Ss1.1-Liv1-LVR010011C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCTCGCGTTTACAGACAGCTGATCATGGAGGCGAACGAGTCTGGTCCCCAGGGTTTT CCGGAGCTGAAGAATGACACCTTCCTGCGAGCAGCCTGGGGAGAAGAAACAGACTACACT CCGGTTTGGTGCATGCGGCAGGCAGGCCGCTACTTACCAGAGTTTAGGGAAACCAGGGCT GCCCAGGACTTTTTCAGCACCTGTCGATCTCCAGAGGTGTGCTGTGAACTGACGCTGCAG CCACTGCGTCGCTTCCCCCTGGATGCTGCCATCATCTTCTCCGACATCCTCGTTGTACCC CAGGCACTGGGCATGGAGGTGACTATGGTGCCTGGCAAAGGGCCCAGCTTCCCAGAGCCA TTACGAGAAGAGCGAGACTTAGAGCGCCTCCGGGACCCAGCAACAGTGGCCTCTGAGCTG GACTATGTGTTCCAGGCCATCACCCTCACTCGGCAACGACTGGCTGGGCGAGTGCCACTG ATTGGCTTTGCTGGTGCCCCGTGGACTCTGATGACATACATGGTTGAGGGTGGCGGCTCA AACACCATGGCTCAGGCCAAGCGCTGGCTTTACCAGAGGCCGCAGGCCAGTCACCAGCTG CTTCGCATCCTCACTGATGCTCTTGTCCCGTACCTGGTGGGACAGGTGGCTGCTGGTGCC CAGGCATTGCAGCTCTTTGAGTCCCATGCAGGGCATCTTGGCCCACAGCTCTTCAATAAA TTTGCACTGCCCTACATCCGTGATGTGGCCAAGCGAGTGAAGGCCGGGCTGCAGGAGGCA GGCCTGGCACCAGTGCCCATGATCATCTTTGCTAAGGATGGACATTTTGCCCTGGAGGAA CTGGCCCAGGCTGGCTACGAGGTGGTTGGGCTTGACTGGACAGTGGCTCCAGAGAAAGCC CGGGACCGTGTGGGGAAGACAGTGACCCTGCAGGGCAACCTGGACCCCTGTGCCCTGTAT GCATCTGAGGAGGAGATTGGACAGCTGGTGCAGCAGATGCTCAGTGACTTTGGGCCACAG CGCTACATTGCCAACCTGGGCCACGGACTTTACCCTGACATGGACCCAGAGCACGTGGGG GCCTTTGTGGACGCCGTGCACAGACACTCACGTCTGCTTCGACAGAACTGAACAGACATC TTTTCCCTGAGGCGCCACTAACACAGATGATTGTTTCAGGAGAATAAACGTCCAGAGTTG GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCTCGCGTTTACAGACAGCTGATCATGGAGGCGAACGAGTCTGGTCCCCAGGGTTTT CCGGAGCTGAAGAATGACACCTTCCTGCGAGCAGCCTGGGGAGAAGAAACAGACTACACT CCGGTTTGGTGCATGCGGCAGGCAGGCCGCTACTTACCAGAGTTTAGGGAAACCAGGGCT GCCCAGGACTTTTTCAGCACCTGTCGATCTCCAGAGGTGTGCTGTGAACTGACGCTGCAG CCACTGCGTCGCTTCCCCCTGGATGCTGCCATCATCTTCTCCGACATCCTCGTTGTACCC CAGGCACTGGGCATGGAGGTGACTATGGTGCCTGGCAAAGGGCCCAGCTTCCCAGAGCCA TTACGAGAAGAGCGAGACTTAGAGCGCCTCCGGGACCCAGCAACAGTGGCCTCTGAGCTG GACTATGTGTTCCAGGCCATCACCCTCACTCGGCAACGACTGGCTGGGCGAGTGCCACTG ATTGGCTTTGCTGGTGCCCCGTGGACTCTGATGACATACATGGTTGAGGGTGGCGGCTCA AACACCATGGCTCAGGCCAAGCGCTGGCTTTACCAGAGGCCGCAGGCCAGTCACCAGCTG CTTCGCATCCTCACTGATGCTCTTGTCCCGTACCTGGTGGGACAGGTGGCTGCTGGTGCC CAGGCATTGCAGCTCTTTGAGTCCCATGCAGGGCATCTTGGCCCACAGCTCTTCAATAAA TTTGCACTGCCCTACATCCGTGATGTGGCCAAGCGAGTGAAGGCCGGGCTGCAGGAGGCA GGCCTGGCACCAGTGCCCATGATCATCTTTGCTAAGGATGGACATTTTGCCCTGGAGGAA CTGGCCCAGGCTGGCTACGAGGTGGTTGGGCTTGACTGGACAGTGGCTCCAGAGAAAGCC CGGGACCGTGTGGGGAAGACAGTGACCCTGCAGGGCAACCTGGACCCCTGTGCCCTGTAT GCATCTGAGGAGGAGATTGGACAGCTGGTGCAGCAGATGCTCAGTGACTTTGGGCCACAG CGCTACATTGCCAACCTGGGCCACGGACTTTACCCTGACATGGACCCAGAGCACGTGGGG GCCTTTGTGGACGCCGTGCACAGACACTCACGTCTGCTTCGACAGAACTGAACAGACATC TTTTCCCTGAGGCGCCACTAACACAGATGATTGTTTCAGGAGAATAAACGTCCAGAGTTG GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 300-396, + strand, RNAz p=0.650172 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 300-396, + strand, RNAz p=0.650172 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 49-160, gnl|bosTau2|chr3 (68332995-68333106) | |
| 49-160, gnl|canFam2|chr15 (18321815-18321686) | |
| 49-160, gnl|dasNov1|scaffold_51052 (12301-12171) | |
| 49-160, gnl|echTel1|scaffold_299536 (1882-1752) | |
| 49-160, gnl|fr1|chrUn (287704225-287704095) | |
| 49-160, gnl|galGal2|chr8 (21191284-21191405) | |
