Ss1.1-Liv1-LVR010011F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGGAAGCTGGCAAACAAGATTTAGCGGCAGCGGCCCCGCAGACTTACTGTACACATG ATAGGATCCAGGGCAGCTGGACCAAGGCAGCAGTTACAGCCGGAACCCACTGCAGACCGG CCTGGCCGTCCCGGACAATGCTGCTCACCCTGTATGCCTGTCTCCTCTGGCTGTCGACCA GCGGGCTCTGGACCAGCCAGGCTAAGGACCCTGACAGTGACTTGAGCACAAGGAGCCGTC ACCGGAACTTGGCTCCAAACAACGTGGACTTTGCCTTTGCCCTGTATAAGCACCTGGTGG CCTCAGCTCCTGGCAAGGACGTCTTCCTCTCCCCTGTGAGCATCTCCACAGCCTTGGCTA TGCTGTCACTAGGTGCCAGTGGCTACACACGGGAGCAGCTTCTCCAAGGCCTAGGCTTCA ACCTCACTGAGACCCCCGAAGCTGAGATCCATCAGGACTTCCAGCATCTCCACTCTCTCC TCAAGGGGTCAAACATCACCTCAGAAATGACCATGGGCAATGCCTTGTTCCTCGACCGCA GTCTGGAGCTTCTGGAGTCCTTCTCCACAGGCTCCAAGCACTACTACGGGTTGGAAGCCT TGGCTGCCGATTTCCAGGACTGGGCAGGAGCCAGCAGACAAATTAATGAGTATATCAAGA ATAAGACACAAGGGAAAATTGTGGACTTGTTCTTGGAGCAGGATAGCTCAGCCATGCTCA TCCTGATCAACTATATCTTCTTTAAAGGCACATGGACACACTCCTTCCCCCCAGAAAGCA CCAGGGAAGAGAACTTCTATGTGAACGAGACGGCCACGGTCAAGGTGCCCATGATGTTCC AGTCGCGCGCCATGAAGTACTTGAATGACTCCTTGCTCCCCTGCCAGCTGGTGCAGCTGG AATACACGGGCAATGAGACGGCCTTCTTCATCCTCCCGGTCAAGGGGGAGATGGACACGG TCATTGCCGGGCTGAGCCGGGACACCATTCAGAGGTGGTCGAAGTCCCTGATCCCCAGCC AGGTGGACCTGTACGTCCCAAAGGTCTCCATCTCCAGAGCCTATGACCTCGGGAGCATCC TGGGGGACATGGGCATTGTGGACTTGCTCAGCCACCCAACACACTTCTCAGGCATCACCC AGAATGCCCTGCCGAAGATGTCCAAGGTGGTCCACAAGGCAGTTCTGCAATTTGACGAGA AGGGCATGGAGGCAGCTGCCCCCACTACGCGTGGACGCAGCCTGCACGCGGCGCCCAAGC CTGTCACTGTCCACTTCAACCGGCCCTTCATCGTCATGGTTTTCGACCACTTCACGTGGA GCAGCCTTTTCCTGGGCAAGATTGTGAATCTGACCTAAGAGGAGGCGCCTTAGGAACCAC AGCTCATCTGACTCTGGCATCAGGGACCCCAAAGAAATGTTCTGGGTGGTGGGTCGTTTC CCCCAGTCTCTCCCAGGTTCTCCTGCTGGAATAAATGTCATTGCGACTGATGCCAAGTGT GGTGGAAGGGGAAGGTGGGACAACTGATAAAATTAGAATAATATCAATATAATCTCAATA TAATACTGTACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGGAAGCTGGCAAACAAGATTTAGCGGCAGCGGCCCCGCAGACTTACTGTACACATG ATAGGATCCAGGGCAGCTGGACCAAGGCAGCAGTTACAGCCGGAACCCACTGCAGACCGG CCTGGCCGTCCCGGACAATGCTGCTCACCCTGTATGCCTGTCTCCTCTGGCTGTCGACCA GCGGGCTCTGGACCAGCCAGGCTAAGGACCCTGACAGTGACTTGAGCACAAGGAGCCGTC ACCGGAACTTGGCTCCAAACAACGTGGACTTTGCCTTTGCCCTGTATAAGCACCTGGTGG CCTCAGCTCCTGGCAAGGACGTCTTCCTCTCCCCTGTGAGCATCTCCACAGCCTTGGCTA TGCTGTCACTAGGTGCCAGTGGCTACACACGGGAGCAGCTTCTCCAAGGCCTAGGCTTCA ACCTCACTGAGACCCCCGAAGCTGAGATCCATCAGGACTTCCAGCATCTCCACTCTCTCC TCAAGGGGTCAAACATCACCTCAGAAATGACCATGGGCAATGCCTTGTTCCTCGACCGCA GTCTGGAGCTTCTGGAGTCCTTCTCCACAGGCTCCAAGCACTACTACGGGTTGGAAGCCT TGGCTGCCGATTTCCAGGACTGGGCAGGAGCCAGCAGACAAATTAATGAGTATATCAAGA ATAAGACACAAGGGAAAATTGTGGACTTGTTCTTGGAGCAGGATAGCTCAGCCATGCTCA TCCTGATCAACTATATCTTCTTTAAAGGCACATGGACACACTCCTTCCCCCCAGAAAGCA CCAGGGAAGAGAACTTCTATGTGAACGAGACGGCCACGGTCAAGGTGCCCATGATGTTCC AGTCGCGCGCCATGAAGTACTTGAATGACTCCTTGCTCCCCTGCCAGCTGGTGCAGCTGG AATACACGGGCAATGAGACGGCCTTCTTCATCCTCCCGGTCAAGGGGGAGATGGACACGG TCATTGCCGGGCTGAGCCGGGACACCATTCAGAGGTGGTCGAAGTCCCTGATCCCCAGCC AGGTGGACCTGTACGTCCCAAAGGTCTCCATCTCCAGAGCCTATGACCTCGGGAGCATCC TGGGGGACATGGGCATTGTGGACTTGCTCAGCCACCCAACACACTTCTCAGGCATCACCC AGAATGCCCTGCCGAAGATGTCCAAGGTGGTCCACAAGGCAGTTCTGCAATTTGACGAGA AGGGCATGGAGGCAGCTGCCCCCACTACGCGTGGACGCAGCCTGCACGCGGCGCCCAAGC CTGTCACTGTCCACTTCAACCGGCCCTTCATCGTCATGGTTTTCGACCACTTCACGTGGA GCAGCCTTTTCCTGGGCAAGATTGTGAATCTGACCTAAGAGGAGGCGCCTTAGGAACCAC AGCTCATCTGACTCTGGCATCAGGGACCCCAAAGAAATGTTCTGGGTGGTGGGTCGTTTC CCCCAGTCTCTCCCAGGTTCTCCTGCTGGAATAAATGTCATTGCGACTGATGCCAAGTGT GGTGGAAGGGGAAGGTGGGACAACTGATAAAATTAGAATAATATCAATATAATCTCAATA TAATACTGTACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 318-477, - strand, RNAz p=0.702776 | |
| 1309-1420, + strand, RNAz p=0.680616 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 318-477, - strand, RNAz p=0.702776 | |
| 1309-1420, + strand, RNAz p=0.680616 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr21 (38921686-38921568) | |
| 1-119, gnl|canFam2|chr8 (66381280-66381485) | |
| 1-119, gnl|echTel1|scaffold_290352 (17586-17374) | |
| 1-119, gnl|hg17|chr14 (93859279-93859487) | |
| 1-119, gnl|Hg17|chr14 (93859476-93859356) | |
| 1-119, gnl|mm7|chr12 (101151067-101151292) | |
| 1-119, gnl|Mm7|chr12 (101151281-101151164) | |
| 1-119, gnl|oryCun1|scaffold_152638 (242-31) | |
| 1-119, gnl|panTro1|chr15 (94307811-94308023) | |
| 1-119, gnl|rheMac2|chr7 (157549624-157549836) | |
| 1-119, gnl|rn3|chr6 (127925441-127925676) | |
| 121-751, gnl|bosTau2|chr21 (38910222-38909592) | |
| 121-751, gnl|Hg17|chr14 (93850755-93850122) | |
| 121-751, gnl|Mm7|chr12 (101148633-101148021) | |
| 1165-1553, gnl|bosTau2|chr21 (38897897-38897521) | |
| 1165-1553, gnl|canFam2|chr8 (66364133-66363885) | |
| 1165-1553, gnl|Hg17|chr14 (93840695-93840305) | |
| 1165-1553, gnl|hg17|chr8 (112462093-112462338) | |
| 1165-1553, gnl|loxAfr1|scaffold_39757 (15946-15693) | |
| 1165-1553, gnl|mm7|chr12 (101141164-101140932) | |
| 1165-1553, gnl|oryCun1|scaffold_187744 (6982-7228) | |
| 1165-1553, gnl|panTro1|chr7 (114964257-114964499) | |
| 1165-1553, gnl|rheMac2|chr8 (113825636-113825879) | |
| 1165-1553, gnl|rn3|chr6 (127915754-127915530) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr21 (38921686-38921568) | |
| 1-119, gnl|canFam2|chr8 (66381280-66381485) | |
| 1-119, gnl|echTel1|scaffold_290352 (17586-17374) | |
| 1-119, gnl|hg17|chr14 (93859279-93859487) | |
| 1-119, gnl|Hg17|chr14 (93859476-93859356) | |
| 1-119, gnl|mm7|chr12 (101151067-101151292) | |
| 1-119, gnl|Mm7|chr12 (101151281-101151164) | |
| 1-119, gnl|oryCun1|scaffold_152638 (242-31) | |
| 1-119, gnl|panTro1|chr15 (94307811-94308023) | |
| 1-119, gnl|rheMac2|chr7 (157549624-157549836) | |
| 1-119, gnl|rn3|chr6 (127925441-127925676) | |
| 121-751, gnl|bosTau2|chr21 (38910222-38909592) | |
| 121-751, gnl|Hg17|chr14 (93850755-93850122) | |
| 121-751, gnl|Mm7|chr12 (101148633-101148021) | |
| 1165-1553, gnl|bosTau2|chr21 (38897897-38897521) | |
| 1165-1553, gnl|canFam2|chr8 (66364133-66363885) | |
| 1165-1553, gnl|Hg17|chr14 (93840695-93840305) | |
| 1165-1553, gnl|hg17|chr8 (112462093-112462338) | |
| 1165-1553, gnl|loxAfr1|scaffold_39757 (15946-15693) | |
| 1165-1553, gnl|mm7|chr12 (101141164-101140932) | |
| 1165-1553, gnl|oryCun1|scaffold_187744 (6982-7228) | |
| 1165-1553, gnl|panTro1|chr7 (114964257-114964499) | |
| 1165-1553, gnl|rheMac2|chr8 (113825636-113825879) | |
| 1165-1553, gnl|rn3|chr6 (127915754-127915530) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.811524) | |
| eli (0.455443) | |
| cli (0.152812) |