Non-Coding RNA Search

Ss1.1-Liv1-LVR010011A07.5

Sequence:


               
               CGGTTGCGCCGCGGAGCGCAGCTGTGAGGGAGTCTTTCGGATCCGGGGCCCCGGAACCCG
AGCTGAAGCTGAAGCGCAGACCGAGGGTGCGGAGTCGGGAGGCCTGAGTGTTTGTTCCAG
CATGTCGGAGGGTGAGTCCCAGACAGTACTCAGCAGTGGCTCAGACCCAAAGGTAGAATC
CTCATCCTCAGCTCCTGGCCTGACATCAGTGTCACCTCCTGTGACCTCCACGACCTCAGC
TGCTTCCCCAGAGGAAGAGGAAGAAAGTGAAGATGAGTCTGAAATCTTGGAAGAGTCACC
CTGTGGGCGCTGGCAGAAGAGGCGAGAAGAGGTGAATCAGCGGAATGTACCAGGTATTGA
CAGTGCATACCTGGCCATGGATACAGAGGAAGGTGTAGAGGTTGTGTGGAATGAGGTACA
GTTCTCTGAGCGCAAGAACTACAAGCTGCAGGAGGAAAAGGTCCGTGCTGTGTTTGATAA
TCTGATTCAGTTGGAACATCTCAACATTGTCAAGTTTCACAAGTATTGGGCTGACGTTAA
AGAGAATAAGGCCAGGGTCATTTTTATCACAGAATACATGTCATCTGGGAGTCTTAAGCA
GTTTCTGAAGAAGACCAAAAAGAACCACAAGACTATGAATGAAAAGGCTTGGAAACGTTG
GTGCACACAGATCCTCTCTGCCCTAAGCTACCTGCACTCCTGTGACCCCCCCATCATCCA
TGGGAACCTGACCTGTGACACCATCTTCATCCAGCACAACGGACTCATCAAGATTGGCTC
TGTGGCTCCTGATACTATCAACAATCATGTGAAGACTTGTCGGGAAGAGCAGAAGAATCT
CCACTTCTTTGCACCAGAATATGGAGAAGTCACTAATGTGACAACAGCAGTGGACATCTA
CTCCTTTGGCATGTGTGCACTGGAGATGGCAGTGCTGGAGATTCAGGGCAATGGAGAGTC
CTCTTATGTGCCACAGGAAGCCATCAGCAGTGCCATCCAGCTTCTAGAAGACCCTTTACA
GAGGGAGTTCATTCAGAAGTGCCTGCAGTCTGAGCCTGCTCGCAGACCAACAGCCAGAGA
ACTTCTGTTCCACCCGGCACTGTTTGAAGTGCCCTCGCTCAAGCTCCTCGCTGCCCACTG
CATCGTGGGTCACCAGCACATGATCCCGGAGAATGCTTTGGAGGAGATCACCAAAAACAT
GGATACCAGTGCTGTACTGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAGAC
TTTGTACTCTCAGTCACCAGCTCTGGAACTGGATAAATTCCTTGAAGATGTCAGGAACGG
GATCTACCCGCTGACAGCCTTTGGCCTGCCTCGGCCCCAGCAGCCACAGCAGGAGGAGGT
GACATCACCGGTGGTGCCCCCCTCTGTCAAGACTCCAACTCCTGAGCCGGCTGAGGTGGA
GACCCGCAAGGTGGTGCTGATGCAGTGCAACATCGAGTCGGTGGAGGAGGGTGTCAAACA
CCACCTGACGCTTCTGCTGAAGCTAGAGGACAAACTGAACCGGCACCTGAGCTGTGACCT
GATGCCAAACGAGAACATCCCCGAGCTGGCGGCTGAGCTGGTGCAGCTGGGCTTCATCAG
TGAGGCCGACCAGAGCCGACTGACCTCCCTGCTGGAGGAGACCCTGAACAAGTTCAACTT
CGCCAGGAACAGCACCCTCAACTCAGCCGCTGTCACCGTCTCCTCTTAGAGCTCCTCGGG
CCAGGCCCCAACCTGCGCTGTGGCTGTCACCAGGCGCGCCGCAGCCCCCGCCCCTCCCCC
CAGTCAGTATTACCCTGTGAGGCCCCTCTCTCCTTTGTTATTCAGGAGGGCTTTGGGGCC
CCCTGGTTCTGAGCATCACCCTCCCTGCCCCTCCCCGTCTCTTCCCTCCCTCTGCACTTT
GTTTACTTGTTTTGCACAGACGTGGGCCCGGGCCTTCTCAGCAGCCGCCTTCTAGTTGGG
GGCACGTAGCTGACCTGCCGGCTCCCGCCCAGCCTGTGTGGAAAGGAAGCCCACGGGCGC
CGGGGGAGCTGCATTCTACAATCCCGCTGGGGCGGACGGGGCGGGAGAGAAGGGTGGTGC
TGCAGTGGTGGCCCTGGGGGGCCATTCGATTCGCCTCAGTTGCTGCTGTAATAAAAGTCT
ACTTTTTGCTACAAAAAAAAAAAAGTGTGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTTGCGCCGCGGAGCGCAGCTGTGAGGGAGTCTTTCGGATCCGGGGCCCCGGAACCCG
AGCTGAAGCTGAAGCGCAGACCGAGGGTGCGGAGTCGGGAGGCCTGAGTGTTTGTTCCAG
CATGTCGGAGGGTGAGTCCCAGACAGTACTCAGCAGTGGCTCAGACCCAAAGGTAGAATC
CTCATCCTCAGCTCCTGGCCTGACATCAGTGTCACCTCCTGTGACCTCCACGACCTCAGC
TGCTTCCCCAGAGGAAGAGGAAGAAAGTGAAGATGAGTCTGAAATCTTGGAAGAGTCACC
CTGTGGGCGCTGGCAGAAGAGGCGAGAAGAGGTGAATCAGCGGAATGTACCAGGTATTGA
CAGTGCATACCTGGCCATGGATACAGAGGAAGGTGTAGAGGTTGTGTGGAATGAGGTACA
GTTCTCTGAGCGCAAGAACTACAAGCTGCAGGAGGAAAAGGTCCGTGCTGTGTTTGATAA
TCTGATTCAGTTGGAACATCTCAACATTGTCAAGTTTCACAAGTATTGGGCTGACGTTAA
AGAGAATAAGGCCAGGGTCATTTTTATCACAGAATACATGTCATCTGGGAGTCTTAAGCA
GTTTCTGAAGAAGACCAAAAAGAACCACAAGACTATGAATGAAAAGGCTTGGAAACGTTG
GTGCACACAGATCCTCTCTGCCCTAAGCTACCTGCACTCCTGTGACCCCCCCATCATCCA
TGGGAACCTGACCTGTGACACCATCTTCATCCAGCACAACGGACTCATCAAGATTGGCTC
TGTGGCTCCTGATACTATCAACAATCATGTGAAGACTTGTCGGGAAGAGCAGAAGAATCT
CCACTTCTTTGCACCAGAATATGGAGAAGTCACTAATGTGACAACAGCAGTGGACATCTA
CTCCTTTGGCATGTGTGCACTGGAGATGGCAGTGCTGGAGATTCAGGGCAATGGAGAGTC
CTCTTATGTGCCACAGGAAGCCATCAGCAGTGCCATCCAGCTTCTAGAAGACCCTTTACA
GAGGGAGTTCATTCAGAAGTGCCTGCAGTCTGAGCCTGCTCGCAGACCAACAGCCAGAGA
ACTTCTGTTCCACCCGGCACTGTTTGAAGTGCCCTCGCTCAAGCTCCTCGCTGCCCACTG
CATCGTGGGTCACCAGCACATGATCCCGGAGAATGCTTTGGAGGAGATCACCAAAAACAT
GGATACCAGTGCTGTACTGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAGAC
TTTGTACTCTCAGTCACCAGCTCTGGAACTGGATAAATTCCTTGAAGATGTCAGGAACGG
GATCTACCCGCTGACAGCCTTTGGCCTGCCTCGGCCCCAGCAGCCACAGCAGGAGGAGGT
GACATCACCGGTGGTGCCCCCCTCTGTCAAGACTCCAACTCCTGAGCCGGCTGAGGTGGA
GACCCGCAAGGTGGTGCTGATGCAGTGCAACATCGAGTCGGTGGAGGAGGGTGTCAAACA
CCACCTGACGCTTCTGCTGAAGCTAGAGGACAAACTGAACCGGCACCTGAGCTGTGACCT
GATGCCAAACGAGAACATCCCCGAGCTGGCGGCTGAGCTGGTGCAGCTGGGCTTCATCAG
TGAGGCCGACCAGAGCCGACTGACCTCCCTGCTGGAGGAGACCCTGAACAAGTTCAACTT
CGCCAGGAACAGCACCCTCAACTCAGCCGCTGTCACCGTCTCCTCTTAGAGCTCCTCGGG
CCAGGCCCCAACCTGCGCTGTGGCTGTCACCAGGCGCGCCGCAGCCCCCGCCCCTCCCCC
CAGTCAGTATTACCCTGTGAGGCCCCTCTCTCCTTTGTTATTCAGGAGGGCTTTGGGGCC
CCCTGGTTCTGAGCATCACCCTCCCTGCCCCTCCCCGTCTCTTCCCTCCCTCTGCACTTT
GTTTACTTGTTTTGCACAGACGTGGGCCCGGGCCTTCTCAGCAGCCGCCTTCTAGTTGGG
GGCACGTAGCTGACCTGCCGGCTCCCGCCCAGCCTGTGTGGAAAGGAAGCCCACGGGCGC
CGGGGGAGCTGCATTCTACAATCCCGCTGGGGCGGACGGGGCGGGAGAGAAGGGTGGTGC
TGCAGTGGTGGCCCTGGGGGGCCATTCGATTCGCCTCAGTTGCTGCTGTAATAAAAGTCT
ACTTTTTGCTACAAAAAAAAAAAAGTGTGTGTGTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9UHY1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UHY1_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               686-787, gnl|bosTau2|chr14 (351979-351878)
               

               
               686-787, gnl|Hg17|chr8 (144993570-144993469)
               

               
               686-787, gnl|Mm7|chr15 (76172700-76172599)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               686-787, gnl|bosTau2|chr14 (351979-351878)
               

               
               686-787, gnl|Hg17|chr8 (144993570-144993469)
               

               
               686-787, gnl|Mm7|chr15 (76172700-76172599)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cty (0.31224)
               

               
               cov (0.264306)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               cov (0.264306)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	686-787, gnl\|bosTau2\|chr14 (351979-351878)
	686-787, gnl\|Hg17\|chr8 (144993570-144993469)
	686-787, gnl\|Mm7\|chr15 (76172700-76172599)

	cty (0.31224)
	cov (0.264306)
	cbr (0.255951)
	ese (0.253004)
	ecc (0.23007)
	mas (0.210305)
	eli (0.151814)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)