Ss1.1-Liv1-LVR010013B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTATTGGCCGAGACTTTCAGCGGTTGAAGCCAGTCCTGCGATCGGCCACCTCCAGTTCTG CCGACCCACCCACCAGCCAGCAAGGTGCTGCCGAATCGAATCCAAACTGAGACAGGCTGG GGCGGGGGCCGGCAGTTGCAGTTAAGAGTTTGGACCAATCAGTCCTCGGCCCCACTTCTC TCGACCAATAGGAAGTGGGCTAGGGCGCAGGGGCGGAAAATGTGGCTACATGAGCAGGCG TCAGAGCCAATCAGCCGTGGGCCTCGTTCCAGTCCGCCAACCAGCAGCCAGAGCGGGTCT GGGGGCGGGAGGCCAGAGCAGCTGTCAGGCCAAAGTCCAGCGAGCTACGCGCGGAGGGGC GGCTGGAGGAAGCGGGGCGCCGGGCCGGGCCCTGGAGATGGTCCCCGGCGCCGCGGGCTG GTGTTGTCTCATGCTCTGGCTCCCCGCGTGCGTCGCGGCCCATGGCTTACGCATCCATGA TTACTTGTATTTTCAAGTGCTGAGTCCTGGGGACATTCGATACATCTTCACAGCCACACC TGCCAAGGACTTTGGTGGCATCTTTCACACAAGGTATGAGCAGATTCACCTCGTCCCTGC TGAACCTTCAGAGGCCTGCGGGGAGCTCAGCAACGGTTTCTTCATCCAGGACCAGATCGC CCTGGTGGAGAGGGGGGGCTGCTCCTTCCTCTCCAAGACCCGGGTGGTGCAGGAGCACGG TGGGCGGGCAGTGATCATCTCTGACAACGCGGTTGACAATGACAGTTTCTACGTGGAGAT GATCCAGGACAGTACCCAGCGCACAGCTGATATCCCTGCCCTCTTCCTGCTCGGCCGAGA TGGCTACATGATCCGCCGCTCCCTGGAACAGCATGGGCTGCCATGGGCCATCATTTCCAT CCCAGTCAATGTCACCAGCATTCCCACCTTTGAGCTGCTGCAACCGCCCTGGACCTTCTG GTAGAAGAGTTGGTCCTACCTTCCAGCCATAAGCAACTCTGGGCTGGGAAGGGGAAGTCT AAGAATTCTGCTGTTTGGGATCTGGGGACTGGTGGAGCCAGGTAGAGGGCAAGGGCTTGG GCCCCGGCTAAGCTAAGAGAAGCCACGCCACGGGCCTTTCCCTTCCCGGGGCTCCCTAAG GTGTCTCATGCTGAGAAGAGGCAAGAGCCAGACCACAGGGCTTGTGAGCTAGGGTCTGGA ACAAAAGGAGCCAATGGCAGGTACTCTGAGAGCCATCTGAGATCTGTCACATTCCCCCTG GCTCCAGCCTCCCCACCCAAGGTCTTTCACAGCAGTCGCTGGAATGTATGAAGGAGCTGG TGTTTGAGGACTTAATAAACCCTCACTGACTTTTTAGCAATAAAAAAACTCGTCAGGGTA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTATTGGCCGAGACTTTCAGCGGTTGAAGCCAGTCCTGCGATCGGCCACCTCCAGTTCTG CCGACCCACCCACCAGCCAGCAAGGTGCTGCCGAATCGAATCCAAACTGAGACAGGCTGG GGCGGGGGCCGGCAGTTGCAGTTAAGAGTTTGGACCAATCAGTCCTCGGCCCCACTTCTC TCGACCAATAGGAAGTGGGCTAGGGCGCAGGGGCGGAAAATGTGGCTACATGAGCAGGCG TCAGAGCCAATCAGCCGTGGGCCTCGTTCCAGTCCGCCAACCAGCAGCCAGAGCGGGTCT GGGGGCGGGAGGCCAGAGCAGCTGTCAGGCCAAAGTCCAGCGAGCTACGCGCGGAGGGGC GGCTGGAGGAAGCGGGGCGCCGGGCCGGGCCCTGGAGATGGTCCCCGGCGCCGCGGGCTG GTGTTGTCTCATGCTCTGGCTCCCCGCGTGCGTCGCGGCCCATGGCTTACGCATCCATGA TTACTTGTATTTTCAAGTGCTGAGTCCTGGGGACATTCGATACATCTTCACAGCCACACC TGCCAAGGACTTTGGTGGCATCTTTCACACAAGGTATGAGCAGATTCACCTCGTCCCTGC TGAACCTTCAGAGGCCTGCGGGGAGCTCAGCAACGGTTTCTTCATCCAGGACCAGATCGC CCTGGTGGAGAGGGGGGGCTGCTCCTTCCTCTCCAAGACCCGGGTGGTGCAGGAGCACGG TGGGCGGGCAGTGATCATCTCTGACAACGCGGTTGACAATGACAGTTTCTACGTGGAGAT GATCCAGGACAGTACCCAGCGCACAGCTGATATCCCTGCCCTCTTCCTGCTCGGCCGAGA TGGCTACATGATCCGCCGCTCCCTGGAACAGCATGGGCTGCCATGGGCCATCATTTCCAT CCCAGTCAATGTCACCAGCATTCCCACCTTTGAGCTGCTGCAACCGCCCTGGACCTTCTG GTAGAAGAGTTGGTCCTACCTTCCAGCCATAAGCAACTCTGGGCTGGGAAGGGGAAGTCT AAGAATTCTGCTGTTTGGGATCTGGGGACTGGTGGAGCCAGGTAGAGGGCAAGGGCTTGG GCCCCGGCTAAGCTAAGAGAAGCCACGCCACGGGCCTTTCCCTTCCCGGGGCTCCCTAAG GTGTCTCATGCTGAGAAGAGGCAAGAGCCAGACCACAGGGCTTGTGAGCTAGGGTCTGGA ACAAAAGGAGCCAATGGCAGGTACTCTGAGAGCCATCTGAGATCTGTCACATTCCCCCTG GCTCCAGCCTCCCCACCCAAGGTCTTTCACAGCAGTCGCTGGAATGTATGAAGGAGCTGG TGTTTGAGGACTTAATAAACCCTCACTGACTTTTTAGCAATAAAAAAACTCGTCAGGGTA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 963-1185, + strand, RNAz p=0.904956 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 963-1185, + strand, RNAz p=0.904956 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_032319, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 7-465, gnl|bosTau2|chr11 (8924078-8923613) | |
| 7-465, gnl|canFam2|chr17 (52707319-52706905) | |
| 7-465, gnl|dasNov1|scaffold_41541 (11686-11276) | |
| 7-465, gnl|echTel1|scaffold_315836 (41248-40849) | |
| 7-465, gnl|hg17|chr2 (73371828-73372244) | |
| 7-465, gnl|Hg17|chr2 (73372340-73371876) | |
| 7-465, gnl|mm7|chr6 (85480720-85481106) | |
| 7-465, gnl|Mm7|chr6 (85481165-85480757) | |
| 7-465, gnl|monDom2|scaffold_637 (5237-5702) | |
| 7-465, gnl|oryCun1|scaffold_193007 (20699-21110) | |
| 7-465, gnl|panTro1|chr12 (75780482-75780893) | |
| 7-465, gnl|rheMac2|chr13 (73537047-73537458) | |
| 7-465, gnl|rn3|chr4 (119950242-119950615) | |
| 566-676, gnl|bosTau2|chr11 (8920935-8920825) | |
| 566-676, gnl|canFam2|chr17 (52709979-52710089) | |
| 566-676, gnl|dasNov1|scaffold_41541 (14008-14116) | |
| 566-676, gnl|echTel1|scaffold_315836 (46673-46783) | |
| 566-676, gnl|Hg17|chr2 (73368353-73368243) | |
| 566-676, gnl|hg17|chr3 (36992944-36993052) | |
| 566-676, gnl|mm7|chr6 (85477691-85477581) | |
| 566-676, gnl|Mm7|chr6 (85477690-85477580) | |
| 566-676, gnl|monDom2|scaffold_637 (3436-3326) | |
| 566-676, gnl|oryCun1|scaffold_193007 (17619-17509) | |
| 566-676, gnl|panTro1|chr2_random (34053528-34053420) | |
| 566-676, gnl|rheMac2|chr2 (99579260-99579154) | |
| 566-676, gnl|xenTro1|scaffold_778 (349567-349665) | |
| 843-1379, gnl|bosTau2|chr11 (8920163-8919614) | |
| 843-1379, gnl|Hg17|chr2 (73367358-73366794) | |
| 843-1379, gnl|Mm7|chr6 (85476943-85476448) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-465, gnl|bosTau2|chr11 (8924078-8923613) | |
| 7-465, gnl|canFam2|chr17 (52707319-52706905) | |
| 7-465, gnl|dasNov1|scaffold_41541 (11686-11276) | |
| 7-465, gnl|echTel1|scaffold_315836 (41248-40849) | |
| 7-465, gnl|hg17|chr2 (73371828-73372244) | |
| 7-465, gnl|Hg17|chr2 (73372340-73371876) | |
| 7-465, gnl|mm7|chr6 (85480720-85481106) | |
| 7-465, gnl|Mm7|chr6 (85481165-85480757) | |
| 7-465, gnl|monDom2|scaffold_637 (5237-5702) | |
| 7-465, gnl|oryCun1|scaffold_193007 (20699-21110) | |
| 7-465, gnl|panTro1|chr12 (75780482-75780893) | |
| 7-465, gnl|rheMac2|chr13 (73537047-73537458) | |
| 7-465, gnl|rn3|chr4 (119950242-119950615) | |
| 566-676, gnl|bosTau2|chr11 (8920935-8920825) | |
| 566-676, gnl|canFam2|chr17 (52709979-52710089) | |
| 566-676, gnl|dasNov1|scaffold_41541 (14008-14116) | |
| 566-676, gnl|echTel1|scaffold_315836 (46673-46783) | |
| 566-676, gnl|Hg17|chr2 (73368353-73368243) | |
| 566-676, gnl|hg17|chr3 (36992944-36993052) | |
| 566-676, gnl|mm7|chr6 (85477691-85477581) | |
| 566-676, gnl|Mm7|chr6 (85477690-85477580) | |
| 566-676, gnl|monDom2|scaffold_637 (3436-3326) | |
| 566-676, gnl|oryCun1|scaffold_193007 (17619-17509) | |
| 566-676, gnl|panTro1|chr2_random (34053528-34053420) | |
| 566-676, gnl|rheMac2|chr2 (99579260-99579154) | |
| 566-676, gnl|xenTro1|scaffold_778 (349567-349665) | |
| 843-1379, gnl|bosTau2|chr11 (8920163-8919614) | |
| 843-1379, gnl|Hg17|chr2 (73367358-73366794) | |
| 843-1379, gnl|Mm7|chr6 (85476943-85476448) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cbr (1.27975) | |
| cli (0.305623) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cki (0.165235) | |
| eli (0.151814) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.27975) | |
| cli (0.305623) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cki (0.165235) | |
| eli (0.151814) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jej (0.0989218) |