Ss1.1-Liv1-LVR010013A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTCAGACAGGTGCAAGCCCAGCTGGGCTGGGTCTCTGCGCCACCGAGCCCATCTCCT GGGGGATGGGGTGGGCCGTGTTTCCTTGACAGACCTTCCGGCGGAGCGGAGACCATGGCC CCTCCTCAGGGCCCCCGGGCCCCGCTGGAATTCGGAGGACCCCTGGGTGCTGCGGCGCTG ATGCTGCTGCTCCCCGCCACCATGTTCCACCTGCTACTGGCAGCCCGTTCGGGCCCGGCG CGTCTCCTGGGCCCACCCCCCTACCTGCCCGGACTCGAGATGCTGTGGAGCCCGTGGGCG CTGTTTCTGTGTCTCGCCTGGCTCGGCCTGCAGGCGGCGCTCTACCTCTTGCCGGCGCGC AAGGTGGCCGAGGGGCAGGAACTGAAGGACAAGAGACGACTGCTCTACCCCATTAACGGC TTCCAGGCCCTGGTGCTGACAGCCCTATTGGTGGGCCTGGGGGTGTTAGCCAGGCTGCCC CTGGGCGCGCTCCCAGAAATGCTCCTGCCCTTGGCATTTTCCGCCACCCTCATCGCCTTC GTCGGCAGCCTCCTTCTCTATCTGAAGGCTCTGGTAGCCCCTGCCTCCGCCCTGGCACCT GGCGGGAACTCAGGCAACCCCGTTTACGACTTTTTCCTGGGACGGGAGCTCAACCCACGC ATCTGTTCCTTTGACTTCAAATATTTCTGCGAACTGCGGCCTGGCCTCATCGGCTGGGTC CTCATCAACCTGGCCTTGCTGATGCAGGAGGCAGAACTTCGCGGGAGTCCCTCACTGGCC ATGTGGCTGGTCAATGGCTTCCAGCTACTATACGTGGGAGATGCCCTTTGGCACGAGGAG GCGGTCCTCACCACCATGGACATCATCCACGATGGGTTTGGCTTCATGCTGGCCTTCGGG GACCTCGCCTGGGTCCCTTTCACCTACAGCCTGCAGGCGCAGTTCCTGCTGTACCACCCA CAGCCCCTGGGGTTGCCCGGGGCCTCGGTCATCTGCCTCATCAACGCTGTTGGATACTAC ATTTTCCGTGGAGCCAATTCTCAGAAAAACACCTTCCGAAAGAATCCTTCTGATCCCAGA GTGGCCGACCTTGAGACCATCCCTACAGCCACAGGGCGACAGCTGCTGGTGTCCGGATGG TGGGGTATGGTCCGCCATCCCAACTACCTTGGAGACCTCATCATGGCTCTGGCCTGGTCC CTGCCCTGCGGGGTGTCCCACCTGTTGCCCTACTTCTACCTCCTCTACTTCACTGCGCTG CTGGTGCACCGGGAGGCCCGCGATGAGCAGCAGTGTCTACAGAAGTATGGCTTGGCCTGG CACGAATACTGCCGGCGGGTGCCCTACCGAATCATGCCCTATGTCTACTGAAGTAGCTCC ACGCACCCCAGGCCGGGCATATGCAGGCAGGCCCATCTGCCAGCACACCCAGCACCAGGG GCCTGGACATGCCTGGGACTTCAGGGCCGGCACCCTACCCCACCCTGAGCTCCAACAGGC AGCGGTGAACAGCCTCAGACAGGGGGTTGGAGCAAGGGCAAGATGAAGCCCATGCTCAAA AACGGAGTGGAGGGGCTGCTCTTCCCCCTTGGATAAACATCTGGAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTCAGACAGGTGCAAGCCCAGCTGGGCTGGGTCTCTGCGCCACCGAGCCCATCTCCT GGGGGATGGGGTGGGCCGTGTTTCCTTGACAGACCTTCCGGCGGAGCGGAGACCATGGCC CCTCCTCAGGGCCCCCGGGCCCCGCTGGAATTCGGAGGACCCCTGGGTGCTGCGGCGCTG ATGCTGCTGCTCCCCGCCACCATGTTCCACCTGCTACTGGCAGCCCGTTCGGGCCCGGCG CGTCTCCTGGGCCCACCCCCCTACCTGCCCGGACTCGAGATGCTGTGGAGCCCGTGGGCG CTGTTTCTGTGTCTCGCCTGGCTCGGCCTGCAGGCGGCGCTCTACCTCTTGCCGGCGCGC AAGGTGGCCGAGGGGCAGGAACTGAAGGACAAGAGACGACTGCTCTACCCCATTAACGGC TTCCAGGCCCTGGTGCTGACAGCCCTATTGGTGGGCCTGGGGGTGTTAGCCAGGCTGCCC CTGGGCGCGCTCCCAGAAATGCTCCTGCCCTTGGCATTTTCCGCCACCCTCATCGCCTTC GTCGGCAGCCTCCTTCTCTATCTGAAGGCTCTGGTAGCCCCTGCCTCCGCCCTGGCACCT GGCGGGAACTCAGGCAACCCCGTTTACGACTTTTTCCTGGGACGGGAGCTCAACCCACGC ATCTGTTCCTTTGACTTCAAATATTTCTGCGAACTGCGGCCTGGCCTCATCGGCTGGGTC CTCATCAACCTGGCCTTGCTGATGCAGGAGGCAGAACTTCGCGGGAGTCCCTCACTGGCC ATGTGGCTGGTCAATGGCTTCCAGCTACTATACGTGGGAGATGCCCTTTGGCACGAGGAG GCGGTCCTCACCACCATGGACATCATCCACGATGGGTTTGGCTTCATGCTGGCCTTCGGG GACCTCGCCTGGGTCCCTTTCACCTACAGCCTGCAGGCGCAGTTCCTGCTGTACCACCCA CAGCCCCTGGGGTTGCCCGGGGCCTCGGTCATCTGCCTCATCAACGCTGTTGGATACTAC ATTTTCCGTGGAGCCAATTCTCAGAAAAACACCTTCCGAAAGAATCCTTCTGATCCCAGA GTGGCCGACCTTGAGACCATCCCTACAGCCACAGGGCGACAGCTGCTGGTGTCCGGATGG TGGGGTATGGTCCGCCATCCCAACTACCTTGGAGACCTCATCATGGCTCTGGCCTGGTCC CTGCCCTGCGGGGTGTCCCACCTGTTGCCCTACTTCTACCTCCTCTACTTCACTGCGCTG CTGGTGCACCGGGAGGCCCGCGATGAGCAGCAGTGTCTACAGAAGTATGGCTTGGCCTGG CACGAATACTGCCGGCGGGTGCCCTACCGAATCATGCCCTATGTCTACTGAAGTAGCTCC ACGCACCCCAGGCCGGGCATATGCAGGCAGGCCCATCTGCCAGCACACCCAGCACCAGGG GCCTGGACATGCCTGGGACTTCAGGGCCGGCACCCTACCCCACCCTGAGCTCCAACAGGC AGCGGTGAACAGCCTCAGACAGGGGGTTGGAGCAAGGGCAAGATGAAGCCCATGCTCAAA AACGGAGTGGAGGGGCTGCTCTTCCCCCTTGGATAAACATCTGGAACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 457-1216, + strand, RNAz p=0.936872 | |
| 887-1004, - strand, RNAz p=0.517894 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 457-1216, + strand, RNAz p=0.936872 | |
| 887-1004, - strand, RNAz p=0.517894 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 161-366, gnl|bosTau2|chr29 (34235818-34236023) | |
| 161-366, gnl|canFam2|chr18 (55108158-55107943) | |
| 161-366, gnl|danRer3|chr10 (21860113-21860314) | |
| 161-366, gnl|echTel1|scaffold_292926 (3312-3099) | |
| 161-366, gnl|fr1|chrUn (5662974-5663187) | |
| 161-366, gnl|hg17|chr11 (64636553-64636766) | |
| 161-366, gnl|Hg17|chr11 (64636557-64636762) | |
| 161-366, gnl|loxAfr1|scaffold_6967 (35523-35736) | |
| 161-366, gnl|mm7|chr19 (5962137-5961924) | |
| 161-366, gnl|Mm7|chr19 (5962130-5961926) | |
| 161-366, gnl|monDom2|scaffold_107 (3922393-3922180) | |
| 161-366, gnl|rheMac2|chr14 (9326352-9326139) | |
| 161-366, gnl|rn3|chr1 (208858056-208857843) | |
| 161-366, gnl|tetNig1|chr7 (7017368-7017155) | |
| 161-366, gnl|xenTro1|scaffold_251 (1396232-1396441) | |
| 418-614, gnl|bosTau2|chr29 (34236531-34236727) | |
| 418-614, gnl|canFam2|chr18 (55107436-55107235) | |
| 418-614, gnl|echTel1|scaffold_292926 (2662-2461) | |
| 418-614, gnl|fr1|chrUn (5663592-5663753) | |
| 418-614, gnl|hg17|chr11 (64637264-64637465) | |
| 418-614, gnl|Hg17|chr11 (64637267-64637463) | |
| 418-614, gnl|loxAfr1|scaffold_6967 (36150-36351) | |
| 418-614, gnl|mm7|chr19 (5961505-5961304) | |
| 418-614, gnl|Mm7|chr19 (5961500-5961304) | |
| 418-614, gnl|monDom2|scaffold_107 (3921834-3921633) | |
| 418-614, gnl|oryCun1|scaffold_190568 (4859-5060) | |
| 418-614, gnl|panTro1|chr9 (65884397-65884598) | |
| 418-614, gnl|rheMac2|chr14 (9325639-9325438) | |
| 418-614, gnl|rn3|chr1 (208857494-208857293) | |
| 418-614, gnl|xenTro1|scaffold_251 (1398413-1398614) | |
| 836-1004, gnl|bosTau2|chr29 (34238570-34238738) | |
| 836-1004, gnl|Hg17|chr11 (64638959-64639127) | |
| 836-1004, gnl|Mm7|chr19 (5958798-5958630) | |
| 1102-1216, gnl|bosTau2|chr14 (36225167-36225053) | |
| 1102-1216, gnl|Hg17|chr11 (64639538-64639652) | |
