Ss1.1-Liv1-LVR010011C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGGGCGGTCATTGGGCGGCGTGATCTCGCCGCGGTTCCGCGGCCCTGCCGCCGCCGC CGCCGCCGCCAGCAGAGAGCACCGGGCGGGCCAGGCGAGTGGCCATGGCGGGCGCGGAAG ACGGACCGGGCCAGCAGCTGGAGCTCGACGAGGACGAGGCGGCGTATTGCCGGCGCTGGG GCGCGCAGCATGCCGGGGCCCGCGAGCTGGCCGCGCTCTACTCACCAGGCAAGCGCTTCC AGGAGTGGTGCAGTGTGATCCTCTGCTTTAGCCTCATCGCTCACAACATGGTCCACCTCC TGCTGCTGGCCCGCTGGGAGCACACGCCCCTTGTAATGCTGGGTGTCGTTGCAGGGGCGC TCATTGCTGACTTCTTGTCTGGCCTGGTGCACTGGGGAGCCGACACCTGGGGCTCCGTGG AACTGCCCATTGTGGGGAAGGCTTTCATCCGACCCTTCCGAGAGCATCACATCGACCCAA CAGCCATTACAAGGCATGACTTCATCGAGACCAATGGGGACAACTGCCTGGTGACGCTCC TGCCACTGTTAAACATGGCCTACAAGTTCCGCACCCAGAGCCCAGAAGCCCTGGAGCAGC TGTACCCCTGGGAATGCTTCATCTTCTGCCTGGTCATCTTTGTCACCTTCACCAATCAGA TCCACAAGTGGTCGCACACATACTTTGGGCTGCCGAGCTGGGTCATCCTCCTGCAGGACT GGCATGTCATCCTGCCCCGTAAACATCATCGCATCCACCATGTCTCACCCCACGAGACCT ACTTCTGCATCACCACAGGCTGGCTCAACTACCCTCTGGAGAAGATGGGCTTCTGGCGAC GCCTAGAAGACATCATCCAAGGCCTGACAGGCGAGAAGCCTCGGGCGGACGACATGAAAT GGGCACAGAAGATTAAATAAGTCGTCTGTGCCGCCACCTTATTGCCAACCTTCCCCAGCT CCCCTAAACCGAAGCCATCTGCCAAATTCCAGCCTCCTTGCACTGGCCCCTCTAGGTGGA GAGGACATCTCCTGGGCTGGGCCCAGGCACCCCCAGCCCACCCCTTGTGACAGAGAATAC TTGAGCCACTGGTTTTTTCATTTTCTTTCATTTTTTTTCCTTGGCCCCTCCCCAGCCACC TGAGCTGTTCTGTCTGCCAAGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGGGCGGTCATTGGGCGGCGTGATCTCGCCGCGGTTCCGCGGCCCTGCCGCCGCCGC CGCCGCCGCCAGCAGAGAGCACCGGGCGGGCCAGGCGAGTGGCCATGGCGGGCGCGGAAG ACGGACCGGGCCAGCAGCTGGAGCTCGACGAGGACGAGGCGGCGTATTGCCGGCGCTGGG GCGCGCAGCATGCCGGGGCCCGCGAGCTGGCCGCGCTCTACTCACCAGGCAAGCGCTTCC AGGAGTGGTGCAGTGTGATCCTCTGCTTTAGCCTCATCGCTCACAACATGGTCCACCTCC TGCTGCTGGCCCGCTGGGAGCACACGCCCCTTGTAATGCTGGGTGTCGTTGCAGGGGCGC TCATTGCTGACTTCTTGTCTGGCCTGGTGCACTGGGGAGCCGACACCTGGGGCTCCGTGG AACTGCCCATTGTGGGGAAGGCTTTCATCCGACCCTTCCGAGAGCATCACATCGACCCAA CAGCCATTACAAGGCATGACTTCATCGAGACCAATGGGGACAACTGCCTGGTGACGCTCC TGCCACTGTTAAACATGGCCTACAAGTTCCGCACCCAGAGCCCAGAAGCCCTGGAGCAGC TGTACCCCTGGGAATGCTTCATCTTCTGCCTGGTCATCTTTGTCACCTTCACCAATCAGA TCCACAAGTGGTCGCACACATACTTTGGGCTGCCGAGCTGGGTCATCCTCCTGCAGGACT GGCATGTCATCCTGCCCCGTAAACATCATCGCATCCACCATGTCTCACCCCACGAGACCT ACTTCTGCATCACCACAGGCTGGCTCAACTACCCTCTGGAGAAGATGGGCTTCTGGCGAC GCCTAGAAGACATCATCCAAGGCCTGACAGGCGAGAAGCCTCGGGCGGACGACATGAAAT GGGCACAGAAGATTAAATAAGTCGTCTGTGCCGCCACCTTATTGCCAACCTTCCCCAGCT CCCCTAAACCGAAGCCATCTGCCAAATTCCAGCCTCCTTGCACTGGCCCCTCTAGGTGGA GAGGACATCTCCTGGGCTGGGCCCAGGCACCCCCAGCCCACCCCTTGTGACAGAGAATAC TTGAGCCACTGGTTTTTTCATTTTCTTTCATTTTTTTTCCTTGGCCCCTCCCCAGCCACC TGAGCTGTTCTGTCTGCCAAGCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 954-1144, - strand, RNAz p=0.999767 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 954-1144, - strand, RNAz p=0.999767 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 2-229, gnl|bosTau2|chr13 (59707629-59707862) | |
| 2-229, gnl|Hg17|chr20 (48203678-48203460) | |
| 2-229, gnl|Mm7|chr2 (167454242-167454026) | |
| 439-585, gnl|bosTau2|chr13 (59728465-59728611) | |
| 439-585, gnl|canFam2|chr24 (39592013-39592135) | |
| 439-585, gnl|danRer3|chr8 (18525379-18525485) | |
| 439-585, gnl|dasNov1|scaffold_35630 (2242-2135) | |
| 439-585, gnl|echTel1|scaffold_234590 (353-229) | |
| 439-585, gnl|fr1|chrUn (110775542-110775435) | |
| 439-585, gnl|galGal2|chr20 (13340450-13340349) | |
| 439-585, gnl|hg17|chr20 (48179463-48179587) | |
| 439-585, gnl|Hg17|chr20 (48179636-48179490) | |
| 439-585, gnl|mm7|chr2 (167438661-167438783) | |
| 439-585, gnl|Mm7|chr2 (167438832-167438686) | |
| 439-585, gnl|monDom2|scaffold_1 (161705565-161705682) | |
| 439-585, gnl|oryCun1|scaffold_190149 (2387-2501) | |
| 439-585, gnl|rheMac2|chr10 (14341352-14341228) | |
| 439-585, gnl|rn3|chr3 (158687587-158687709) | |
| 439-585, gnl|tetNig1|chr9 (9282078-9281977) | |
| 439-585, gnl|xenTro1|scaffold_165 (582174-582076) | |
| 796-1164, gnl|bosTau2|chr13 (59732216-59732590) | |
| 796-1164, gnl|Hg17|chr20 (48175126-48174762) | |
| 796-1164, gnl|Mm7|chr2 (167384839-167384484) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-229, gnl|bosTau2|chr13 (59707629-59707862) | |
| 2-229, gnl|Hg17|chr20 (48203678-48203460) | |
| 2-229, gnl|Mm7|chr2 (167454242-167454026) | |
| 439-585, gnl|bosTau2|chr13 (59728465-59728611) | |
| 439-585, gnl|canFam2|chr24 (39592013-39592135) | |
| 439-585, gnl|danRer3|chr8 (18525379-18525485) | |
| 439-585, gnl|dasNov1|scaffold_35630 (2242-2135) | |
| 439-585, gnl|echTel1|scaffold_234590 (353-229) | |
| 439-585, gnl|fr1|chrUn (110775542-110775435) | |
| 439-585, gnl|galGal2|chr20 (13340450-13340349) | |
| 439-585, gnl|hg17|chr20 (48179463-48179587) | |
| 439-585, gnl|Hg17|chr20 (48179636-48179490) | |
| 439-585, gnl|mm7|chr2 (167438661-167438783) | |
| 439-585, gnl|Mm7|chr2 (167438832-167438686) | |
| 439-585, gnl|monDom2|scaffold_1 (161705565-161705682) | |
| 439-585, gnl|oryCun1|scaffold_190149 (2387-2501) | |
| 439-585, gnl|rheMac2|chr10 (14341352-14341228) | |
| 439-585, gnl|rn3|chr3 (158687587-158687709) | |
| 439-585, gnl|tetNig1|chr9 (9282078-9281977) | |
| 439-585, gnl|xenTro1|scaffold_165 (582174-582076) | |
| 796-1164, gnl|bosTau2|chr13 (59732216-59732590) | |
| 796-1164, gnl|Hg17|chr20 (48175126-48174762) | |
| 796-1164, gnl|Mm7|chr2 (167384839-167384484) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| clu (0.478583) | |
| cly (0.241284) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| che (0.136314) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| cly (0.241284) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| che (0.136314) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |