-1454, gnl|rn3|chr14 (20192497-20192365) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-126, gnl|bosTau2|chr3 (48015574-48015452) | |
| 2-126, gnl|canFam2|chr13 (63766782-63767072) | |
| 2-126, gnl|dasNov1|scaffold_50456 (7445-7735) | |
| 2-126, gnl|echTel1|scaffold_237941 (3324-3029) | |
| 2-126, gnl|hg17|chr4 (73014663-73014981) | |
| 2-126, gnl|Hg17|chr4 (73014824-73014705) | |
| 2-126, gnl|loxAfr1|scaffold_65206 (4195-4490) | |
| 2-126, gnl|mm7|chr5 (89430738-89431011) | |
| 2-126, gnl|Mm7|chr5 (89430891-89430771) | |
| 2-126, gnl|monDom2|scaffold_32 (17484037-17484328) | |
| 2-126, gnl|oryCun1|scaffold_198500 (1002-711) | |
| 2-126, gnl|panTro1|chr3 (60710891-60710594) | |
| 2-126, gnl|rheMac2|chr5 (57831324-57831031) | |
| 2-126, gnl|rn3|chr14 (20166343-20166059) | |
| 320-531, gnl|bosTau2|chr3 (47996384-47996173) | |
| 320-531, gnl|canFam2|chr13 (63752436-63752719) | |
| 320-531, gnl|dasNov1|scaffold_45403 (887-1169) | |
| 320-531, gnl|echTel1|scaffold_284766 (5642-5372) | |
| 320-531, gnl|galGal2|chr4 (50942264-50942528) | |
| 320-531, gnl|hg17|chr4 (72996143-72996419) | |
| 320-531, gnl|Hg17|chr4 (72996396-72996185) | |
| 320-531, gnl|loxAfr1|scaffold_7133 (73239-72967) | |
| 320-531, gnl|mm7|chr5 (89416505-89416771) | |
| 320-531, gnl|Mm7|chr5 (89416734-89416523) | |
| 320-531, gnl|monDom2|scaffold_32 (17460147-17460400) | |
| 320-531, gnl|oryCun1|scaffold_198500 (28190-27915) | |
| 320-531, gnl|rheMac2|chr5 (57850091-57849815) | |
| 320-531, gnl|rn3|chr14 (20180271-20180006) | |
| 533-665, gnl|bosTau2|chr3 (47993257-47993125) | |
| 533-665, gnl|canFam2|chr13 (63751204-63751384) | |
| 533-665, gnl|echTel1|scaffold_284766 (7135-6971) | |
| 533-665, gnl|galGal2|chr4 (50941477-50941630) | |
| 533-665, gnl|hg17|chr4 (72994539-72994711) | |
| 533-665, gnl|Hg17|chr4 (72994688-72994556) | |
| 533-665, gnl|loxAfr1|scaffold_7133 (75235-75071) | |
| 533-665, gnl|mm7|chr5 (89414663-89414835) | |
| 533-665, gnl|Mm7|chr5 (89414812-89414680) | |
| 533-665, gnl|monDom2|scaffold_32 (17458146-17458315) | |
| 533-665, gnl|oryCun1|scaffold_198500 (29941-29752) | |
| 533-665, gnl|panTro1|chr3 (60731120-60730949) | |
| 533-665, gnl|rheMac2|chr5 (57851686-57851514) | |
| 533-665, gnl|rn3|chr14 (20182601-20182437) | |
| 757-880, gnl|bosTau2|chr3 (47991035-47990912) | |
| 757-880, gnl|canFam2|chr13 (63747156-63747319) | |
| 757-880, gnl|echTel1|scaffold_284766 (9983-9804) | |
| 757-880, gnl|galGal2|chr4 (50940477-50940636) | |
| 757-880, gnl|hg17|chr4 (72988761-72988939) | |
| 757-880, gnl|Hg17|chr4 (72988927-72988804) | |
| 757-880, gnl|loxAfr1|scaffold_7133 (78714-78536) | |
| 757-880, gnl|mm7|chr5 (89412623-89412794) | |
| 757-880, gnl|Mm7|chr5 (89412783-89412660) | |
| 757-880, gnl|monDom2|scaffold_32 (17449455-17449639) | |
| 757-880, gnl|oryCun1|scaffold_198500 (31880-31710) | |
| 757-880, gnl|panTro1|chr3 (60736903-60736725) | |
| 757-880, gnl|rheMac2|chr5 (57858430-57858252) | |
| 757-880, gnl|rn3|chr14 (20186297-20186123) | |
| 889-1096, gnl|bosTau2|chr3 (47989237-47989030) | |
| 889-1096, gnl|Hg17|chr4 (72987668-72987461) | |
| 889-1096, gnl|Mm7|chr5 (89411567-89411360) | |
| 1184-1321, gnl|bosTau2|chr3 (47986358-47986219) | |
| 1322-1454, gnl|bosTau2|chr3 (47984327-47984195) | |
| 1322-1454, gnl|canFam2|chr13 (63742902-63743035) | |
| 1322-1454, gnl|echTel1|scaffold_284766 (17189-17060) | |
| 1322-1454, gnl|galGal2|chr4 (50939210-50939340) | |
| 1322-1454, gnl|hg17|chr4 (72983243-72983376) | |
| 1322-1454, gnl|Hg17|chr4 (72983402-72983270) | |
| 1322-1454, gnl|loxAfr1|scaffold_76960 (5624-5494) | |
| 1322-1454, gnl|mm7|chr5 (89397987-89398105) | |
| 1322-1454, gnl|Mm7|chr5 (89398131-89397999) | |
| 1322-1454, gnl|oryCun1|scaffold_207432 (44893-44757) | |
| 1322-1454, gnl|panTro1|chr3 (60742521-60742388) | |
| 1322-1454, gnl|rheMac2|chr5 (57863872-57863739) | |
| 1322-1454, gnl|rn3|chr14 (20192497-20192365) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| lun (7.67494) | |
| cli (3.05623) | |
| eli (2.42903) | |
| fli (1.42017) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (7.67494) | |
| cli (3.05623) | |
| eli (2.42903) | |
| fli (1.42017) | |
| eje (0.0988338) |