Non-Coding RNA Search

Ss1.1-Liv1-LVR010012A11.5

Sequence:


               
               ATCGCTGCCTGGAGACGGCGGGAGGTCTTTCGCCATGGCTGCTGGGCCGATCTCCGAGCG
GAATCAGGATGCCACTGTGTACGTGGGGGGCCTCGATGAGAAAGTTAGCGAACCACTGCT
GTGGGAACTGTTTCTCCAGGCAGGGCCAGTAGTCAACACCCACATGCCAAAGGATAGAGT
CACTGGTCAGCATCAAGGCTATGGTTTCGTGGAGTTCTTAAGTGAGGAAGATGCTGACTA
TGCCATTAAGATCATGAACATGATCAAACTCTATGGGAAGCCGATACGGGTGAACAAGGC
ATCAGCTCACAACAAAAACCTGGATGTGGGAGCCAACATTTTCATTGGAAACCTGGACCC
AGAAATTGATGAGAAGTTGCTTTATGATACTTTTAGCGCCTTTGGGGTCATCTTACAAAC
CCCCAAGATAATGCGGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTT
TGCTTCATTTGATGCTTCGGATGCAGCAATTGAGGCCATGAATGGGCAGTACCTCTGTAA
CCGCCCAATCACTGTGTCCTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCATGGCTC
AGCAGCTGAACGACTTCTGGCAGCACAGAACCCACTCTCCCAGGCTGACCGCCCTCATCA
GCTCTTTGCAGATGCCCCCCCTCCACCGTCTGCTCCAAATCCTGTGGTATCATCACTGGG
GTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCTGGCTCTTTCCCACCCCCAGTACCGCC
TCCTGGAGCCCTTCCACCTGGGATACCCCCAGCCATGCCCCCACCACCTATGCCTCCTGG
GGCTGGAGGACATGGCCCTCCATCAGCAGGAACCCCAGGGGCTGGACATCCTGCACATGG
ACACTCACATCCTCACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGAT
GCAGCTGGCCCACCATGGCCCTCATGGCTTAGGACACCCCCATGCTGGGCCCCCTGGCTC
TGGAGGGCAGCCACCACCTCGACCACCACCTGGAATGCCTCATCCTGGACCTCCTCCAAT
GGGCATGCCCCCTCGAGGGCCTCCATTTGGATCGCCCATGGGTCACCCTGGTCCTATGCC
ACCACATGGTATGCGCGGACCTCCCCCACTGATGCCCCCTCATGGATACACTGGCCCTCC
ACGACCTCCACCATATGGCTACCAGCGAGGACCCCTCCCTCCACCCAGACCCACTCCCCG
GCCTCCAGTTCCCCCTCGAGGCCCACTTCGAGGCCCTCTTCCTCAGTGATTTCTCACTGT
CTTTGCTCCTGTTATGTCCTCCCAATATCTTTTCACTTCCTTGGACCAATCAGAGTTGCT
GTAGCTCGCAGGGGCTAGGGCACTAATCCCTCTCAGGCCTTTTTTGTAAGTGTAATTTTT
TTTTCACAGGAGGTTTTTTTTCCCCCTCTATGTTGGTCCGAAGTGCTTTGCAAATGCACA
GAGAAAATAAAACTTAACTCCTTGTTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGCTGCCTGGAGACGGCGGGAGGTCTTTCGCCATGGCTGCTGGGCCGATCTCCGAGCG
GAATCAGGATGCCACTGTGTACGTGGGGGGCCTCGATGAGAAAGTTAGCGAACCACTGCT
GTGGGAACTGTTTCTCCAGGCAGGGCCAGTAGTCAACACCCACATGCCAAAGGATAGAGT
CACTGGTCAGCATCAAGGCTATGGTTTCGTGGAGTTCTTAAGTGAGGAAGATGCTGACTA
TGCCATTAAGATCATGAACATGATCAAACTCTATGGGAAGCCGATACGGGTGAACAAGGC
ATCAGCTCACAACAAAAACCTGGATGTGGGAGCCAACATTTTCATTGGAAACCTGGACCC
AGAAATTGATGAGAAGTTGCTTTATGATACTTTTAGCGCCTTTGGGGTCATCTTACAAAC
CCCCAAGATAATGCGGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTT
TGCTTCATTTGATGCTTCGGATGCAGCAATTGAGGCCATGAATGGGCAGTACCTCTGTAA
CCGCCCAATCACTGTGTCCTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCATGGCTC
AGCAGCTGAACGACTTCTGGCAGCACAGAACCCACTCTCCCAGGCTGACCGCCCTCATCA
GCTCTTTGCAGATGCCCCCCCTCCACCGTCTGCTCCAAATCCTGTGGTATCATCACTGGG
GTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCTGGCTCTTTCCCACCCCCAGTACCGCC
TCCTGGAGCCCTTCCACCTGGGATACCCCCAGCCATGCCCCCACCACCTATGCCTCCTGG
GGCTGGAGGACATGGCCCTCCATCAGCAGGAACCCCAGGGGCTGGACATCCTGCACATGG
ACACTCACATCCTCACCCATTCCCACCGGGTGGGATGCCCCATCCAGGGATGTCTCAGAT
GCAGCTGGCCCACCATGGCCCTCATGGCTTAGGACACCCCCATGCTGGGCCCCCTGGCTC
TGGAGGGCAGCCACCACCTCGACCACCACCTGGAATGCCTCATCCTGGACCTCCTCCAAT
GGGCATGCCCCCTCGAGGGCCTCCATTTGGATCGCCCATGGGTCACCCTGGTCCTATGCC
ACCACATGGTATGCGCGGACCTCCCCCACTGATGCCCCCTCATGGATACACTGGCCCTCC
ACGACCTCCACCATATGGCTACCAGCGAGGACCCCTCCCTCCACCCAGACCCACTCCCCG
GCCTCCAGTTCCCCCTCGAGGCCCACTTCGAGGCCCTCTTCCTCAGTGATTTCTCACTGT
CTTTGCTCCTGTTATGTCCTCCCAATATCTTTTCACTTCCTTGGACCAATCAGAGTTGCT
GTAGCTCGCAGGGGCTAGGGCACTAATCCCTCTCAGGCCTTTTTTGTAAGTGTAATTTTT
TTTTCACAGGAGGTTTTTTTTCCCCCTCTATGTTGGTCCGAAGTGCTTTGCAAATGCACA
GAGAAAATAAAACTTAACTCCTTGTTTAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6AYL5_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6AYL5_RAT

Predicted RNA structure(s): 6 entry(ies)

More info

Predicted RNA structure(s): 6 entry(ies)

Help | Less info


               
               160-316, - strand, RNAz p=0.763219
               

               
               165-1421, - strand, RNAz p=0.911291
               

               
               397-556, - strand, RNAz p=0.982107
               

               
               677-1189, - strand, RNAz p=0.987501
               

               
               685-1234, - strand, RNAz p=0.977594
               

               
               1315-1427, - strand, RNAz p=0.850738

Predicted RNA structure(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-316, - strand, RNAz p=0.763219
               

               
               165-1421, - strand, RNAz p=0.911291
               

               
               397-556, - strand, RNAz p=0.982107
               

               
               677-1189, - strand, RNAz p=0.987501
               

               
               685-1234, - strand, RNAz p=0.977594
               

               
               1315-1427, - strand, RNAz p=0.850738

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-1536, gnl|bosTau2|chr25 (15234171-15235701)
               

               
               1-1536, gnl|Hg17|chr14 (66735508-66737030)
               

               
               1-1536, gnl|Mm7|chr15 (74162095-74160545)
               


               
               11-1512, gnl|bosTau2|chr15 (13241608-13243116)
               

               
               11-1512, gnl|Hg17|chr14 (66735511-66737003)
               

               
               11-1512, gnl|Mm7|chr15 (74162084-74160574)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1536, gnl|bosTau2|chr25 (15234171-15235701)
               

               
               1-1536, gnl|Hg17|chr14 (66735508-66737030)
               

               
               1-1536, gnl|Mm7|chr15 (74162095-74160545)
               


               
               11-1512, gnl|bosTau2|chr15 (13241608-13243116)
               

               
               11-1512, gnl|Hg17|chr14 (66735511-66737003)
               

               
               11-1512, gnl|Mm7|chr15 (74162084-74160574)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eep (0.367692)
               

               
               ill (0.351185)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	160-316, - strand, RNAz p=0.763219
	165-1421, - strand, RNAz p=0.911291
	397-556, - strand, RNAz p=0.982107
	677-1189, - strand, RNAz p=0.987501
	685-1234, - strand, RNAz p=0.977594
	1315-1427, - strand, RNAz p=0.850738

	1-1536, gnl\|bosTau2\|chr25 (15234171-15235701)
	1-1536, gnl\|Hg17\|chr14 (66735508-66737030)
	1-1536, gnl\|Mm7\|chr15 (74162095-74160545)

	11-1512, gnl\|bosTau2\|chr15 (13241608-13243116)
	11-1512, gnl\|Hg17\|chr14 (66735511-66737003)
	11-1512, gnl\|Mm7\|chr15 (74162084-74160574)

	elu (0.385356)
	eep (0.367692)
	ill (0.351185)
	nep (0.183925)
	fty (0.17584)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)
	clu (0.119646)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)