Ss1.1-Liv1-LVR010011B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGCCGCCGCGGCGGAGGCGGTCCTGCTGGCTGCTGTGTACGCGGCGAGCGACACCTGG GACACCTGGTGCGGCCAGCTCGGCTCCTGCGACGCCCGCGTCCGCGGCCTCGACACTAGC TGCGGCCCGGCCGCCGCTTGAACATGGACTCCGCCGGCCAAGATATCAACCTGAATTCTC CTAACAAAGGCCTGCTCTCCGACTCCATGACGGATGTCCCTGTCGACACAGCCCAGACGC CTGTCGAGGGTCTGACGGAGGCCGAGGCTGAGGAGCTGAGGGCCGAGCTGGCAAAGGTCG AGGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCCGCCAAGGAGCGCCACTGCGGAGAGC TGAGGCGGAAGCTGGGCCTCTCAGCCTTGGAGGGCCTGCGGCAGAACCTGTCACGGAGCT GGCAGGACGTGCAAGGCTCCAGCGCCTATATGAAAACTTCTGAGAAACTCGGAGAGTGGA ATGAGAAAGTGACCCAGTCGGACCTCTACAAGAAGACTCAGGAAACTCTCTCTCAGGCGG GACAGAAGACCTCAGCTGCCCTGTCCACCATGGGCTCAGCCATCAGCAGGAAGCTCGGAG ACATGAGGAATTCTGCCACCTTCAAGTCATTTGAAGACCGAGTTGGGACCATAAAGTCTA AGGTTGTCGGCGGCAGAGAGAATGGTGGTGACAACCTGCCCTCCCCGGCCGGGAGTGGTG ACAAACCCCTGCCTGATCGCACGTCCTTCTGAGCCCAGCGGGCTTCGCGTGGCCACAGAC AAGCACAGCCTCCTGGCCACAGCTGCAGCTGCGTGAGCGGGGCGGGCAGCCAGGCCTCGG CAGCGCTCAGAGCTGGCTTTGAGGACAGTCGTGCCATCCATGTGGGGCATGGCCGCAGGC TCGCGTGGGGCCGAGGACACGCCACCTGCACTTGCCTCCACTGTGTCAGCAGAGGCGGCG GTCTCCGAGCCAGAGCCCGGCTCCCTCTGGGAACCGTGTGTGCTCAGCGCGTGTTCAAGG GAAGAGCCACAGTGTGAAACACGCCGCGTCTGCTCCGCTCCTTCCTCAGGCGCAGAGGCC GCGCCTCCAGGAAGCCCTGCCTGATCTGCAGTTTCTTTTCAACATGCGCAACAAACTGTC CATTTTCGGAGACCCGCCAGAAGGAAACTGATTATCAGCAGCTGCCTAATTGTTACACTA ATGATCTAGCTTTAACAAAAGCAAATTCTTTATTTTTTAAATGCAGTGGGTTTTTCAAAA ATTAAAACTAAGCAAAGCAACTTTAAAAAAAAAAAAAGAAAATATCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGCCGCCGCGGCGGAGGCGGTCCTGCTGGCTGCTGTGTACGCGGCGAGCGACACCTGG GACACCTGGTGCGGCCAGCTCGGCTCCTGCGACGCCCGCGTCCGCGGCCTCGACACTAGC TGCGGCCCGGCCGCCGCTTGAACATGGACTCCGCCGGCCAAGATATCAACCTGAATTCTC CTAACAAAGGCCTGCTCTCCGACTCCATGACGGATGTCCCTGTCGACACAGCCCAGACGC CTGTCGAGGGTCTGACGGAGGCCGAGGCTGAGGAGCTGAGGGCCGAGCTGGCAAAGGTCG AGGAGGAAATTGTCACTCTGCGCCAGGTGCTGGCCGCCAAGGAGCGCCACTGCGGAGAGC TGAGGCGGAAGCTGGGCCTCTCAGCCTTGGAGGGCCTGCGGCAGAACCTGTCACGGAGCT GGCAGGACGTGCAAGGCTCCAGCGCCTATATGAAAACTTCTGAGAAACTCGGAGAGTGGA ATGAGAAAGTGACCCAGTCGGACCTCTACAAGAAGACTCAGGAAACTCTCTCTCAGGCGG GACAGAAGACCTCAGCTGCCCTGTCCACCATGGGCTCAGCCATCAGCAGGAAGCTCGGAG ACATGAGGAATTCTGCCACCTTCAAGTCATTTGAAGACCGAGTTGGGACCATAAAGTCTA AGGTTGTCGGCGGCAGAGAGAATGGTGGTGACAACCTGCCCTCCCCGGCCGGGAGTGGTG ACAAACCCCTGCCTGATCGCACGTCCTTCTGAGCCCAGCGGGCTTCGCGTGGCCACAGAC AAGCACAGCCTCCTGGCCACAGCTGCAGCTGCGTGAGCGGGGCGGGCAGCCAGGCCTCGG CAGCGCTCAGAGCTGGCTTTGAGGACAGTCGTGCCATCCATGTGGGGCATGGCCGCAGGC TCGCGTGGGGCCGAGGACACGCCACCTGCACTTGCCTCCACTGTGTCAGCAGAGGCGGCG GTCTCCGAGCCAGAGCCCGGCTCCCTCTGGGAACCGTGTGTGCTCAGCGCGTGTTCAAGG GAAGAGCCACAGTGTGAAACACGCCGCGTCTGCTCCGCTCCTTCCTCAGGCGCAGAGGCC GCGCCTCCAGGAAGCCCTGCCTGATCTGCAGTTTCTTTTCAACATGCGCAACAAACTGTC CATTTTCGGAGACCCGCCAGAAGGAAACTGATTATCAGCAGCTGCCTAATTGTTACACTA ATGATCTAGCTTTAACAAAAGCAAATTCTTTATTTTTTAAATGCAGTGGGTTTTTCAAAA ATTAAAACTAAGCAAAGCAACTTTAAAAAAAAAAAAAGAAAATATCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 4-165, gnl|bosTau2|chr13 (35243977-35243825) | |
