Non-Coding RNA Search

Ss1.1-Liv1-LVR010011F03.5

Sequence:


               
               CGTGGGGGCTGGGCTTCCGGCCGGCGGAGGTGGGGACCGCTGCTCTGGGGGGGTGGGGTG
GACCCTGGGTCGTGACCCGCACCCCTACGTGCTGTGCTAATTCTACCGCGGCTCCCACCC
GTGTCTTGACCCCTGCCCACCGGTATGGCTCGGCACGTGTTCCTGACTGGGCCCCCAGGA
GTTGGAAAAACAACATTGATCCAGAAAGCCAGTGAAGCTCTAAAATCCTCTGGTGTGCCT
GTCGATGGATTTTATACAGAAGAAGTCAGACAGGGAGGAAGAAGAATAGGATTCGATGTT
GTCACGTTATCTGGCATGCGGGGACCTCTGTCTCGGATTGGGTCCACGCCTCCACCTGGA
AAGCGTGAGTGCCGAGTGGGGCAGTACGTGGTGGATCTGACTTCCTTCGAGCAGCTAGCG
CTTCCCGTCTTGAGGACTGCGGGTTCCAACAGCCCGGGGCAGAGAGTGTGTGTCATTGAT
GAAGTGGGGAAGATGGAGCTCTTCAGCCAGCCATTCATCCAGGCTGTCCGCCAGACCCTG
TCCACTCCGGGTACCGTCATCCTTGGCACCATCCCTGTACCCAAAGGAAAGCCGCTGGCT
CTCGTGGAAGAGATCAGAACAAGAAACGACGTTAAAGTGTTGAGTGTCACCAAGGACAAC
AGAAACCACCTTCTGCCAGAGATTGTGGCATGTGTGCAGAGCGGCAGGAAGTGAAGACGA
TGGTCCCAGCTTTTCTCAACACGAAGCCATTCCTGCGAGAGGAGCCTGAGGGCCCTGCCT
GTCAGGGTTTTATGCCTTCGGCTTTTATGAAACCTTGGAGGCTTTGCCAAGGAAAGCCCA
ACAGCTGTTTGCCATAAAATGTTTACAAGATCAAATTAGCCTTAATGCTGGATTGACTCT
ACAAGATTAACAATCCACCGTGGCTTATTTATGCGGAGAGCTCTCTGTTTATTTCTTCTT
GCAGTTGGGCGTATGATTTGGGTACATTATGAAATGAGAAATGATTTTCGGAGTATTAGA
TGGAATTTGCCCCCACTGAAGTTTATAAATGTGCTCGGGGAAGAGGGAGAAGAGAGTTCC
CTGCCTTCAGCTTTGCATGTCATGGAAATTAAACCCTCTCCAGGAGCAGCTGCAGTCTCA
TGCAGCTTAGCGTGGTAACAGTTATTTGACTTTAAAAAATTAGTATTTCAAAAAAAGCCA
TTTTAGGTCCCCCCCCACTCATCTCTTATTGTTTGTTTTGATTATGGCTTAATAAAAATA
AAAATAATGTGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGGGGCTGGGCTTCCGGCCGGCGGAGGTGGGGACCGCTGCTCTGGGGGGGTGGGGTG
GACCCTGGGTCGTGACCCGCACCCCTACGTGCTGTGCTAATTCTACCGCGGCTCCCACCC
GTGTCTTGACCCCTGCCCACCGGTATGGCTCGGCACGTGTTCCTGACTGGGCCCCCAGGA
GTTGGAAAAACAACATTGATCCAGAAAGCCAGTGAAGCTCTAAAATCCTCTGGTGTGCCT
GTCGATGGATTTTATACAGAAGAAGTCAGACAGGGAGGAAGAAGAATAGGATTCGATGTT
GTCACGTTATCTGGCATGCGGGGACCTCTGTCTCGGATTGGGTCCACGCCTCCACCTGGA
AAGCGTGAGTGCCGAGTGGGGCAGTACGTGGTGGATCTGACTTCCTTCGAGCAGCTAGCG
CTTCCCGTCTTGAGGACTGCGGGTTCCAACAGCCCGGGGCAGAGAGTGTGTGTCATTGAT
GAAGTGGGGAAGATGGAGCTCTTCAGCCAGCCATTCATCCAGGCTGTCCGCCAGACCCTG
TCCACTCCGGGTACCGTCATCCTTGGCACCATCCCTGTACCCAAAGGAAAGCCGCTGGCT
CTCGTGGAAGAGATCAGAACAAGAAACGACGTTAAAGTGTTGAGTGTCACCAAGGACAAC
AGAAACCACCTTCTGCCAGAGATTGTGGCATGTGTGCAGAGCGGCAGGAAGTGAAGACGA
TGGTCCCAGCTTTTCTCAACACGAAGCCATTCCTGCGAGAGGAGCCTGAGGGCCCTGCCT
GTCAGGGTTTTATGCCTTCGGCTTTTATGAAACCTTGGAGGCTTTGCCAAGGAAAGCCCA
ACAGCTGTTTGCCATAAAATGTTTACAAGATCAAATTAGCCTTAATGCTGGATTGACTCT
ACAAGATTAACAATCCACCGTGGCTTATTTATGCGGAGAGCTCTCTGTTTATTTCTTCTT
GCAGTTGGGCGTATGATTTGGGTACATTATGAAATGAGAAATGATTTTCGGAGTATTAGA
TGGAATTTGCCCCCACTGAAGTTTATAAATGTGCTCGGGGAAGAGGGAGAAGAGAGTTCC
CTGCCTTCAGCTTTGCATGTCATGGAAATTAAACCCTCTCCAGGAGCAGCTGCAGTCTCA
TGCAGCTTAGCGTGGTAACAGTTATTTGACTTTAAAAAATTAGTATTTCAAAAAAAGCCA
TTTTAGGTCCCCCCCCACTCATCTCTTATTGTTTGTTTTGATTATGGCTTAATAAAAATA
AAAATAATGTGCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56203724|emb|CAI22244.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203724|emb|CAI22244.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               183-302, + strand, RNAz p=0.526229

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-302, + strand, RNAz p=0.526229

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               143-436, gnl|bosTau2|chr6 (2112315-2112030)
               

               
               143-436, gnl|Hg17|chr1 (229398036-229398922)
               

               
               143-436, gnl|Mm7|chr8 (124323657-124325021)
               


               
               172-343, gnl|bosTau2|chr11 (63159445-63159616)
               

               
               172-343, gnl|Hg17|chr1 (229398031-229398202)
               

               
               172-343, gnl|Mm7|chr8 (124323665-124323836)
               


               
               646-1271, gnl|bosTau2|chr11 (63191288-63191924)
               

               
               646-1271, gnl|Hg17|chr1 (229420644-229421267)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-436, gnl|bosTau2|chr6 (2112315-2112030)
               

               
               143-436, gnl|Hg17|chr1 (229398036-229398922)
               

               
               143-436, gnl|Mm7|chr8 (124323657-124325021)
               


               
               172-343, gnl|bosTau2|chr11 (63159445-63159616)
               

               
               172-343, gnl|Hg17|chr1 (229398031-229398202)
               

               
               172-343, gnl|Mm7|chr8 (124323665-124323836)
               


               
               646-1271, gnl|bosTau2|chr11 (63191288-63191924)
               

               
               646-1271, gnl|Hg17|chr1 (229420644-229421267)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ssp (0.406559)
               

               
               cga (0.279096)
               

               
               cbr (0.255951)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.406559)
               

               
               cga (0.279096)
               

               
               cbr (0.255951)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	143-436, gnl\|bosTau2\|chr6 (2112315-2112030)
	143-436, gnl\|Hg17\|chr1 (229398036-229398922)
	143-436, gnl\|Mm7\|chr8 (124323657-124325021)

	172-343, gnl\|bosTau2\|chr11 (63159445-63159616)
	172-343, gnl\|Hg17\|chr1 (229398031-229398202)
	172-343, gnl\|Mm7\|chr8 (124323665-124323836)

	646-1271, gnl\|bosTau2\|chr11 (63191288-63191924)
	646-1271, gnl\|Hg17\|chr1 (229420644-229421267)

	ssp (0.406559)
	cga (0.279096)
	cbr (0.255951)
	fcc (0.197785)
	ldo (0.194005)
	nlu (0.191681)
	rec (0.17307)
	ste (0.135208)
	lyg (0.133103)
	ese (0.126502)
	bla (0.124347)
	jca (0.11396)