Ss1.1-Liv1-LVR010012C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCGCGAGGCCGCGCTTCGGCTCGCGCGGGTGTTGAGCGCGCAGTTGTAGCTGCCTGG CGGCGGGAGAAGTAGCGCTTGAGCCAAAGGACGTGCTGCTGCACTCGCGTGGTCATGGAG GCGCCGCCGCCGCCGCCGCCCGCGACGACTCTGGCCTCTGGCCGGGGCCGAAAGCTACTG CTGCTGCCGCTGCTGCTGTTCCTGCTGCGGGCTGAAGCGCTGTGGGGCTTGGAGGCGGAG GAGAGGCCCCGAACCCGCGAGGAGGAGTGCCACTTCTACGCGGGTGGACAAGTGTACCCC GGGGAGGCATCCCGGCTTTCGGTCGCCGATCACTCCTTGCACCTCAGCAAAGCCAAGATT TCCAAGCCAGCACCTTATTGGGAAGGAACAGCTGTGATAAACGGAGAATTTAAGGAGCTC AAGTTAACTGACTATCGTGGAAAATACCTGGTTTTTTTCTTCTATCCACTTGATTTCACT TTTGTGTGTCCAACTGAAATTATCGCCTTTGGTGATAGAATTGAGGAATTCAGATCAATA AATACTGAAGTGGTAGCATGCTCTGTCGATTCACAGTTTACCCATCTGGCCTGGATTAAT ACCCCTCGAAGACAAGGAGGACTTGGTCCAATAAGGATTCCACTTCTTTCAGATTTGAAC CATCAGATCTCAAAGGACTATGGTGTATACCTGGAAGACTCAGGCCACACTCTTAGAGGT CTCTTCATTATCGATGACAAAGGAATCCTAAGACAGATTACTCTGAATGACCTCCCTGTG GGTAGATCTGTGGATGAGACACTACGTTTGGTTCAAGCATTCCAGTACACTGACAAACAT GGAGAAGTCTGTCCTGCTGGTTGGAAACCTGGTAGTGAAACTATAATCCCAGATCCAGCT GGAAAACTGAAGTATTTTGATAAACTGAACTGAAAAATACTTCCTCAGGTCAAGATGCTT GAAACTTTTCAATAAAGTTCACCGTTTTATGTGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCGCGAGGCCGCGCTTCGGCTCGCGCGGGTGTTGAGCGCGCAGTTGTAGCTGCCTGG CGGCGGGAGAAGTAGCGCTTGAGCCAAAGGACGTGCTGCTGCACTCGCGTGGTCATGGAG GCGCCGCCGCCGCCGCCGCCCGCGACGACTCTGGCCTCTGGCCGGGGCCGAAAGCTACTG CTGCTGCCGCTGCTGCTGTTCCTGCTGCGGGCTGAAGCGCTGTGGGGCTTGGAGGCGGAG GAGAGGCCCCGAACCCGCGAGGAGGAGTGCCACTTCTACGCGGGTGGACAAGTGTACCCC GGGGAGGCATCCCGGCTTTCGGTCGCCGATCACTCCTTGCACCTCAGCAAAGCCAAGATT TCCAAGCCAGCACCTTATTGGGAAGGAACAGCTGTGATAAACGGAGAATTTAAGGAGCTC AAGTTAACTGACTATCGTGGAAAATACCTGGTTTTTTTCTTCTATCCACTTGATTTCACT TTTGTGTGTCCAACTGAAATTATCGCCTTTGGTGATAGAATTGAGGAATTCAGATCAATA AATACTGAAGTGGTAGCATGCTCTGTCGATTCACAGTTTACCCATCTGGCCTGGATTAAT ACCCCTCGAAGACAAGGAGGACTTGGTCCAATAAGGATTCCACTTCTTTCAGATTTGAAC CATCAGATCTCAAAGGACTATGGTGTATACCTGGAAGACTCAGGCCACACTCTTAGAGGT CTCTTCATTATCGATGACAAAGGAATCCTAAGACAGATTACTCTGAATGACCTCCCTGTG GGTAGATCTGTGGATGAGACACTACGTTTGGTTCAAGCATTCCAGTACACTGACAAACAT GGAGAAGTCTGTCCTGCTGGTTGGAAACCTGGTAGTGAAACTATAATCCCAGATCCAGCT GGAAAACTGAAGTATTTTGATAAACTGAACTGAAAAATACTTCCTCAGGTCAAGATGCTT GAAACTTTTCAATAAAGTTCACCGTTTTATGTGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 230-356, + strand, RNAz p=0.823298 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 230-356, + strand, RNAz p=0.823298 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-356, gnl|bosTau2|chrX (37459712-37460073) | |
| 1-356, gnl|Hg17|chrX (23445231-23445583) | |
| 1-356, gnl|Mm7|chrX (150139585-150139221) | |
| 359-476, gnl|bosTau2|chrX (37463549-37463666) | |
| 359-476, gnl|Hg17|chrX (23449303-23449420) | |
| 359-476, gnl|Mm7|chrX (150136061-150135944) | |
| 477-594, gnl|bosTau2|chrX (37467197-37467314) | |
| 477-594, gnl|canFam2|chrX (19325234-19325390) | |
| 477-594, gnl|canFam2|chrX (19325376-19325256) | |
| 477-594, gnl|danRer3|chr5 (64728-64868) | |
| 477-594, gnl|dasNov1|scaffold_2835 (68695-68544) | |
| 477-594, gnl|dasNov1|scaffold_98867 (365-249) | |
| 477-594, gnl|echTel1|scaffold_288164 (39450-39558) | |
| 477-594, gnl|echTel1|scaffold_313039 (47129-46966) | |
| 477-594, gnl|fr1|chrUn (4786562-4786426) | |
| 477-594, gnl|galGal2|chr1 (111713881-111713720) | |
| 477-594, gnl|hg17|chr4 (44787642-44787768) | |
| 477-594, gnl|hg17|chrX (23452743-23452904) | |
| 477-594, gnl|Hg17|chrX (23452764-23452881) | |
| 477-594, gnl|loxAfr1|scaffold_54727 (12745-12593) | |
| 477-594, gnl|loxAfr1|scaffold_54727 (12601-12726) | |
| 477-594, gnl|mm7|chr5 (69100335-69100455) | |
| 477-594, gnl|mm7|chrX (150133602-150133442) | |
| 477-594, gnl|Mm7|chrX (150133578-150133461) | |
| 477-594, gnl|monDom2|scaffold_21 (14378954-14378846) | |
| 477-594, gnl|monDom2|scaffold_48 (8385052-8384892) | |
| 477-594, gnl|oryCun1|scaffold_208503 (10807-10963) | |
| 477-594, gnl|oryCun1|scaffold_214163 (123695-123572) | |
| 477-594, gnl|panTro1|chr3 (102175405-102175279) | |
| 477-594, gnl|panTro1|chrX (24284482-24284654) | |
| 477-594, gnl|rheMac2|chr5 (40102812-40102938) | |
| 477-594, gnl|rheMac2|chrX (21475810-21475976) | |
| 477-594, gnl|rn3|chr14 (40857531-40857412) | |
| 477-594, gnl|rn3|chrX (61560347-61560507) | |
| 477-594, gnl|tetNig1|chr7 (4201276-4201400) | |
| 477-594, gnl|xenTro1|scaffold_32 (752700-752544) | |
| 715-847, gnl|bosTau2|chrX (37469939-37470071) | |
| 715-847, gnl|canFam2|chrX (19330334-19330482) | |
| 715-847, gnl|canFam2|chrX (19330490-19330346) | |
| 715-847, gnl|danRer3|chr11 (12428936-12428796) | |
| 715-847, gnl|danRer3|chr5 (71740-71888) | |
| 715-847, gnl|dasNov1|scaffold_13200 (14701-14555) | |
| 715-847, gnl|dasNov1|scaffold_98867 (620-459) | |
| 715-847, gnl|echTel1|scaffold_288164 (39210-39351) | |
| 715-847, gnl|echTel1|scaffold_313039 (43243-43097) | |
| 715-847, gnl|fr1|chrUn (4786112-4785962) | |
| 715-847, gnl|fr1|chrUn (4785965-4786102) | |
| 715-847, gnl|galGal2|chr1 (111712114-111711966) | |
| 715-847, gnl|hg17|chr4 (44787391-44787555) | |
| 715-847, gnl|hg17|chrX (23460157-23460305) | |
| 715-847, gnl|Hg17|chrX (23460168-23460300) | |
| 715-847, gnl|loxAfr1|scaffold_54727 (9069-8923) | |
| 715-847, gnl|loxAfr1|scaffold_54727 (8926-9059) | |
| 715-847, gnl|mm7|chr5 (69100059-69100194) | |
