Ss1.1-Liv1-LVR010012H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTAAGGCAAGCTTGTGGGCAGTGGGCTGGGGCTGAGCTGCTCTGGGGACCTCTGGAAA AGAAGGCCATGCAGGTGGATGCTGGGATGGAAGCCTCTCTGACCAAGTGTGCTCGGGGGA AGCCCTTCCACATAGTCACACCTCTGCTGGAGAGCTGGCCACTGTCCCAGATGGCAGGCA CACCTGTCCTCCTCAAGTATGAGAATGTGCAGCCCACAGGCTCCTTCAAGATCCGTGGCA TCGGGCATTTCTGCCAGGAGATGGTCAAAAGAGGATACAGACATTTCGTGTGCCCTTCAG GGAGCAACGCGGGCATTGCTACTGCTTATGCGGCCAGGAACCTGGGCATCCCAGCCACCA TTGTGCTCCCTGAGAGCACCTCTCTGCAGGTGGTGAGGAGGCTGCAGGGGGAGGGGGCTG AGGTTCAGCTGACTGGAAAGGTCTGGGATGAGGCCAATCTGAGAGCACAAGAGTTGGCCA AGAATGATGGCTGGGTGAATGTCCCCCCATTTGACCACCCCCTGATATGGGAAGGCCACA GTAGCTTGGTGCACGAGCTGAAGGCAGAGCTGCGGACCCCACCAGGTGCCCTGGTGCTGG CAGTGGGGGGTGGAGGTCTCCTGGCTGGGGTGTCGGCCGGTCTGGCAGAGGTGGGCTGGC AGCATGTGCCCATTATCGCCATGGAGACTCAAGGGGCACACTGTTTCAACGCAGCCGTCA AGGCAGGCAGGCTGGTGACACTGCCAGATATCACCAGTGTGGCCAAGTGCCTAGGTGCCA AGACGGTGGCTGCGCGGGCCCTGGCGTGTACAAAGGAGTTTGAGATCTTCTCTGAGGTGG TGGAGGATGTTGAGGCTGTGAGTGCTGTGCAGCGGTTCCTGGATGACCAGCGAATGTTGG TGGAGCCTGCCTGTGGGGCAGCCTTAGCTGCCATCTACTCAGGCCTCCTGGGGAGGCTCC AGGCTGAGGGCCGCCTGCGCCCTTCCCTGGATTCAGTCGTGGTCATTGTGTGCGGAGGCA ACAACATCGACAGTGGAGAGTTGCAGGCTCTGAGAGCCCAGCTGGGCCAGGGCTGACGGA TCCTGGATTGGGAGGGATGGCTGGGTTCCAGCGATTCACCAAGAGGCTCCTGAACACTCC AGGGCTGAGGTGCCTCTGTGCTCATGGATGACAGTGGAAACTGCCCTGTGCTGCTGTACT GGCTGCCTCCTGCAGGAAGCCCTCCTGAACTGCTCCCCGTGGCTTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTAAGGCAAGCTTGTGGGCAGTGGGCTGGGGCTGAGCTGCTCTGGGGACCTCTGGAAA AGAAGGCCATGCAGGTGGATGCTGGGATGGAAGCCTCTCTGACCAAGTGTGCTCGGGGGA AGCCCTTCCACATAGTCACACCTCTGCTGGAGAGCTGGCCACTGTCCCAGATGGCAGGCA CACCTGTCCTCCTCAAGTATGAGAATGTGCAGCCCACAGGCTCCTTCAAGATCCGTGGCA TCGGGCATTTCTGCCAGGAGATGGTCAAAAGAGGATACAGACATTTCGTGTGCCCTTCAG GGAGCAACGCGGGCATTGCTACTGCTTATGCGGCCAGGAACCTGGGCATCCCAGCCACCA TTGTGCTCCCTGAGAGCACCTCTCTGCAGGTGGTGAGGAGGCTGCAGGGGGAGGGGGCTG AGGTTCAGCTGACTGGAAAGGTCTGGGATGAGGCCAATCTGAGAGCACAAGAGTTGGCCA AGAATGATGGCTGGGTGAATGTCCCCCCATTTGACCACCCCCTGATATGGGAAGGCCACA GTAGCTTGGTGCACGAGCTGAAGGCAGAGCTGCGGACCCCACCAGGTGCCCTGGTGCTGG CAGTGGGGGGTGGAGGTCTCCTGGCTGGGGTGTCGGCCGGTCTGGCAGAGGTGGGCTGGC AGCATGTGCCCATTATCGCCATGGAGACTCAAGGGGCACACTGTTTCAACGCAGCCGTCA AGGCAGGCAGGCTGGTGACACTGCCAGATATCACCAGTGTGGCCAAGTGCCTAGGTGCCA AGACGGTGGCTGCGCGGGCCCTGGCGTGTACAAAGGAGTTTGAGATCTTCTCTGAGGTGG TGGAGGATGTTGAGGCTGTGAGTGCTGTGCAGCGGTTCCTGGATGACCAGCGAATGTTGG TGGAGCCTGCCTGTGGGGCAGCCTTAGCTGCCATCTACTCAGGCCTCCTGGGGAGGCTCC AGGCTGAGGGCCGCCTGCGCCCTTCCCTGGATTCAGTCGTGGTCATTGTGTGCGGAGGCA ACAACATCGACAGTGGAGAGTTGCAGGCTCTGAGAGCCCAGCTGGGCCAGGGCTGACGGA TCCTGGATTGGGAGGGATGGCTGGGTTCCAGCGATTCACCAAGAGGCTCCTGAACACTCC AGGGCTGAGGTGCCTCTGTGCTCATGGATGACAGTGGAAACTGCCCTGTGCTGCTGTACT GGCTGCCTCCTGCAGGAAGCCCTCCTGAACTGCTCCCCGTGGCTTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1121-1234, - strand, RNAz p=0.635331 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1121-1234, - strand, RNAz p=0.635331 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 24-263, gnl|bosTau2|chr17 (38058241-38058482) | |
| 24-263, gnl|Hg17|chr12 (112328444-112328684) | |
| 24-263, gnl|Mm7|chr5 (119697245-119697015) | |
| 298-442, gnl|bosTau2|chr17 (38059501-38059645) | |
| 298-442, gnl|canFam2|chr26 (13773089-13773273) | |
| 298-442, gnl|danRer3|chr12 (11734264-11734451) | |
| 298-442, gnl|echTel1|scaffold_291892 (40630-40448) | |
| 298-442, gnl|fr1|chrUn (307052085-307051940) | |
| 298-442, gnl|galGal2|chr15 (12364284-12364109) | |
| 298-442, gnl|hg17|chr12 (112329654-112329837) | |
| 298-442, gnl|Hg17|chr12 (112329682-112329826) | |
| 298-442, gnl|loxAfr1|scaffold_43222 (4958-5141) | |
| 298-442, gnl|mm7|chr5 (119696123-119695935) | |
| 298-442, gnl|Mm7|chr5 (119696105-119695961) | |
| 298-442, gnl|monDom2|scaffold_110 (1800805-1800990) | |
| 298-442, gnl|panTro1|chr10 (115036735-115036918) | |
| 298-442, gnl|rheMac2|chr11 (114349380-114349563) | |
| 298-442, gnl|rn3|chr12 (37167047-37167235) | |
| 298-442, gnl|tetNig1|chr10 (774466-774304) | |
| 298-442, gnl|xenTro1|scaffold_891 (159324-159488) | |
| 529-757, gnl|bosTau2|chr17 (38062042-38062270) | |
| 529-757, gnl|canFam2|chr26 (13776070-13776225) | |
| 529-757, gnl|danRer3|chr12 (11736221-11736375) | |
| 529-757, gnl|echTel1|scaffold_213733 (3475-3321) | |
| 529-757, gnl|fr1|chrUn (307051688-307051527) | |
| 529-757, gnl|galGal2|chr15 (12363761-12363606) | |
| 529-757, gnl|hg17|chr12 (112335848-112336003) | |
| 529-757, gnl|Hg17|chr12 (112335853-112336081) | |
| 529-757, gnl|loxAfr1|scaffold_25670 (18092-18247) | |
| 529-757, gnl|mm7|chr5 (119693977-119693822) | |
| 529-757, gnl|Mm7|chr5 (119693970-119693742) | |
| 529-757, gnl|monDom2|scaffold_110 (1804311-1804466) | |
| 529-757, gnl|oryCun1|scaffold_193401 (16663-16508) | |
| 529-757, gnl|panTro1|chr10 (115042949-115043104) | |
| 529-757, gnl|rheMac2|chr11 (114357214-114357369) | |
| 529-757, gnl|rn3|chr12 (37169234-37169389) | |
| 529-757, gnl|tetNig1|chr10 (774064-773903) | |
| 529-757, gnl|xenTro1|scaffold_891 (164521-164679) | |
| 882-1248, gnl|bosTau2|chr17 (38065390-38065760) | |
| 882-1248, gnl|Hg17|chr12 (112338410-112338767) | |
| 882-1248, gnl|Mm7|chr5 (119692538-119692220) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-263, gnl|bosTau2|chr17 (38058241-38058482) | |
| 24-263, gnl|Hg17|chr12 (112328444-112328684) | |
| 24-263, gnl|Mm7|chr5 (119697245-119697015) | |
| 298-442, gnl|bosTau2|chr17 (38059501-38059645) | |
| 298-442, gnl|canFam2|chr26 (13773089-13773273) | |
| 298-442, gnl|danRer3|chr12 (11734264-11734451) | |
| 298-442, gnl|echTel1|scaffold_291892 (40630-40448) | |
| 298-442, gnl|fr1|chrUn (307052085-307051940) | |
| 298-442, gnl|galGal2|chr15 (12364284-12364109) | |
| 298-442, gnl|hg17|chr12 (112329654-112329837) | |
| 298-442, gnl|Hg17|chr12 (112329682-112329826) | |
| 298-442, gnl|loxAfr1|scaffold_43222 (4958-5141) | |
| 298-442, gnl|mm7|chr5 (119696123-119695935) | |
| 298-442, gnl|Mm7|chr5 (119696105-119695961) | |
| 298-442, gnl|monDom2|scaffold_110 (1800805-1800990) | |
| 298-442, gnl|panTro1|chr10 (115036735-115036918) | |
| 298-442, gnl|rheMac2|chr11 (114349380-114349563) | |
| 298-442, gnl|rn3|chr12 (37167047-37167235) | |
| 298-442, gnl|tetNig1|chr10 (774466-774304) | |
| 298-442, gnl|xenTro1|scaffold_891 (159324-159488) | |
| 529-757, gnl|bosTau2|chr17 (38062042-38062270) | |
| 529-757, gnl|canFam2|chr26 (13776070-13776225) | |
| 529-757, gnl|danRer3|chr12 (11736221-11736375) | |
| 529-757, gnl|echTel1|scaffold_213733 (3475-3321) | |
| 529-757, gnl|fr1|chrUn (307051688-307051527) | |
| 529-757, gnl|galGal2|chr15 (12363761-12363606) | |
| 529-757, gnl|hg17|chr12 (112335848-112336003) | |
| 529-757, gnl|Hg17|chr12 (112335853-112336081) | |
| 529-757, gnl|loxAfr1|scaffold_25670 (18092-18247) | |
| 529-757, gnl|mm7|chr5 (119693977-119693822) | |
| 529-757, gnl|Mm7|chr5 (119693970-119693742) | |
| 529-757, gnl|monDom2|scaffold_110 (1804311-1804466) | |
| 529-757, gnl|oryCun1|scaffold_193401 (16663-16508) | |
| 529-757, gnl|panTro1|chr10 (115042949-115043104) | |
| 529-757, gnl|rheMac2|chr11 (114357214-114357369) | |
| 529-757, gnl|rn3|chr12 (37169234-37169389) | |
| 529-757, gnl|tetNig1|chr10 (774064-773903) | |
| 529-757, gnl|xenTro1|scaffold_891 (164521-164679) | |
| 882-1248, gnl|bosTau2|chr17 (38065390-38065760) | |
| 882-1248, gnl|Hg17|chr12 (112338410-112338767) | |
| 882-1248, gnl|Mm7|chr5 (119692538-119692220) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nje (0.33184) | |
| jej (0.197844) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| jej (0.197844) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| eje (0.0988338) |