| 49-160, gnl|hg17|chr1 (45147659-45147789) | |
| 49-160, gnl|Hg17|chr1 (45147673-45147784) | |
| 49-160, gnl|loxAfr1|scaffold_30766 (3364-3494) | |
| 49-160, gnl|mm7|chr4 (116370151-116370021) | |
| 49-160, gnl|Mm7|chr4 (116370135-116370024) | |
| 49-160, gnl|monDom2|scaffold_70 (7800825-7800692) | |
| 49-160, gnl|oryCun1|scaffold_148919 (1698-1828) | |
| 49-160, gnl|panTro1|chr1_random (65524829-65524699) | |
| 49-160, gnl|rheMac2|chr1 (47941889-47942019) | |
| 49-160, gnl|rn3|chr5 (137305049-137304919) | |
| 49-160, gnl|tetNig1|chrUn_random (16194788-16194905) | |
| 49-160, gnl|xenTro1|scaffold_1 (7466964-7467084) | |
| 300-501, gnl|bosTau2|chr3 (68333658-68333859) | |
| 300-501, gnl|canFam2|chr15 (18321162-18320948) | |
| 300-501, gnl|danRer3|chr17 (40322043-40321837) | |
| 300-501, gnl|dasNov1|scaffold_51052 (11611-11397) | |
| 300-501, gnl|echTel1|scaffold_299536 (1257-1041) | |
| 300-501, gnl|fr1|chrUn (287703389-287703178) | |
| 300-501, gnl|galGal2|chr8 (21191976-21192195) | |
| 300-501, gnl|hg17|chr1 (45148347-45148561) | |
| 300-501, gnl|Hg17|chr1 (45148355-45148556) | |
| 300-501, gnl|loxAfr1|scaffold_30766 (4059-4273) | |
| 300-501, gnl|mm7|chr4 (116369476-116369262) | |
| 300-501, gnl|Mm7|chr4 (116369466-116369265) | |
| 300-501, gnl|monDom2|scaffold_70 (7799817-7799587) | |
| 300-501, gnl|oryCun1|scaffold_148919 (2382-2603) | |
| 300-501, gnl|panTro1|chr1_random (65524141-65523927) | |
| 300-501, gnl|rheMac2|chr1 (47942571-47942785) | |
| 300-501, gnl|rn3|chr5 (137304364-137304150) | |
| 300-501, gnl|tetNig1|chrUn_random (16195259-16195470) | |
| 300-501, gnl|xenTro1|scaffold_1 (7471241-7471455) | |
| 662-801, gnl|bosTau2|chr3 (68334480-68334619) | |
| 662-801, gnl|canFam2|chr15 (18320313-18320138) | |
| 662-801, gnl|dasNov1|scaffold_211107 (706-531) | |
| 662-801, gnl|echTel1|scaffold_299536 (472-299) | |
| 662-801, gnl|fr1|chrUn (287702189-287702010) | |
| 662-801, gnl|galGal2|chr8 (21192691-21192879) | |
| 662-801, gnl|hg17|chr1 (45149193-45149366) | |
| 662-801, gnl|Hg17|chr1 (45149202-45149341) | |
| 662-801, gnl|loxAfr1|scaffold_30766 (4896-5070) | |
| 662-801, gnl|mm7|chr4 (116368208-116368037) | |
| 662-801, gnl|Mm7|chr4 (116368199-116368060) | |
| 662-801, gnl|monDom2|scaffold_70 (7799355-7799179) | |
| 662-801, gnl|panTro1|chr1_random (65523296-65523123) | |
| 662-801, gnl|rheMac2|chr1 (47943422-47943595) | |
| 662-801, gnl|rn3|chr5 (137303142-137302971) | |
| 662-801, gnl|xenTro1|scaffold_1 (7472593-7472758) | |
| 913-1200, gnl|bosTau2|chr3 (68335294-68335582) | |
| 913-1200, gnl|Hg17|chr1 (45150047-45150338) | |
| 913-1200, gnl|Mm7|chr4 (116366943-116366658) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-160, gnl|bosTau2|chr3 (68332995-68333106) | |
| 49-160, gnl|canFam2|chr15 (18321815-18321686) | |
| 49-160, gnl|dasNov1|scaffold_51052 (12301-12171) | |
| 49-160, gnl|echTel1|scaffold_299536 (1882-1752) | |
| 49-160, gnl|fr1|chrUn (287704225-287704095) | |
| 49-160, gnl|galGal2|chr8 (21191284-21191405) | |
| 49-160, gnl|hg17|chr1 (45147659-45147789) | |
| 49-160, gnl|Hg17|chr1 (45147673-45147784) | |
| 49-160, gnl|loxAfr1|scaffold_30766 (3364-3494) | |
| 49-160, gnl|mm7|chr4 (116370151-116370021) | |
| 49-160, gnl|Mm7|chr4 (116370135-116370024) | |
| 49-160, gnl|monDom2|scaffold_70 (7800825-7800692) | |
| 49-160, gnl|oryCun1|scaffold_148919 (1698-1828) | |
| 49-160, gnl|panTro1|chr1_random (65524829-65524699) | |
| 49-160, gnl|rheMac2|chr1 (47941889-47942019) | |
| 49-160, gnl|rn3|chr5 (137305049-137304919) | |
| 49-160, gnl|tetNig1|chrUn_random (16194788-16194905) | |
| 49-160, gnl|xenTro1|scaffold_1 (7466964-7467084) | |
| 300-501, gnl|bosTau2|chr3 (68333658-68333859) | |
| 300-501, gnl|canFam2|chr15 (18321162-18320948) | |
| 300-501, gnl|danRer3|chr17 (40322043-40321837) | |
| 300-501, gnl|dasNov1|scaffold_51052 (11611-11397) | |
| 300-501, gnl|echTel1|scaffold_299536 (1257-1041) | |
| 300-501, gnl|fr1|chrUn (287703389-287703178) | |
| 300-501, gnl|galGal2|chr8 (21191976-21192195) | |
| 300-501, gnl|hg17|chr1 (45148347-45148561) | |
| 300-501, gnl|Hg17|chr1 (45148355-45148556) | |
| 300-501, gnl|loxAfr1|scaffold_30766 (4059-4273) | |
| 300-501, gnl|mm7|chr4 (116369476-116369262) | |
| 300-501, gnl|Mm7|chr4 (116369466-116369265) | |
| 300-501, gnl|monDom2|scaffold_70 (7799817-7799587) | |
| 300-501, gnl|oryCun1|scaffold_148919 (2382-2603) | |
| 300-501, gnl|panTro1|chr1_random (65524141-65523927) | |
| 300-501, gnl|rheMac2|chr1 (47942571-47942785) | |
| 300-501, gnl|rn3|chr5 (137304364-137304150) | |
| 300-501, gnl|tetNig1|chrUn_random (16195259-16195470) | |
| 300-501, gnl|xenTro1|scaffold_1 (7471241-7471455) | |
| 662-801, gnl|bosTau2|chr3 (68334480-68334619) | |
| 662-801, gnl|canFam2|chr15 (18320313-18320138) | |
| 662-801, gnl|dasNov1|scaffold_211107 (706-531) | |
| 662-801, gnl|echTel1|scaffold_299536 (472-299) | |
| 662-801, gnl|fr1|chrUn (287702189-287702010) | |
| 662-801, gnl|galGal2|chr8 (21192691-21192879) | |
| 662-801, gnl|hg17|chr1 (45149193-45149366) | |
| 662-801, gnl|Hg17|chr1 (45149202-45149341) | |
| 662-801, gnl|loxAfr1|scaffold_30766 (4896-5070) | |
| 662-801, gnl|mm7|chr4 (116368208-116368037) | |
| 662-801, gnl|Mm7|chr4 (116368199-116368060) | |
| 662-801, gnl|monDom2|scaffold_70 (7799355-7799179) | |
| 662-801, gnl|panTro1|chr1_random (65523296-65523123) | |
| 662-801, gnl|rheMac2|chr1 (47943422-47943595) | |
| 662-801, gnl|rn3|chr5 (137303142-137302971) | |
| 662-801, gnl|xenTro1|scaffold_1 (7472593-7472758) | |
| 913-1200, gnl|bosTau2|chr3 (68335294-68335582) | |
| 913-1200, gnl|Hg17|chr1 (45150047-45150338) | |
| 913-1200, gnl|Mm7|chr4 (116366943-116366658) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| eli (0.607257) | |
| nbm (0.595948) | |
| ton (0.351) | |
| lnt (0.284616) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| cov (0.264306) | |
| eru (0.240096) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| che (0.136314) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.607257) | |
| nbm (0.595948) | |
| ton (0.351) | |
| lnt (0.284616) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| cov (0.264306) | |
| eru (0.240096) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| che (0.136314) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cty (0.10408) |