| 715-847, gnl|mm7|chrX (150129697-150129549) | |
| 715-847, gnl|Mm7|chrX (150129684-150129552) | |
| 715-847, gnl|monDom2|scaffold_21 (14379190-14379037) | |
| 715-847, gnl|monDom2|scaffold_48 (8380811-8380664) | |
| 715-847, gnl|oryCun1|scaffold_208503 (16939-17087) | |
| 715-847, gnl|oryCun1|scaffold_214163 (123960-123800) | |
| 715-847, gnl|panTro1|chr3 (102175656-102175492) | |
| 715-847, gnl|panTro1|chrX (24291897-24292045) | |
| 715-847, gnl|rheMac2|chr5 (40102561-40102725) | |
| 715-847, gnl|rheMac2|chrX (21482904-21483050) | |
| 715-847, gnl|rn3|chr14 (40857898-40857737) | |
| 715-847, gnl|rn3|chrX (61563443-61563591) | |
| 715-847, gnl|tetNig1|chr7 (4201769-4201921) | |
| 715-847, gnl|tetNig1|chr7 (4201918-4201792) | |
| 715-847, gnl|xenTro1|scaffold_32 (751178-751032) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-356, gnl|bosTau2|chrX (37459712-37460073) | |
| 1-356, gnl|Hg17|chrX (23445231-23445583) | |
| 1-356, gnl|Mm7|chrX (150139585-150139221) | |
| 359-476, gnl|bosTau2|chrX (37463549-37463666) | |
| 359-476, gnl|Hg17|chrX (23449303-23449420) | |
| 359-476, gnl|Mm7|chrX (150136061-150135944) | |
| 477-594, gnl|bosTau2|chrX (37467197-37467314) | |
| 477-594, gnl|canFam2|chrX (19325234-19325390) | |
| 477-594, gnl|canFam2|chrX (19325376-19325256) | |
| 477-594, gnl|danRer3|chr5 (64728-64868) | |
| 477-594, gnl|dasNov1|scaffold_2835 (68695-68544) | |
| 477-594, gnl|dasNov1|scaffold_98867 (365-249) | |
| 477-594, gnl|echTel1|scaffold_288164 (39450-39558) | |
| 477-594, gnl|echTel1|scaffold_313039 (47129-46966) | |
| 477-594, gnl|fr1|chrUn (4786562-4786426) | |
| 477-594, gnl|galGal2|chr1 (111713881-111713720) | |
| 477-594, gnl|hg17|chr4 (44787642-44787768) | |
| 477-594, gnl|hg17|chrX (23452743-23452904) | |
| 477-594, gnl|Hg17|chrX (23452764-23452881) | |
| 477-594, gnl|loxAfr1|scaffold_54727 (12745-12593) | |
| 477-594, gnl|loxAfr1|scaffold_54727 (12601-12726) | |
| 477-594, gnl|mm7|chr5 (69100335-69100455) | |
| 477-594, gnl|mm7|chrX (150133602-150133442) | |
| 477-594, gnl|Mm7|chrX (150133578-150133461) | |
| 477-594, gnl|monDom2|scaffold_21 (14378954-14378846) | |
| 477-594, gnl|monDom2|scaffold_48 (8385052-8384892) | |
| 477-594, gnl|oryCun1|scaffold_208503 (10807-10963) | |
| 477-594, gnl|oryCun1|scaffold_214163 (123695-123572) | |
| 477-594, gnl|panTro1|chr3 (102175405-102175279) | |
| 477-594, gnl|panTro1|chrX (24284482-24284654) | |
| 477-594, gnl|rheMac2|chr5 (40102812-40102938) | |
| 477-594, gnl|rheMac2|chrX (21475810-21475976) | |
| 477-594, gnl|rn3|chr14 (40857531-40857412) | |
| 477-594, gnl|rn3|chrX (61560347-61560507) | |
| 477-594, gnl|tetNig1|chr7 (4201276-4201400) | |
| 477-594, gnl|xenTro1|scaffold_32 (752700-752544) | |
| 715-847, gnl|bosTau2|chrX (37469939-37470071) | |
| 715-847, gnl|canFam2|chrX (19330334-19330482) | |
| 715-847, gnl|canFam2|chrX (19330490-19330346) | |
| 715-847, gnl|danRer3|chr11 (12428936-12428796) | |
| 715-847, gnl|danRer3|chr5 (71740-71888) | |
| 715-847, gnl|dasNov1|scaffold_13200 (14701-14555) | |
| 715-847, gnl|dasNov1|scaffold_98867 (620-459) | |
| 715-847, gnl|echTel1|scaffold_288164 (39210-39351) | |
| 715-847, gnl|echTel1|scaffold_313039 (43243-43097) | |
| 715-847, gnl|fr1|chrUn (4786112-4785962) | |
| 715-847, gnl|fr1|chrUn (4785965-4786102) | |
| 715-847, gnl|galGal2|chr1 (111712114-111711966) | |
| 715-847, gnl|hg17|chr4 (44787391-44787555) | |
| 715-847, gnl|hg17|chrX (23460157-23460305) | |
| 715-847, gnl|Hg17|chrX (23460168-23460300) | |
| 715-847, gnl|loxAfr1|scaffold_54727 (9069-8923) | |
| 715-847, gnl|loxAfr1|scaffold_54727 (8926-9059) | |
| 715-847, gnl|mm7|chr5 (69100059-69100194) | |
| 715-847, gnl|mm7|chrX (150129697-150129549) | |
| 715-847, gnl|Mm7|chrX (150129684-150129552) | |
| 715-847, gnl|monDom2|scaffold_21 (14379190-14379037) | |
| 715-847, gnl|monDom2|scaffold_48 (8380811-8380664) | |
| 715-847, gnl|oryCun1|scaffold_208503 (16939-17087) | |
| 715-847, gnl|oryCun1|scaffold_214163 (123960-123800) | |
| 715-847, gnl|panTro1|chr3 (102175656-102175492) | |
| 715-847, gnl|panTro1|chrX (24291897-24292045) | |
| 715-847, gnl|rheMac2|chr5 (40102561-40102725) | |
| 715-847, gnl|rheMac2|chrX (21482904-21483050) | |
| 715-847, gnl|rn3|chr14 (40857898-40857737) | |
| 715-847, gnl|rn3|chrX (61563443-61563591) | |
| 715-847, gnl|tetNig1|chr7 (4201769-4201921) | |
| 715-847, gnl|tetNig1|chr7 (4201918-4201792) | |
| 715-847, gnl|xenTro1|scaffold_32 (751178-751032) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| amn (0.835422) | |
| eje (0.593003) | |
| pan (0.471921) | |
| lun (0.451467) | |
| lin (0.436808) | |
| tes (0.415628) | |
| ova (0.387397) | |
| nep (0.36785) | |
| ill (0.351185) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| tra (0.246184) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| med (0.232504) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| eje (0.593003) | |
| pan (0.471921) | |
| lun (0.451467) | |
| lin (0.436808) | |
| tes (0.415628) | |
| ova (0.387397) | |
| nep (0.36785) | |
| ill (0.351185) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| tra (0.246184) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| med (0.232504) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |