Ss1.1-Liv1-LVR010013C03.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCTTCTCTCCTCTGCATGACTGCGCTCTCCCTGGACACAGAGTGGATGAAGCCGCTGC AGGAGAACCAGGGATCCCCAGAGAGGCCTTGAGAAATGTGGCTCGTATACCTCCTGGTGC CAGGCCTGTTCTACAGCTTGGGGGGCACCACGCCCCTCCCTCAGAAGCTCTTTGGGGAGG TGACATCCCCTCGGTACCCCAAGCCTTACCCCAACAACTTTGAGACAACCACTGTCATCA CAGTCCCCACGGGATACAGGGTGAAGCTGGTCTTCTGGCAGTTTGACCTGGAGCCTTCGG AAGGCTGTTTCTATGACTATGTCAAGATCTCTGCGGATAAGAAAACGCTGGGGAGGTTCT GCGGGCAGCTGGGCTCTCCCCTGGGAAACCCCCCAGGAAGGAAGGAATTTATGTCCCAAG GGAACAAGATGCTGCTGACCTTTCACACAGATTTCTCCAACGAGGAGAATGGTACCATCA TGTTTTACAAGGGCTTCCTCGCCTACTACCAAGCTGTGGACCTGGATGAATGTGCTTTTC AGCACAACTCAGGGGAGGACAATGCCCAGCAGCCCCGGTGCCAGCACCTGTGTCACAACT ACATCGGCGGCTATTTCTGCTCCTGCCACCTAGGCTATGAGCTTCAGGAGGATGGGCATT CCTGCCAGGCCGAGTGCAGCAGGGAGCTGTTCACAGAGCCTTCAGGCTACATCTCCAGCC TGGAGTACCCCCAGCCCTACCCCCCCGACCTGCGCTGCAACTACAGCATCCGGGTGGAGC GGGGTCTCACCATCCACCTCAAGTTCCTGGAACCCTTCGAAATCGATGACCACCAGCAAG TACACTGTCCCTACGACCAGCTACAGATCTATGCCAGCGGGAGGAACATCGGGGAGTTCT GTGGGAGTCAGAGGCCGGCGCCCATTGACACCAACAGCAACGCCGTGGATCTGCTCTTCT TCACAGACGAGTCAGGGGACAGCCGGGGCTGGAAGCTGCACTACACCACGGAAATCATCA AGTGCCCCCAGCCCAAGACTCTAGACACATTCACCGTCATCCAGGACCTGCAGCCTCAGT ACGAGTTCCGGGACTATTTCATCGCCTCCTGCAAACAAGGCTACCAGCTCATGGAGGGGA AGCAGGTGCTACTGTCCTTCACAGCTGTCTGCCAGGATGATGGCACGTGGCATCGCGCCA TGCCCAGGTGCAAGATCAAGGACTGTGGGCGGCCCAAAAGCCTGCCCAATGGGGACTTCA ATTACATCACCACAAAGGGGGTGAACACCTACCAGGCCCGTATCCAGTACTACTGCCGAG AGCCGTATTACAAGATGCACACCGGAGGGGGCAGCAGCAAGTCTGAGCGAGGGGCGTATA CCTGCTCAGCCCAGGGCGTTTGGATGAATGAGCTGGAAGGAGAGACGATGCCTCGGTGTT TGCCAGTGTGCGGGAAACCGGTCAACCCTGTGGAAGAGAAGCAGCGCATCATCGGAGGCA GGAAGGCCAAGCCGGGCAGTTTCCCCTGGCAGGCCTTCACCAACATCTACGGGCACGGGG GCGGCGCGCTGCTGGGCGACCGCTGGATCCTCACGGCCGCGCACACGCTCAAGCCCAAGG AGTACGATGAGCAGAACAACGCCTCCGTGGACGTGTTCCTGGGCCACGTGAACGTGGACG AGATCACCAAGCTGGGCAACCACCCGGTGCGCCGGTTCATCATCCACCCAGACTACCGTC AGGAAGACAGCCACAGCTTCGAGGGGGACATCGCCCTCCTGGAGCTGGAAAACAGCGTCA CCCTGGGCCCCGACATCCTCCCTATCTGCCTCCCCGACAACGACACCTTCTACGACTGGG GCTTCATGGGCTACGTCAGTGGCTTTGGGATAACAGAGAGGAAACTGTCTCATGACCTCA GGTATGTCCATCTGCCCATAGCGAAACGAGAGATGTGCCAGAGCTGGCTCCAGAAAAAAA ATAGGAACGATGTGTTTTCGCGGAACATGTTCTGTGCTGGGTCCCCGACTCTAAAGCAGG ATTCCTGCCAGGGGGACAGTGGAGGGGTCTTTGCAATGAAGGATGAGAAAAATGACCAGT GGGTGGCCATGGGCATTGTGTCCTGGGGCATCGGCTGTGGCGAGGGCTACGGCTTCTACA CCAAAGTGCTCAACTACGTCGACTGGATCAAAAAGGAGATGGAGAAGGCGGGCTGAACCC AGAACTCGCTAGGTCAGAATCCAGAGAGTAGAGTGTTTAATAAAAAATTATCTGACCAGT TGTTGGTAACCACTAAGAATCCATATTAAAAATCACTGATGCAGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCTTCTCTCCTCTGCATGACTGCGCTCTCCCTGGACACAGAGTGGATGAAGCCGCTGC AGGAGAACCAGGGATCCCCAGAGAGGCCTTGAGAAATGTGGCTCGTATACCTCCTGGTGC CAGGCCTGTTCTACAGCTTGGGGGGCACCACGCCCCTCCCTCAGAAGCTCTTTGGGGAGG TGACATCCCCTCGGTACCCCAAGCCTTACCCCAACAACTTTGAGACAACCACTGTCATCA CAGTCCCCACGGGATACAGGGTGAAGCTGGTCTTCTGGCAGTTTGACCTGGAGCCTTCGG AAGGCTGTTTCTATGACTATGTCAAGATCTCTGCGGATAAGAAAACGCTGGGGAGGTTCT GCGGGCAGCTGGGCTCTCCCCTGGGAAACCCCCCAGGAAGGAAGGAATTTATGTCCCAAG GGAACAAGATGCTGCTGACCTTTCACACAGATTTCTCCAACGAGGAGAATGGTACCATCA TGTTTTACAAGGGCTTCCTCGCCTACTACCAAGCTGTGGACCTGGATGAATGTGCTTTTC AGCACAACTCAGGGGAGGACAATGCCCAGCAGCCCCGGTGCCAGCACCTGTGTCACAACT ACATCGGCGGCTATTTCTGCTCCTGCCACCTAGGCTATGAGCTTCAGGAGGATGGGCATT CCTGCCAGGCCGAGTGCAGCAGGGAGCTGTTCACAGAGCCTTCAGGCTACATCTCCAGCC TGGAGTACCCCCAGCCCTACCCCCCCGACCTGCGCTGCAACTACAGCATCCGGGTGGAGC GGGGTCTCACCATCCACCTCAAGTTCCTGGAACCCTTCGAAATCGATGACCACCAGCAAG TACACTGTCCCTACGACCAGCTACAGATCTATGCCAGCGGGAGGAACATCGGGGAGTTCT GTGGGAGTCAGAGGCCGGCGCCCATTGACACCAACAGCAACGCCGTGGATCTGCTCTTCT TCACAGACGAGTCAGGGGACAGCCGGGGCTGGAAGCTGCACTACACCACGGAAATCATCA AGTGCCCCCAGCCCAAGACTCTAGACACATTCACCGTCATCCAGGACCTGCAGCCTCAGT ACGAGTTCCGGGACTATTTCATCGCCTCCTGCAAACAAGGCTACCAGCTCATGGAGGGGA AGCAGGTGCTACTGTCCTTCACAGCTGTCTGCCAGGATGATGGCACGTGGCATCGCGCCA TGCCCAGGTGCAAGATCAAGGACTGTGGGCGGCCCAAAAGCCTGCCCAATGGGGACTTCA ATTACATCACCACAAAGGGGGTGAACACCTACCAGGCCCGTATCCAGTACTACTGCCGAG AGCCGTATTACAAGATGCACACCGGAGGGGGCAGCAGCAAGTCTGAGCGAGGGGCGTATA CCTGCTCAGCCCAGGGCGTTTGGATGAATGAGCTGGAAGGAGAGACGATGCCTCGGTGTT TGCCAGTGTGCGGGAAACCGGTCAACCCTGTGGAAGAGAAGCAGCGCATCATCGGAGGCA GGAAGGCCAAGCCGGGCAGTTTCCCCTGGCAGGCCTTCACCAACATCTACGGGCACGGGG GCGGCGCGCTGCTGGGCGACCGCTGGATCCTCACGGCCGCGCACACGCTCAAGCCCAAGG AGTACGATGAGCAGAACAACGCCTCCGTGGACGTGTTCCTGGGCCACGTGAACGTGGACG AGATCACCAAGCTGGGCAACCACCCGGTGCGCCGGTTCATCATCCACCCAGACTACCGTC AGGAAGACAGCCACAGCTTCGAGGGGGACATCGCCCTCCTGGAGCTGGAAAACAGCGTCA CCCTGGGCCCCGACATCCTCCCTATCTGCCTCCCCGACAACGACACCTTCTACGACTGGG GCTTCATGGGCTACGTCAGTGGCTTTGGGATAACAGAGAGGAAACTGTCTCATGACCTCA GGTATGTCCATCTGCCCATAGCGAAACGAGAGATGTGCCAGAGCTGGCTCCAGAAAAAAA ATAGGAACGATGTGTTTTCGCGGAACATGTTCTGTGCTGGGTCCCCGACTCTAAAGCAGG ATTCCTGCCAGGGGGACAGTGGAGGGGTCTTTGCAATGAAGGATGAGAAAAATGACCAGT GGGTGGCCATGGGCATTGTGTCCTGGGGCATCGGCTGTGGCGAGGGCTACGGCTTCTACA CCAAAGTGCTCAACTACGTCGACTGGATCAAAAAGGAGATGGAGAAGGCGGGCTGAACCC AGAACTCGCTAGGTCAGAATCCAGAGAGTAGAGTGTTTAATAAAAAATTATCTGACCAGT TGTTGGTAACCACTAAGAATCCATATTAAAAATCACTGATGCAGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 662-2309, + strand, RNAz p=0.959774 | |
| 1956-2075, - strand, RNAz p=0.525181 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 662-2309, + strand, RNAz p=0.959774 | |
| 1956-2075, - strand, RNAz p=0.525181 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 98-326, gnl|bosTau2|chr5 (60161814-60162042) | |
| 98-326, gnl|Hg17|chr12 (7135417-7135189) | |
| 98-326, gnl|Mm7|chr6 (124596224-124596449) | |
| 662-866, gnl|bosTau2|chr5 (60164764-60164967) | |
| 662-866, gnl|Hg17|chr12 (7133233-7133030) | |
| 662-866, gnl|Mm7|chr6 (124599362-124599565) | |
| 1015-1137, gnl|bosTau2|chr5 (60165724-60165846) | |
| 1015-1137, gnl|canFam2|chr27 (40983766-40983615) | |
| 1015-1137, gnl|echTel1|scaffold_320342 (149449-149601) | |
| 1015-1137, gnl|galGal2|chr1 (71484015-71484170) | |
| 1015-1137, gnl|hg17|chr12 (7132337-7132489) | |
| 1015-1137, gnl|Hg17|chr12 (7132468-7132346) | |
| 1015-1137, gnl|loxAfr1|scaffold_29856 (10791-10943) | |
| 1015-1137, gnl|mm7|chr6 (124600239-124600094) | |
| 1015-1137, gnl|Mm7|chr6 (124600106-124600228) | |
| 1015-1137, gnl|monDom2|scaffold_31 (15606469-15606621) | |
| 1015-1137, gnl|oryCun1|scaffold_185407 (67667-67515) | |
| 1015-1137, gnl|panTro1|chr10 (7694381-7694533) | |
| 1015-1137, gnl|rheMac2|chr11 (7391092-7391244) | |
| 1015-1137, gnl|rn3|chr4 (160962371-160962219) | |
| 1015-1137, gnl|xenTro1|scaffold_811 (269644-269789) | |
| 1211-1372, gnl|bosTau2|chr5 (60168818-60168978) | |
| 1211-1372, gnl|Hg17|chr3 (188444115-188443967) | |
| 1211-1372, gnl|Mm7|chr6 (124602240-124602400) | |
| 1443-2327, gnl|bosTau2|chr5 (60170950-60171837) | |
| 1443-2327, gnl|Hg17|chr12 (7058864-7057975) | |
| 1443-2327, gnl|Mm7|chr6 (124605115-124606004) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-326, gnl|bosTau2|chr5 (60161814-60162042) | |
| 98-326, gnl|Hg17|chr12 (7135417-7135189) | |
| 98-326, gnl|Mm7|chr6 (124596224-124596449) | |
| 662-866, gnl|bosTau2|chr5 (60164764-60164967) | |
| 662-866, gnl|Hg17|chr12 (7133233-7133030) | |
| 662-866, gnl|Mm7|chr6 (124599362-124599565) | |
| 1015-1137, gnl|bosTau2|chr5 (60165724-60165846) | |
| 1015-1137, gnl|canFam2|chr27 (40983766-40983615) | |
| 1015-1137, gnl|echTel1|scaffold_320342 (149449-149601) | |
| 1015-1137, gnl|galGal2|chr1 (71484015-71484170) | |
| 1015-1137, gnl|hg17|chr12 (7132337-7132489) | |
| 1015-1137, gnl|Hg17|chr12 (7132468-7132346) | |
| 1015-1137, gnl|loxAfr1|scaffold_29856 (10791-10943) | |
| 1015-1137, gnl|mm7|chr6 (124600239-124600094) | |
| 1015-1137, gnl|Mm7|chr6 (124600106-124600228) | |
| 1015-1137, gnl|monDom2|scaffold_31 (15606469-15606621) | |
| 1015-1137, gnl|oryCun1|scaffold_185407 (67667-67515) | |
| 1015-1137, gnl|panTro1|chr10 (7694381-7694533) | |
| 1015-1137, gnl|rheMac2|chr11 (7391092-7391244) | |
| 1015-1137, gnl|rn3|chr4 (160962371-160962219) | |
| 1015-1137, gnl|xenTro1|scaffold_811 (269644-269789) | |
| 1211-1372, gnl|bosTau2|chr5 (60168818-60168978) | |
| 1211-1372, gnl|Hg17|chr3 (188444115-188443967) | |
| 1211-1372, gnl|Mm7|chr6 (124602240-124602400) | |
| 1443-2327, gnl|bosTau2|chr5 (60170950-60171837) | |
| 1443-2327, gnl|Hg17|chr12 (7058864-7057975) | |
| 1443-2327, gnl|Mm7|chr6 (124605115-124606004) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| cli (3.82029) | |
| cut (1.35939) | |
| lun (1.3544) | |
| cmu (1.30475) | |
| csp (1.1283) | |
| sto (1.07894) | |
| cag (1.05836) | |
| spl (0.859107) | |
| cga (0.837287) | |
| cje (0.826173) | |
| cly (0.723851) | |
| lnt (0.711541) | |
| csk (0.70373) | |
| fat (0.442282) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| nlu (0.383362) | |
| eep (0.367692) | |
| jca (0.34188) | |
| mga (0.32041) | |
| sme (0.305437) | |
| cst (0.280073) | |
| ute (0.265569) | |
| cbe (0.239234) | |
| jej (0.197844) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (3.82029) | |
| cut (1.35939) | |
| lun (1.3544) | |
| cmu (1.30475) | |
| csp (1.1283) | |
| sto (1.07894) | |
| cag (1.05836) | |
| spl (0.859107) | |
| cga (0.837287) | |
| cje (0.826173) | |
| cly (0.723851) | |
| lnt (0.711541) | |
| csk (0.70373) | |
| fat (0.442282) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| nlu (0.383362) | |
| eep (0.367692) | |
| jca (0.34188) | |
| mga (0.32041) | |
| sme (0.305437) | |
| cst (0.280073) | |
| ute (0.265569) | |
| cbe (0.239234) | |
| jej (0.197844) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) |