Ss1.1-Liv1-LVR010011H01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGGAGCAGGCGGAAGTAGGGGTGAGAAGCGGCTGCAGCGCCGAGCGGAGGAGGCAGG AACCCGATTGCGAGCAGGAGCTGGGTGGGCACCATGGCTGGAATCACCACCATCGAGGCG GTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCCGATGATGCAGAGGAGAGGGCCGAG CGCCTCCAGCGGGAAGTGGAGGGGGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTG GCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCTCAAGAGCGC CTGGCCACTGCCCTGCAAAAGCTGGAGGAAGCTGAGAAAGCTGCTGATGAGAGCGAGAGA GGTATGAAGGTCATTGAAAACCGAGCCTTAAAAGATGAGGAAAAAATGGAACTCCAGGAA ATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTG GCTCGTAAGTTGGTGATTATTGAGGGAGACTTGGAACGCACAGAGGAGCGAGCTGAGCTG GCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGACTGATGGACCAGAATCTGAAG TGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGAAGAGATA AAGATTCTCACTGACAAACTCAAGGAGGCAGAGACCCGGGCCGAGTTTGCCGAGAGATCG GTAGCCAAGCTGGAAAAGACAATTGATGACTTGGAAGATAAACTGAAATGCACCAAAGAG GAGCACCTCTGTACACAAAGGATGCTGGACCAGACTCTGCTCGACCTGAATGAGATGTAG AGCACCCCAGCCCCGCCCTGCCGCCGCTCCTTCCTCTCACCCCGACTCCGCCTGAGGCCA GCCTGCCCGAAGCTGACCTTTAAACTGAGGGCTGATCTTTAACTGGAAGGCTGCTTTCTC CTTTTGCCACCTCTCCCACTCCCACCCCTTTGCCCTTTTCACCAAACTGTCTCTGCCTCT CCTGAGAGATTTCAGGTGGGCCAGAGGCTGAGCTCCTTTGGGAACAACTTTTAAGGGAAT GTGAGCACAATGCAAAATGTCTTTAAAGCATGTTCGTGATGTACACATTTTGTAATTACC TTTTTTGTTGTTGATGTAGCAACCATTTGTAAAAAACATTCCAGGTAATTCCACAGTTTT GAAGCAGCAGTCTAATCCCTTTCTCACTTTTGGAAGGTAACTTTTCAGCTTAATGCATAT TGCCCTCTCCATAGAGGAAGGATAACAGTGTGTGGGCCTGCCTTACTGAGAGCCAAACAG CCCAGAGAAAGACTTCATTATGGGAAACCTGGTTGCTCTGTAAAAAGTACCTGCCATATC AGAAAGGTGATTCCAGGAGTTAGCCAAAAAAAAAAAAAAAAAAAAGTGCTGTTCAGGTTT TCAGCTTTACAGTATCTTTGGGCAACTTTTATGTTTTTCATCATAAGTGACCAAACAGAT TAAGATGAGACCTCTGTCTGAGACCAAATCCTCTACCCTGTTCCCAATGGCTCATAGAAT GGATCATGTGCCCCTTATGTTGAGGTGACCACTTATTATTTGCTCCCCTGCCTCCTAGAA AGAAAGAAAATTATGTTTGGCCACTGATTTAGCCATATGAAACTCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGGAGCAGGCGGAAGTAGGGGTGAGAAGCGGCTGCAGCGCCGAGCGGAGGAGGCAGG AACCCGATTGCGAGCAGGAGCTGGGTGGGCACCATGGCTGGAATCACCACCATCGAGGCG GTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCCGATGATGCAGAGGAGAGGGCCGAG CGCCTCCAGCGGGAAGTGGAGGGGGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTG GCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCTCAAGAGCGC CTGGCCACTGCCCTGCAAAAGCTGGAGGAAGCTGAGAAAGCTGCTGATGAGAGCGAGAGA GGTATGAAGGTCATTGAAAACCGAGCCTTAAAAGATGAGGAAAAAATGGAACTCCAGGAA ATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTG GCTCGTAAGTTGGTGATTATTGAGGGAGACTTGGAACGCACAGAGGAGCGAGCTGAGCTG GCAGAGTCCCGTTGCCGAGAGATGGATGAGCAGATCAGACTGATGGACCAGAATCTGAAG TGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGAAGAGATA AAGATTCTCACTGACAAACTCAAGGAGGCAGAGACCCGGGCCGAGTTTGCCGAGAGATCG GTAGCCAAGCTGGAAAAGACAATTGATGACTTGGAAGATAAACTGAAATGCACCAAAGAG GAGCACCTCTGTACACAAAGGATGCTGGACCAGACTCTGCTCGACCTGAATGAGATGTAG AGCACCCCAGCCCCGCCCTGCCGCCGCTCCTTCCTCTCACCCCGACTCCGCCTGAGGCCA GCCTGCCCGAAGCTGACCTTTAAACTGAGGGCTGATCTTTAACTGGAAGGCTGCTTTCTC CTTTTGCCACCTCTCCCACTCCCACCCCTTTGCCCTTTTCACCAAACTGTCTCTGCCTCT CCTGAGAGATTTCAGGTGGGCCAGAGGCTGAGCTCCTTTGGGAACAACTTTTAAGGGAAT GTGAGCACAATGCAAAATGTCTTTAAAGCATGTTCGTGATGTACACATTTTGTAATTACC TTTTTTGTTGTTGATGTAGCAACCATTTGTAAAAAACATTCCAGGTAATTCCACAGTTTT GAAGCAGCAGTCTAATCCCTTTCTCACTTTTGGAAGGTAACTTTTCAGCTTAATGCATAT TGCCCTCTCCATAGAGGAAGGATAACAGTGTGTGGGCCTGCCTTACTGAGAGCCAAACAG CCCAGAGAAAGACTTCATTATGGGAAACCTGGTTGCTCTGTAAAAAGTACCTGCCATATC AGAAAGGTGATTCCAGGAGTTAGCCAAAAAAAAAAAAAAAAAAAAGTGCTGTTCAGGTTT TCAGCTTTACAGTATCTTTGGGCAACTTTTATGTTTTTCATCATAAGTGACCAAACAGAT TAAGATGAGACCTCTGTCTGAGACCAAATCCTCTACCCTGTTCCCAATGGCTCATAGAAT GGATCATGTGCCCCTTATGTTGAGGTGACCACTTATTATTTGCTCCCCTGCCTCCTAGAA AGAAAGAAAATTATGTTTGGCCACTGATTTAGCCATATGAAACTCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 26-359, - strand, RNAz p=0.621636 | |
| 185-344, - strand, RNAz p=0.986296 | |
| 545-664, - strand, RNAz p=0.64564 | |
| 942-1059, - strand, RNAz p=0.593046 | |
| 1217-1336, - strand, RNAz p=0.658725 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 26-359, - strand, RNAz p=0.621636 | |
| 185-344, - strand, RNAz p=0.986296 | |
| 545-664, - strand, RNAz p=0.64564 | |
| 942-1059, - strand, RNAz p=0.593046 | |
| 1217-1336, - strand, RNAz p=0.658725 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 26-1668, gnl|bosTau2|chr21 (23811576-23809925) | |
| 26-1668, gnl|Hg17|chr16 (51246649-51248300) | |
| 26-1668, gnl|Mm7|chr14 (107719386-107721058) | |
| 223-359, gnl|bosTau2|chr10 (30898622-30898758) | |
| 223-359, gnl|canFam2|chr30 (30647026-30647180) | |
| 223-359, gnl|danRer3|chr18 (46365359-46365513) | |
| 223-359, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 223-359, gnl|echTel1|scaffold_288449 (565-719) | |
| 223-359, gnl|fr1|chrUn (201006527-201006678) | |
| 223-359, gnl|galGal2|chr10 (4961794-4961651) | |
| 223-359, gnl|hg17|chr15 (61136233-61136387) | |
| 223-359, gnl|Hg17|chr15 (61136234-61136370) | |
| 223-359, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 223-359, gnl|mm7|chr9 (67067603-67067450) | |
| 223-359, gnl|Mm7|chr9 (67067600-67067464) | |
| 223-359, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 223-359, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 223-359, gnl|panTro1|chr16 (61592303-61592457) | |
| 223-359, gnl|rheMac2|chr7 (41442060-41442214) | |
| 223-359, gnl|rn3|chr8 (71364024-71363870) | |
| 223-359, gnl|tetNig1|chr5 (2575381-2575243) | |
| 223-359, gnl|xenTro1|scaffold_62 (1109650-1109793) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-1668, gnl|bosTau2|chr21 (23811576-23809925) | |
| 26-1668, gnl|Hg17|chr16 (51246649-51248300) | |
| 26-1668, gnl|Mm7|chr14 (107719386-107721058) | |
| 223-359, gnl|bosTau2|chr10 (30898622-30898758) | |
| 223-359, gnl|canFam2|chr30 (30647026-30647180) | |
| 223-359, gnl|danRer3|chr18 (46365359-46365513) | |
| 223-359, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 223-359, gnl|echTel1|scaffold_288449 (565-719) | |
| 223-359, gnl|fr1|chrUn (201006527-201006678) | |
| 223-359, gnl|galGal2|chr10 (4961794-4961651) | |
| 223-359, gnl|hg17|chr15 (61136233-61136387) | |
| 223-359, gnl|Hg17|chr15 (61136234-61136370) | |
| 223-359, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 223-359, gnl|mm7|chr9 (67067603-67067450) | |
| 223-359, gnl|Mm7|chr9 (67067600-67067464) | |
| 223-359, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 223-359, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 223-359, gnl|panTro1|chr16 (61592303-61592457) | |
| 223-359, gnl|rheMac2|chr7 (41442060-41442214) | |
| 223-359, gnl|rn3|chr8 (71364024-71363870) | |
| 223-359, gnl|tetNig1|chr5 (2575381-2575243) | |
| 223-359, gnl|xenTro1|scaffold_62 (1109650-1109793) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| fty (0.703359) | |
| cty (0.62448) | |
| nlu (0.575043) | |
| csp (0.483559) | |
| cly (0.482567) | |
| spl (0.429553) | |
| fcc (0.39557) | |
| nep (0.36785) | |
| eru (0.360144) | |
| cbl (0.344392) | |
| cag (0.302389) | |
| jej (0.296765) | |
| ldo (0.291008) | |
| fce (0.271592) | |
| cov (0.264306) | |
| bla (0.248694) | |
| clu (0.239292) | |
| ece (0.229305) | |
| eje (0.197668) | |
| col (0.195008) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.703359) | |
| cty (0.62448) | |
| nlu (0.575043) | |
| csp (0.483559) | |
| cly (0.482567) | |
| spl (0.429553) | |
| fcc (0.39557) | |
| nep (0.36785) | |
| eru (0.360144) | |
| cbl (0.344392) | |
| cag (0.302389) | |
| jej (0.296765) | |
| ldo (0.291008) | |
| fce (0.271592) | |
| cov (0.264306) | |
| bla (0.248694) | |
| clu (0.239292) | |
| ece (0.229305) | |
| eje (0.197668) | |
| col (0.195008) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |