Ss1.1-Liv1-LVR010013C01.5
|
CGGCTGCTAAAGATGGCGGCTTCCTAGCGAGTCGACAGCCGGGTTGGAAGGAGGTTCAGG
CTACGGGAAGAATCCTGGCTTCTCCCATCCCTACTCCATCTAGCCACTCAGGAGCCATGG
AGGTGGTGGAGCCCAGCAGTCCCACTGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGC
AGTCTGCTGAGCCCAGGCCCCGCACTCGCTCCAACCCTGAGGGGGCTGAGGACCGGGCAC
TGGGGGCCCAGGCCAGTGTGGGCAGCCGCAGTGAGGGCGAAGGTGAAGCAGCCAGTGCTG
ATGATGGGACCCTCAACCCCCCAGGAGCCGGCCCCAAGCCCTGGCAGGTGCCTCCACCAA
CCCCGGAGGTCCAGGTACGGACGCCAAGGGTCAACTGTCCAGAGAAAGTGATCATCTGCC
TGGACCTGTCGGAGGAAATGTCGTTGCCAAAGCTGGAGTCATTCAATGGCTCCAAAACCA
ATGCCCTCAACGTCTCCCAGAAAATGATTGAAATGTTTGTGCGGACAAAACACAAGATCG
ACAAGAGCCATGAATTCGCATTGGTCGTGGTGAATGACGACACCGCCTGGCTGTCCGGCC
TGACCTCTGACCCCCGTGAACTCTGCAGCTGCCTCTATGACCTGGAGACGGCCTCCTGCT
CCACCTTCAATCTGGAAGGTCTCTTCAGCCTCATCCAGCAGAAGACGGAGCTGCCAGTCA
CAGAGAACGTGCAGACGATTCCACCACCATACGTGGTCCGCACCATCCTCGTCTATAGCC
GTCCACCCTGCCAGCCCCAGTTCTCTCTGACGGAGCCCATGAAGAAAATGTTCCAGTGCC
CGTATTTCTTCTTCGATGTTGTCTACATCCACAATGGCGCCGAAGAGAAGGAGGAGGAGA
TGAGCTGGAAGGACATGTTTGCCTTCATGGGCAGCCTGGATACCAAGGGTACCAGCTATA
AGTATGAGGTGGCGCTGGCTGGGCCAGCCCTTGAGCTGCACAACTGTATGGCCAAACTGC
TGGCTCACCCACTGCAGCGGCCTTGCCAAAGCCATGCCTCCTACAGCCTGCTGGAGGAAG
ATGATGAAGCTACTGAAGTTGAGGCCACTGTCTGAACCATCCCCGTACAGCCAACCATCT
TGTACAATGAAGCCCTGGCCTAGGACTCTGGTTCTTAAACTAGGCTATGGATGACCACCA
GATGGGGTTTCCAGGAGGTACCCAAGGCACCTGAGGAGCCCTGAAGGATACCCAGGATTC
CAGGAAACATCCCAGGGACTCTAGGCACCCCTTCCTCATGTTTCTCAGCCCACATCCCAC
CCCCAATTCTTCAGTTGTAATTTTTATTGTTCCCTCTGTGAGTTTTGACATCAAAATAAA
AATCTCAGAATCTCTAACCCAGGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGCTGCTAAAGATGGCGGCTTCCTAGCGAGTCGACAGCCGGGTTGGAAGGAGGTTCAGG
CTACGGGAAGAATCCTGGCTTCTCCCATCCCTACTCCATCTAGCCACTCAGGAGCCATGG
AGGTGGTGGAGCCCAGCAGTCCCACTGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGC
AGTCTGCTGAGCCCAGGCCCCGCACTCGCTCCAACCCTGAGGGGGCTGAGGACCGGGCAC
TGGGGGCCCAGGCCAGTGTGGGCAGCCGCAGTGAGGGCGAAGGTGAAGCAGCCAGTGCTG
ATGATGGGACCCTCAACCCCCCAGGAGCCGGCCCCAAGCCCTGGCAGGTGCCTCCACCAA
CCCCGGAGGTCCAGGTACGGACGCCAAGGGTCAACTGTCCAGAGAAAGTGATCATCTGCC
TGGACCTGTCGGAGGAAATGTCGTTGCCAAAGCTGGAGTCATTCAATGGCTCCAAAACCA
ATGCCCTCAACGTCTCCCAGAAAATGATTGAAATGTTTGTGCGGACAAAACACAAGATCG
ACAAGAGCCATGAATTCGCATTGGTCGTGGTGAATGACGACACCGCCTGGCTGTCCGGCC
TGACCTCTGACCCCCGTGAACTCTGCAGCTGCCTCTATGACCTGGAGACGGCCTCCTGCT
CCACCTTCAATCTGGAAGGTCTCTTCAGCCTCATCCAGCAGAAGACGGAGCTGCCAGTCA
CAGAGAACGTGCAGACGATTCCACCACCATACGTGGTCCGCACCATCCTCGTCTATAGCC
GTCCACCCTGCCAGCCCCAGTTCTCTCTGACGGAGCCCATGAAGAAAATGTTCCAGTGCC
CGTATTTCTTCTTCGATGTTGTCTACATCCACAATGGCGCCGAAGAGAAGGAGGAGGAGA
TGAGCTGGAAGGACATGTTTGCCTTCATGGGCAGCCTGGATACCAAGGGTACCAGCTATA
AGTATGAGGTGGCGCTGGCTGGGCCAGCCCTTGAGCTGCACAACTGTATGGCCAAACTGC
TGGCTCACCCACTGCAGCGGCCTTGCCAAAGCCATGCCTCCTACAGCCTGCTGGAGGAAG
ATGATGAAGCTACTGAAGTTGAGGCCACTGTCTGAACCATCCCCGTACAGCCAACCATCT
TGTACAATGAAGCCCTGGCCTAGGACTCTGGTTCTTAAACTAGGCTATGGATGACCACCA
GATGGGGTTTCCAGGAGGTACCCAAGGCACCTGAGGAGCCCTGAAGGATACCCAGGATTC
CAGGAAACATCCCAGGGACTCTAGGCACCCCTTCCTCATGTTTCTCAGCCCACATCCCAC
CCCCAATTCTTCAGTTGTAATTTTTATTGTTCCCTCTGTGAGTTTTGACATCAAAATAAA
AATCTCAGAATCTCTAACCCAGGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
61-457, gnl|bosTau2|chr7 (2812906-2812510) |
|
61-457, gnl|Hg17|chr19 (17240560-17240893) |
|
61-457, gnl|Mm7|chr8 (69864569-69864914) |
| |
|
469-593, gnl|bosTau2|chr7 (2811358-2811234) |
|
469-593, gnl|Hg17|chr19 (17245712-17245836) |
|
469-593, gnl|Mm7|chr8 (69866422-69866549) |
| |
|
692-824, gnl|bosTau2|chr7 (2809836-2809704) |
|
692-824, gnl|canFam2|chr20 (48471848-48471701) |
|
692-824, gnl|danRer3|chr11 (3709378-3709513) |
|
692-824, gnl|echTel1|scaffold_249410 (1440-1293) |
|
692-824, gnl|fr1|chrUn (126880867-126881006) |
|
692-824, gnl|hg17|chr19 (17248289-17248436) |
|
692-824, gnl|Hg17|chr19 (17248301-17248433) |
|
692-824, gnl|mm7|chr8 (69869626-69869773) |
|
692-824, gnl|Mm7|chr8 (69869638-69869770) |
|
692-824, gnl|monDom2|scaffold_100 (4328633-4328781) |
|
692-824, gnl|panTro1|chr20 (17944760-17944906) |
|
692-824, gnl|rheMac2|chr19 (16832065-16832212) |
|
692-824, gnl|rn3|chr16 (18562126-18562273) |
|
692-824, gnl|tetNig1|chr1 (14949413-14949555) |
|
692-824, gnl|xenTro1|scaffold_83 (241112-240965) |
| |
|
910-1404, gnl|bosTau2|chr7 (2808481-2807989) |
|
910-1404, gnl|Hg17|chr19 (17250652-17251153) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
61-457, gnl|bosTau2|chr7 (2812906-2812510) |
|
61-457, gnl|Hg17|chr19 (17240560-17240893) |
|
61-457, gnl|Mm7|chr8 (69864569-69864914) |
| |
|
469-593, gnl|bosTau2|chr7 (2811358-2811234) |
|
469-593, gnl|Hg17|chr19 (17245712-17245836) |
|
469-593, gnl|Mm7|chr8 (69866422-69866549) |
| |
|
692-824, gnl|bosTau2|chr7 (2809836-2809704) |
|
692-824, gnl|canFam2|chr20 (48471848-48471701) |
|
692-824, gnl|danRer3|chr11 (3709378-3709513) |
|
692-824, gnl|echTel1|scaffold_249410 (1440-1293) |
|
692-824, gnl|fr1|chrUn (126880867-126881006) |
|
692-824, gnl|hg17|chr19 (17248289-17248436) |
|
692-824, gnl|Hg17|chr19 (17248301-17248433) |
|
692-824, gnl|mm7|chr8 (69869626-69869773) |
|
692-824, gnl|Mm7|chr8 (69869638-69869770) |
|
692-824, gnl|monDom2|scaffold_100 (4328633-4328781) |
|
692-824, gnl|panTro1|chr20 (17944760-17944906) |
|
692-824, gnl|rheMac2|chr19 (16832065-16832212) |
|
692-824, gnl|rn3|chr16 (18562126-18562273) |
|
692-824, gnl|tetNig1|chr1 (14949413-14949555) |
|
692-824, gnl|xenTro1|scaffold_83 (241112-240965) |
| |
|
910-1404, gnl|bosTau2|chr7 (2808481-2807989) |
|
910-1404, gnl|Hg17|chr19 (17250652-17251153) |
|
ton (0.877501) |
|
tbr (0.616713) |
|
clu (0.478583) |
|
ece (0.45861) |
|
eli (0.303628) |
|
cag (0.302389) |
|
fce (0.271592) |
|
eep (0.245128) |
|
cly (0.241284) |
|
nbm (0.198649) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
csp (0.161186) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
ldo (0.0970026) |
|
ton (0.877501) |
|
tbr (0.616713) |
|
clu (0.478583) |
|
ece (0.45861) |
|
eli (0.303628) |
|
cag (0.302389) |
|
fce (0.271592) |
|
eep (0.245128) |
|
cly (0.241284) |
|
nbm (0.198649) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
csp (0.161186) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
ldo (0.0970026) |
