Ss1.1-Liv1-LVR010012H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCATGGCCGCGGCCGCGCCGCTGCGTGACTGCCAGGCATGGAAGGATACCGGGCTCCC GCTCTCCACCACAAGCAATGAGGCCTGTAAGCTGTTTGATGCCACCCTGACTCAGTACGT CAAATGGACCAACGACCAGAGTCTCGGTGGCATTGAGGGCTGCCTGTCAAAGCTCAAAGC AGCCGATCCGACCTTTGCCATGGGCCACGCCATCGCCAACGGCCTCGTGCTGATTGGCAC CGGGAACTCTGTGAGGCTGGACAGAGAGCTGGACCTGGCCGTGGCGAAGATGGTGGAAAT CTCCAAAACTCAGCCGCTGACCCAGCGGGAGCAGCTGCACGTGGCTGCGGTAGAGACCTT TGCCAAGGGGAACTTCCCCAAAGCCTGTGACCTATGGGAACAGATTCTCCAGGACCACCC CACAGACATGTTGGCCCTGAAGTTCTCCCATGATGCTTATTTCTACCTGGGCTACCAGGA ACAGATGCGAGATTCTGTGGCTCGAGTCTATCCCTTCTGGACACCTGACATCCCCCTGAG CAGCTATGTGAAAGGCATATATTCTTTTGGACTGATGGAAACCAACTTCTATGATAGGGC GGAAAAGCTGGCCAAGGAGGCTCTATCTATTGACCCAACGGACGCGTGGTCAGTACACAC CATCGCCCACATTCACGAGATGAAAGCGGAGGTCCAGGATGGGCTGGAGTTCATGCAGCG CTCAGAAACCCACTGGAAGGAGTCCGACATGCTCGCTTGTCATAATTATTGGCACTGGGC TTTATATCTGATTGAAAAGGGCGAACCCGAGGCGGCGCTGACGATGTACGATGATCACAT CCTTCCCAGCCTGCGGGCCAGCGGGGCGATGCTGGATGTGGTGGACAGCTGCTCCATGCT GTACCGGCTGCAGATGGAAGGGGTGTCTGTGGGTGAGCGGTGGCAGGACGTCCTGGCCGT GACCCGGAAGCACAGCCGAGACCACATCCTGCTCTTCAATGACGCCCACTTCTTGATGGC GTCGCTGGGCGCCCGTGACCCCCAGACCACGCAGGAGCTGCTCACCACCCTGCAGGACGC CAGCGAGTCCCCGGGGGAGAACTGTCAGCACCTGCTGGCCCGCGACGTGGGACTGCCCTT GTGCCAGGCCCTGGTGGAGGCGCAGAATGGGAACCCCGACCGCGTGGTTGAGCTGCTCCT GCCCATCCGCTACCGGCTCGTCCAGATTGGAGGCAGCAATGCCCAGAGAGATGTCTTCAA CCAATTACTGATTCACGCGGCCTTGAACTGCTCGTCTGGCGTCCACAAGAACGTGGCCCG GAGCCTTCTGATGGAGCGAGACGCCTTGAAGCCCAACTCACCCCTGACGGCGAGGCTCAT CCGGAAGGCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCATGGCCGCGGCCGCGCCGCTGCGTGACTGCCAGGCATGGAAGGATACCGGGCTCCC GCTCTCCACCACAAGCAATGAGGCCTGTAAGCTGTTTGATGCCACCCTGACTCAGTACGT CAAATGGACCAACGACCAGAGTCTCGGTGGCATTGAGGGCTGCCTGTCAAAGCTCAAAGC AGCCGATCCGACCTTTGCCATGGGCCACGCCATCGCCAACGGCCTCGTGCTGATTGGCAC CGGGAACTCTGTGAGGCTGGACAGAGAGCTGGACCTGGCCGTGGCGAAGATGGTGGAAAT CTCCAAAACTCAGCCGCTGACCCAGCGGGAGCAGCTGCACGTGGCTGCGGTAGAGACCTT TGCCAAGGGGAACTTCCCCAAAGCCTGTGACCTATGGGAACAGATTCTCCAGGACCACCC CACAGACATGTTGGCCCTGAAGTTCTCCCATGATGCTTATTTCTACCTGGGCTACCAGGA ACAGATGCGAGATTCTGTGGCTCGAGTCTATCCCTTCTGGACACCTGACATCCCCCTGAG CAGCTATGTGAAAGGCATATATTCTTTTGGACTGATGGAAACCAACTTCTATGATAGGGC GGAAAAGCTGGCCAAGGAGGCTCTATCTATTGACCCAACGGACGCGTGGTCAGTACACAC CATCGCCCACATTCACGAGATGAAAGCGGAGGTCCAGGATGGGCTGGAGTTCATGCAGCG CTCAGAAACCCACTGGAAGGAGTCCGACATGCTCGCTTGTCATAATTATTGGCACTGGGC TTTATATCTGATTGAAAAGGGCGAACCCGAGGCGGCGCTGACGATGTACGATGATCACAT CCTTCCCAGCCTGCGGGCCAGCGGGGCGATGCTGGATGTGGTGGACAGCTGCTCCATGCT GTACCGGCTGCAGATGGAAGGGGTGTCTGTGGGTGAGCGGTGGCAGGACGTCCTGGCCGT GACCCGGAAGCACAGCCGAGACCACATCCTGCTCTTCAATGACGCCCACTTCTTGATGGC GTCGCTGGGCGCCCGTGACCCCCAGACCACGCAGGAGCTGCTCACCACCCTGCAGGACGC CAGCGAGTCCCCGGGGGAGAACTGTCAGCACCTGCTGGCCCGCGACGTGGGACTGCCCTT GTGCCAGGCCCTGGTGGAGGCGCAGAATGGGAACCCCGACCGCGTGGTTGAGCTGCTCCT GCCCATCCGCTACCGGCTCGTCCAGATTGGAGGCAGCAATGCCCAGAGAGATGTCTTCAA CCAATTACTGATTCACGCGGCCTTGAACTGCTCGTCTGGCGTCCACAAGAACGTGGCCCG GAGCCTTCTGATGGAGCGAGACGCCTTGAAGCCCAACTCACCCCTGACGGCGAGGCTCAT CCGGAAGGCGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 369-487, - strand, RNAz p=0.572237 | |
| 369-459, - strand, RNAz p=0.640779 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 369-487, - strand, RNAz p=0.572237 | |
| 369-459, - strand, RNAz p=0.640779 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 369-550, gnl|bosTau2|chr5 (73931076-73930895) | |
| 369-550, gnl|canFam2|chr10 (22958597-22958391) | |
| 369-550, gnl|danRer3|chr18 (9693163-9692976) | |
| 369-550, gnl|dasNov1|scaffold_200133 (613-822) | |
| 369-550, gnl|fr1|chrUn (76903307-76903096) | |
| 369-550, gnl|galGal2|chrUn (161580364-161580563) | |
| 369-550, gnl|hg17|chr22 (44991638-44991846) | |
| 369-550, gnl|Hg17|chr22 (44991663-44991844) | |
| 369-550, gnl|loxAfr1|scaffold_159079 (4132-4340) | |
| 369-550, gnl|mm7|chr15 (85921061-85921253) | |
| 369-550, gnl|Mm7|chr15 (85921070-85921251) | |
| 369-550, gnl|monDom2|scaffold_107 (1308654-1308850) | |
| 369-550, gnl|oryCun1|scaffold_189141 (24800-24593) | |
| 369-550, gnl|panTro1|chr23 (45305557-45305765) | |
| 369-550, gnl|rheMac2|chr10 (90290380-90290588) | |
| 369-550, gnl|rn3|chr7 (123877453-123877650) | |
| 369-550, gnl|tetNig1|chr13 (2017412-2017234) | |
| 369-550, gnl|xenTro1|scaffold_1162 (85887-85697) | |
| 618-740, gnl|bosTau2|chr5 (73926221-73926099) | |
| 618-740, gnl|canFam2|chr10 (22953791-22953665) | |
| 618-740, gnl|danRer3|chr18 (9689961-9689836) | |
| 618-740, gnl|echTel1|scaffold_306786 (3207-3334) | |
| 618-740, gnl|fr1|chrUn (76902614-76902488) | |
| 618-740, gnl|galGal2|chrUn (161584081-161584207) | |
| 618-740, gnl|hg17|chr22 (44998012-44998138) | |
| 618-740, gnl|Hg17|chr22 (44998013-44998135) | |
| 618-740, gnl|loxAfr1|scaffold_37184 (21220-21346) | |
| 618-740, gnl|mm7|chr15 (85926814-85926940) | |
| 618-740, gnl|Mm7|chr15 (85926815-85926937) | |
| 618-740, gnl|monDom2|scaffold_107 (1313807-1313933) | |
| 618-740, gnl|oryCun1|scaffold_189141 (18638-18512) | |
| 618-740, gnl|panTro1|chr23 (45311928-45312054) | |
| 618-740, gnl|rheMac2|chr10 (90296518-90296644) | |
| 618-740, gnl|rn3|chr7 (123882229-123882355) | |
| 618-740, gnl|tetNig1|chr13 (2017044-2016918) | |
| 618-740, gnl|xenTro1|scaffold_1162 (84382-84257) | |
| 1079-1246, gnl|bosTau2|chr5 (73918121-73917954) | |
| 1079-1246, gnl|canFam2|chr10 (22945702-22945569) | |
| 1079-1246, gnl|danRer3|chr18 (9668371-9668236) | |
| 1079-1246, gnl|fr1|chrUn (76900236-76900125) | |
| 1079-1246, gnl|galGal2|chrUn (161590804-161590916) | |
| 1079-1246, gnl|hg17|chr22 (45005791-45005924) | |
| 1079-1246, gnl|Hg17|chr22 (45005810-45005977) | |
| 1079-1246, gnl|mm7|chr15 (85935917-85936055) | |
| 1079-1246, gnl|Mm7|chr15 (85935944-85936109) | |
| 1079-1246, gnl|oryCun1|scaffold_189141 (11588-11457) | |
| 1079-1246, gnl|panTro1|chr23 (45319705-45319838) | |
| 1079-1246, gnl|rheMac2|chr10 (90304267-90304400) | |
| 1079-1246, gnl|rn3|chr7 (123890102-123890227) | |
| 1079-1246, gnl|tetNig1|chr13 (2015131-2015020) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 369-550, gnl|bosTau2|chr5 (73931076-73930895) | |
| 369-550, gnl|canFam2|chr10 (22958597-22958391) | |
| 369-550, gnl|danRer3|chr18 (9693163-9692976) | |
| 369-550, gnl|dasNov1|scaffold_200133 (613-822) | |
| 369-550, gnl|fr1|chrUn (76903307-76903096) | |
| 369-550, gnl|galGal2|chrUn (161580364-161580563) | |
| 369-550, gnl|hg17|chr22 (44991638-44991846) | |
| 369-550, gnl|Hg17|chr22 (44991663-44991844) | |
| 369-550, gnl|loxAfr1|scaffold_159079 (4132-4340) | |
| 369-550, gnl|mm7|chr15 (85921061-85921253) | |
| 369-550, gnl|Mm7|chr15 (85921070-85921251) | |
| 369-550, gnl|monDom2|scaffold_107 (1308654-1308850) | |
| 369-550, gnl|oryCun1|scaffold_189141 (24800-24593) | |
| 369-550, gnl|panTro1|chr23 (45305557-45305765) | |
| 369-550, gnl|rheMac2|chr10 (90290380-90290588) | |
| 369-550, gnl|rn3|chr7 (123877453-123877650) | |
| 369-550, gnl|tetNig1|chr13 (2017412-2017234) | |
| 369-550, gnl|xenTro1|scaffold_1162 (85887-85697) | |
| 618-740, gnl|bosTau2|chr5 (73926221-73926099) | |
| 618-740, gnl|canFam2|chr10 (22953791-22953665) | |
| 618-740, gnl|danRer3|chr18 (9689961-9689836) | |
| 618-740, gnl|echTel1|scaffold_306786 (3207-3334) | |
| 618-740, gnl|fr1|chrUn (76902614-76902488) | |
| 618-740, gnl|galGal2|chrUn (161584081-161584207) | |
| 618-740, gnl|hg17|chr22 (44998012-44998138) | |
| 618-740, gnl|Hg17|chr22 (44998013-44998135) | |
| 618-740, gnl|loxAfr1|scaffold_37184 (21220-21346) | |
| 618-740, gnl|mm7|chr15 (85926814-85926940) | |
| 618-740, gnl|Mm7|chr15 (85926815-85926937) | |
| 618-740, gnl|monDom2|scaffold_107 (1313807-1313933) | |
| 618-740, gnl|oryCun1|scaffold_189141 (18638-18512) | |
| 618-740, gnl|panTro1|chr23 (45311928-45312054) | |
| 618-740, gnl|rheMac2|chr10 (90296518-90296644) | |
| 618-740, gnl|rn3|chr7 (123882229-123882355) | |
| 618-740, gnl|tetNig1|chr13 (2017044-2016918) | |
| 618-740, gnl|xenTro1|scaffold_1162 (84382-84257) | |
| 1079-1246, gnl|bosTau2|chr5 (73918121-73917954) | |
| 1079-1246, gnl|canFam2|chr10 (22945702-22945569) | |
| 1079-1246, gnl|danRer3|chr18 (9668371-9668236) | |
| 1079-1246, gnl|fr1|chrUn (76900236-76900125) | |
| 1079-1246, gnl|galGal2|chrUn (161590804-161590916) | |
| 1079-1246, gnl|hg17|chr22 (45005791-45005924) | |
| 1079-1246, gnl|Hg17|chr22 (45005810-45005977) | |
| 1079-1246, gnl|mm7|chr15 (85935917-85936055) | |
| 1079-1246, gnl|Mm7|chr15 (85935944-85936109) | |
| 1079-1246, gnl|oryCun1|scaffold_189141 (11588-11457) | |
| 1079-1246, gnl|panTro1|chr23 (45319705-45319838) | |
| 1079-1246, gnl|rheMac2|chr10 (90304267-90304400) | |
| 1079-1246, gnl|rn3|chr7 (123890102-123890227) | |
| 1079-1246, gnl|tetNig1|chr13 (2015131-2015020) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| csp (0.161186) | |
| cty (0.10408) |