| 4-165, gnl|canFam2|chr24 (50400332-50400583) | |
| 4-165, gnl|dasNov1|scaffold_282293 (864-599) | |
| 4-165, gnl|echTel1|scaffold_237979 (11563-11312) | |
| 4-165, gnl|hg17|chr20 (61966928-61967185) | |
| 4-165, gnl|Hg17|chr20 (61967051-61967184) | |
| 4-165, gnl|mm7|chr2 (181997972-181998248) | |
| 4-165, gnl|Mm7|chr2 (181998097-181998247) | |
| 4-165, gnl|monDom2|scaffold_1 (184642316-184642578) | |
| 4-165, gnl|panTro1|chr21_random (19935072-19934816) | |
| 4-165, gnl|rheMac2|chr10 (480557-480300) | |
| 4-165, gnl|rn3|chr3 (170537560-170537836) | |
| 295-441, gnl|bosTau2|chr13 (35239572-35239426) | |
| 295-441, gnl|canFam2|chr24 (50404914-50405027) | |
| 295-441, gnl|canFam2|chr24 (50404908-50405023) | |
| 295-441, gnl|danRer3|chr23 (20321036-20320923) | |
| 295-441, gnl|dasNov1|scaffold_3054 (35646-35522) | |
| 295-441, gnl|dasNov1|scaffold_65370 (1950-1835) | |
| 295-441, gnl|echTel1|scaffold_237979 (7562-7449) | |
| 295-441, gnl|echTel1|scaffold_237979 (7568-7453) | |
| 295-441, gnl|fr1|chrUn (219866652-219866766) | |
| 295-441, gnl|hg17|chr12 (131932253-131932374) | |
| 295-441, gnl|hg17|chr20 (61975458-61975573) | |
| 295-441, gnl|Hg17|chr20 (61975463-61975609) | |
| 295-441, gnl|loxAfr1|scaffold_8286 (52486-52373) | |
| 295-441, gnl|mm7|chr2 (182002816-182002929) | |
| 295-441, gnl|mm7|chr2 (182002810-182002925) | |
| 295-441, gnl|Mm7|chr2 (182002815-182002961) | |
| 295-441, gnl|monDom2|scaffold_1 (184650050-184650159) | |
| 295-441, gnl|monDom2|scaffold_68 (8927553-8927659) | |
| 295-441, gnl|oryCun1|scaffold_177073 (16527-16407) | |
| 295-441, gnl|oryCun1|scaffold_177073 (16524-16418) | |
| 295-441, gnl|panTro1|chr10 (134789239-134789361) | |
| 295-441, gnl|panTro1|chr21_random (19925704-19925589) | |
| 295-441, gnl|rheMac2|chr15 (70810614-70810490) | |
| 295-441, gnl|rheMac2|chr4 (138705558-138705443) | |
| 295-441, gnl|rn3|chr3 (170542931-170543044) | |
| 295-441, gnl|rn3|chr3 (170542925-170543040) | |
| 295-441, gnl|tetNig1|chr14 (6370102-6369990) | |
| 295-441, gnl|tetNig1|chrUn_random (71720334-71720131) | |
| 506-608, gnl|bosTau2|chr13 (35234870-35234768) | |
| 506-608, gnl|canFam2|chr24 (50410370-50410454) | |
| 506-608, gnl|dasNov1|scaffold_3054 (35488-35397) | |
| 506-608, gnl|echTel1|scaffold_237979 (4557-4466) | |
| 506-608, gnl|hg17|chr12 (131932438-131932546) | |
| 506-608, gnl|Hg17|chr20 (61984516-61984618) | |
| 506-608, gnl|mm7|chr2 (182009086-182009177) | |
| 506-608, gnl|Mm7|chr2 (182009078-182009180) | |
| 506-608, gnl|monDom2|scaffold_1 (184659537-184659628) | |
| 506-608, gnl|oryCun1|scaffold_177073 (16381-16305) | |
| 506-608, gnl|panTro1|chr10 (134789425-134789533) | |
| 506-608, gnl|rheMac2|chr15 (70810479-70810392) | |
| 506-608, gnl|rn3|chr3 (170548901-170548992) | |
| 506-608, gnl|tetNig1|chrUn_random (71720074-71720015) | |
| 655-813, gnl|bosTau2|chr13 (35229607-35229447) | |
| 655-813, gnl|canFam2|chr24 (50416103-50416355) | |
| 655-813, gnl|canFam2|chr24 (50416102-50416205) | |
| 655-813, gnl|dasNov1|scaffold_106239 (845-741) | |
| 655-813, gnl|dasNov1|scaffold_3054 (35323-35082) | |
| 655-813, gnl|galGal2|chrUn (56597709-56597954) | |
| 655-813, gnl|galGal2|chrUn (56597709-56597809) | |
| 655-813, gnl|hg17|chr12 (131932597-131932842) | |
| 655-813, gnl|hg17|chr20 (61991646-61991749) | |
| 655-813, gnl|Hg17|chr20 (61991645-61991809) | |
| 655-813, gnl|loxAfr1|scaffold_20637 (30340-30109) | |
| 655-813, gnl|loxAfr1|scaffold_20637 (30340-30238) | |
| 655-813, gnl|mm7|chr2 (182015991-182016235) | |
| 655-813, gnl|mm7|chr2 (182015991-182016094) | |
| 655-813, gnl|Mm7|chr2 (182015990-182016152) | |
| 655-813, gnl|monDom2|scaffold_1 (184668776-184669046) | |
| 655-813, gnl|monDom2|scaffold_1 (184668776-184668880) | |
| 655-813, gnl|oryCun1|scaffold_177073 (16254-15921) | |
| 655-813, gnl|oryCun1|scaffold_177073 (16254-16097) | |
| 655-813, gnl|panTro1|chr10 (134789584-134789829) | |
| 655-813, gnl|panTro1|chr21 (65064422-65064525) | |
| 655-813, gnl|rheMac2|chr10 (457046-456800) | |
| 655-813, gnl|rheMac2|chr10 (457046-456943) | |
| 655-813, gnl|rn3|chr3 (170555751-170555994) | |
| 655-813, gnl|rn3|chr3 (170555751-170555854) | |
| 655-813, gnl|tetNig1|chrUn_random (86690115-86690214) | |
| 960-1285, gnl|bosTau2|chr13 (35229286-35228953) | |
| 960-1285, gnl|canFam2|chr24 (50416412-50416861) | |
| 960-1285, gnl|dasNov1|scaffold_106239 (543-69) | |
| 960-1285, gnl|echTel1|scaffold_258463 (2765-3195) | |
| 960-1285, gnl|galGal2|chrUn (56598018-56598568) | |
| 960-1285, gnl|hg17|chr20 (61991952-61992442) | |
| 960-1285, gnl|Hg17|chr20 (61992020-61992373) | |
| 960-1285, gnl|loxAfr1|scaffold_20637 (30055-29570) | |
| 960-1285, gnl|mm7|chr2 (182016287-182016765) | |
| 960-1285, gnl|Mm7|chr2 (182016364-182016693) | |
| 960-1285, gnl|monDom2|scaffold_1 (184669107-184669643) | |
| 960-1285, gnl|oryCun1|scaffold_177073 (15865-15417) | |
| 960-1285, gnl|panTro1|chr21 (65064728-65065205) | |
| 960-1285, gnl|rheMac2|chr10 (456742-456254) | |
| 960-1285, gnl|rn3|chr3 (170556046-170556518) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-165, gnl|bosTau2|chr13 (35243977-35243825) | |
| 4-165, gnl|canFam2|chr24 (50400332-50400583) | |
| 4-165, gnl|dasNov1|scaffold_282293 (864-599) | |
| 4-165, gnl|echTel1|scaffold_237979 (11563-11312) | |
| 4-165, gnl|hg17|chr20 (61966928-61967185) | |
| 4-165, gnl|Hg17|chr20 (61967051-61967184) | |
| 4-165, gnl|mm7|chr2 (181997972-181998248) | |
| 4-165, gnl|Mm7|chr2 (181998097-181998247) | |
| 4-165, gnl|monDom2|scaffold_1 (184642316-184642578) | |
| 4-165, gnl|panTro1|chr21_random (19935072-19934816) | |
| 4-165, gnl|rheMac2|chr10 (480557-480300) | |
| 4-165, gnl|rn3|chr3 (170537560-170537836) | |
| 295-441, gnl|bosTau2|chr13 (35239572-35239426) | |
| 295-441, gnl|canFam2|chr24 (50404914-50405027) | |
| 295-441, gnl|canFam2|chr24 (50404908-50405023) | |
| 295-441, gnl|danRer3|chr23 (20321036-20320923) | |
| 295-441, gnl|dasNov1|scaffold_3054 (35646-35522) | |
| 295-441, gnl|dasNov1|scaffold_65370 (1950-1835) | |
| 295-441, gnl|echTel1|scaffold_237979 (7562-7449) | |
| 295-441, gnl|echTel1|scaffold_237979 (7568-7453) | |
| 295-441, gnl|fr1|chrUn (219866652-219866766) | |
| 295-441, gnl|hg17|chr12 (131932253-131932374) | |
| 295-441, gnl|hg17|chr20 (61975458-61975573) | |
| 295-441, gnl|Hg17|chr20 (61975463-61975609) | |
| 295-441, gnl|loxAfr1|scaffold_8286 (52486-52373) | |
| 295-441, gnl|mm7|chr2 (182002816-182002929) | |
| 295-441, gnl|mm7|chr2 (182002810-182002925) | |
| 295-441, gnl|Mm7|chr2 (182002815-182002961) | |
| 295-441, gnl|monDom2|scaffold_1 (184650050-184650159) | |
| 295-441, gnl|monDom2|scaffold_68 (8927553-8927659) | |
| 295-441, gnl|oryCun1|scaffold_177073 (16527-16407) | |
| 295-441, gnl|oryCun1|scaffold_177073 (16524-16418) | |
| 295-441, gnl|panTro1|chr10 (134789239-134789361) | |
| 295-441, gnl|panTro1|chr21_random (19925704-19925589) | |
| 295-441, gnl|rheMac2|chr15 (70810614-70810490) | |
| 295-441, gnl|rheMac2|chr4 (138705558-138705443) | |
| 295-441, gnl|rn3|chr3 (170542931-170543044) | |
| 295-441, gnl|rn3|chr3 (170542925-170543040) | |
| 295-441, gnl|tetNig1|chr14 (6370102-6369990) | |
| 295-441, gnl|tetNig1|chrUn_random (71720334-71720131) | |
| 506-608, gnl|bosTau2|chr13 (35234870-35234768) | |
| 506-608, gnl|canFam2|chr24 (50410370-50410454) | |
| 506-608, gnl|dasNov1|scaffold_3054 (35488-35397) | |
| 506-608, gnl|echTel1|scaffold_237979 (4557-4466) | |
| 506-608, gnl|hg17|chr12 (131932438-131932546) | |
| 506-608, gnl|Hg17|chr20 (61984516-61984618) | |
| 506-608, gnl|mm7|chr2 (182009086-182009177) | |
| 506-608, gnl|Mm7|chr2 (182009078-182009180) | |
| 506-608, gnl|monDom2|scaffold_1 (184659537-184659628) | |
| 506-608, gnl|oryCun1|scaffold_177073 (16381-16305) | |
| 506-608, gnl|panTro1|chr10 (134789425-134789533) | |
| 506-608, gnl|rheMac2|chr15 (70810479-70810392) | |
| 506-608, gnl|rn3|chr3 (170548901-170548992) | |
| 506-608, gnl|tetNig1|chrUn_random (71720074-71720015) | |
| 655-813, gnl|bosTau2|chr13 (35229607-35229447) | |
| 655-813, gnl|canFam2|chr24 (50416103-50416355) | |
| 655-813, gnl|canFam2|chr24 (50416102-50416205) | |
| 655-813, gnl|dasNov1|scaffold_106239 (845-741) | |
| 655-813, gnl|dasNov1|scaffold_3054 (35323-35082) | |
| 655-813, gnl|galGal2|chrUn (56597709-56597954) | |
| 655-813, gnl|galGal2|chrUn (56597709-56597809) | |
| 655-813, gnl|hg17|chr12 (131932597-131932842) | |
| 655-813, gnl|hg17|chr20 (61991646-61991749) | |
| 655-813, gnl|Hg17|chr20 (61991645-61991809) | |
| 655-813, gnl|loxAfr1|scaffold_20637 (30340-30109) | |
| 655-813, gnl|loxAfr1|scaffold_20637 (30340-30238) | |
| 655-813, gnl|mm7|chr2 (182015991-182016235) | |
| 655-813, gnl|mm7|chr2 (182015991-182016094) | |
| 655-813, gnl|Mm7|chr2 (182015990-182016152) | |
| 655-813, gnl|monDom2|scaffold_1 (184668776-184669046) | |
| 655-813, gnl|monDom2|scaffold_1 (184668776-184668880) | |
| 655-813, gnl|oryCun1|scaffold_177073 (16254-15921) | |
| 655-813, gnl|oryCun1|scaffold_177073 (16254-16097) | |
| 655-813, gnl|panTro1|chr10 (134789584-134789829) | |
| 655-813, gnl|panTro1|chr21 (65064422-65064525) | |
| 655-813, gnl|rheMac2|chr10 (457046-456800) | |
| 655-813, gnl|rheMac2|chr10 (457046-456943) | |
| 655-813, gnl|rn3|chr3 (170555751-170555994) | |
| 655-813, gnl|rn3|chr3 (170555751-170555854) | |
| 655-813, gnl|tetNig1|chrUn_random (86690115-86690214) | |
| 960-1285, gnl|bosTau2|chr13 (35229286-35228953) | |
| 960-1285, gnl|canFam2|chr24 (50416412-50416861) | |
| 960-1285, gnl|dasNov1|scaffold_106239 (543-69) | |
| 960-1285, gnl|echTel1|scaffold_258463 (2765-3195) | |
| 960-1285, gnl|galGal2|chrUn (56598018-56598568) | |
| 960-1285, gnl|hg17|chr20 (61991952-61992442) | |
| 960-1285, gnl|Hg17|chr20 (61992020-61992373) | |
| 960-1285, gnl|loxAfr1|scaffold_20637 (30055-29570) | |
| 960-1285, gnl|mm7|chr2 (182016287-182016765) | |
| 960-1285, gnl|Mm7|chr2 (182016364-182016693) | |
| 960-1285, gnl|monDom2|scaffold_1 (184669107-184669643) | |
| 960-1285, gnl|oryCun1|scaffold_177073 (15865-15417) | |
| 960-1285, gnl|panTro1|chr21 (65064728-65065205) | |
| 960-1285, gnl|rheMac2|chr10 (456742-456254) | |
| 960-1285, gnl|rn3|chr3 (170556046-170556518) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| pla (0.534688) | |
| amn (0.417711) | |
| hyp (0.285673) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| amn (0.417711) | |
| hyp (0.285673) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) |