| 1102-1216, gnl|Mm7|chr19 (5958231-5958124) | |
| 1219-1388, gnl|bosTau2|chr16 (16892215-16892384) | |
| 1219-1388, gnl|Hg17|chr1 (221897892-221897723) | |
| 1219-1388, gnl|Mm7|chr1 (181801005-181800839) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-366, gnl|bosTau2|chr29 (34235818-34236023) | |
| 161-366, gnl|canFam2|chr18 (55108158-55107943) | |
| 161-366, gnl|danRer3|chr10 (21860113-21860314) | |
| 161-366, gnl|echTel1|scaffold_292926 (3312-3099) | |
| 161-366, gnl|fr1|chrUn (5662974-5663187) | |
| 161-366, gnl|hg17|chr11 (64636553-64636766) | |
| 161-366, gnl|Hg17|chr11 (64636557-64636762) | |
| 161-366, gnl|loxAfr1|scaffold_6967 (35523-35736) | |
| 161-366, gnl|mm7|chr19 (5962137-5961924) | |
| 161-366, gnl|Mm7|chr19 (5962130-5961926) | |
| 161-366, gnl|monDom2|scaffold_107 (3922393-3922180) | |
| 161-366, gnl|rheMac2|chr14 (9326352-9326139) | |
| 161-366, gnl|rn3|chr1 (208858056-208857843) | |
| 161-366, gnl|tetNig1|chr7 (7017368-7017155) | |
| 161-366, gnl|xenTro1|scaffold_251 (1396232-1396441) | |
| 418-614, gnl|bosTau2|chr29 (34236531-34236727) | |
| 418-614, gnl|canFam2|chr18 (55107436-55107235) | |
| 418-614, gnl|echTel1|scaffold_292926 (2662-2461) | |
| 418-614, gnl|fr1|chrUn (5663592-5663753) | |
| 418-614, gnl|hg17|chr11 (64637264-64637465) | |
| 418-614, gnl|Hg17|chr11 (64637267-64637463) | |
| 418-614, gnl|loxAfr1|scaffold_6967 (36150-36351) | |
| 418-614, gnl|mm7|chr19 (5961505-5961304) | |
| 418-614, gnl|Mm7|chr19 (5961500-5961304) | |
| 418-614, gnl|monDom2|scaffold_107 (3921834-3921633) | |
| 418-614, gnl|oryCun1|scaffold_190568 (4859-5060) | |
| 418-614, gnl|panTro1|chr9 (65884397-65884598) | |
| 418-614, gnl|rheMac2|chr14 (9325639-9325438) | |
| 418-614, gnl|rn3|chr1 (208857494-208857293) | |
| 418-614, gnl|xenTro1|scaffold_251 (1398413-1398614) | |
| 836-1004, gnl|bosTau2|chr29 (34238570-34238738) | |
| 836-1004, gnl|Hg17|chr11 (64638959-64639127) | |
| 836-1004, gnl|Mm7|chr19 (5958798-5958630) | |
| 1102-1216, gnl|bosTau2|chr14 (36225167-36225053) | |
| 1102-1216, gnl|Hg17|chr11 (64639538-64639652) | |
| 1102-1216, gnl|Mm7|chr19 (5958231-5958124) | |
| 1219-1388, gnl|bosTau2|chr16 (16892215-16892384) | |
| 1219-1388, gnl|Hg17|chr1 (221897892-221897723) | |
| 1219-1388, gnl|Mm7|chr1 (181801005-181800839) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| fli (1.21729) | |
| cov (0.528611) | |
| cli (0.458435) | |
| nep (0.36785) | |
| clu (0.358938) | |
| ebs (0.354904) | |
| pty (0.285429) | |
| fce (0.271592) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (1.21729) | |
| cov (0.528611) | |
| cli (0.458435) | |
| nep (0.36785) | |
| clu (0.358938) | |
| ebs (0.354904) | |
| pty (0.285429) | |
| fce (0.271592) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |