Ss1.1-Liv1-LVR010014A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCTCATTCTTGAAACTGAATCTGAAGTTGAAGGCAAAGGGAAATGGCTCATTACCGTA ATGACTACAAAAAGAATGATGAGGTAGAGTTTGTCCGAACTGGCTATGGGAAGGATATGA TAAAAGTTCTCCATATTCAGCGAGATGGAAAATATCACAGCATTAAAGAGGTGGCAACTT CAGTGCAACTGACTTTGAGCTCCAAAAAAGATTACCTGCATGGAGACAATTCAGATGTCA TCCCTACAGACACCATCAAGAACACAGTTAATGTCCTGGCGAAGTTCAAAGGCATCAAAA GCATAGAAACTTTTGCTGTGACTATCTGTGAGCATTTCCTTTCTTCCTTCAAGCATGTCA TCAGAGCTCAAGTCTATGTGGAAGAAGTTCCTTGGAAGCGTTTTGAAAAGAATGGAGTTA AGCATGTCCATGCATTTATTTATACTCCTACTGGAACGCACTTCTGTGAGGTTGAACAGA TAAGGAATGGACCTCCAGTCATTCATTCTGGAATCAAAGACCTAAAAGTCTTGAAAACAA CCCAGTCTGGCTTTGAAGGATTCATCAAGGACCAGTTCACCACCCTCCCTGAGGTGAAGG ACCGGTGCTTTGCCACCCAAGTGTACTGCAAATGGCGCTACCACCAGGGCAGAGATGTGG ACTTTGAGGCCACCTGGGACACTGTTAGGAGCATTGTCCTGCAGAAATTTGCTGGGCCCT ATGACAAAGGCGAGTACTCGCCCTCTGTCCAGAAGACACTCTATGACATCCAGGTGCTCA CCCTGGGCCAGGTTCCTGAGATAGAAGATATGGAAATCAGCCTGCCAAATATTCACTACT TAAACATAGACATGTCCAAAATGGGACTGATCAACAAGGAAGAGGTCTTGCTACCTTTAG ACAATCCATATGGCAGGATTACTGGTACAGTCAAGAGGAAGCTGACTTCAAGGCTGTGAT GTTATGGCCCCCAGTGGAAGTCCGTGCTCAGTTGAGGCATTCCTTAAGCCACTTGTGATG CTGGGAATCAGTGTGTAGCCATGCAAATTGTCAACCTAGTATGTTGATTTGTAGTGTTCA TTTTCCTCCCACATGAAAGAATTCTCCTATACCTAGCTCAGCAAAGTGTCTGTGATGAGT AATTATAACCTGCTTTGTGAGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCTCATTCTTGAAACTGAATCTGAAGTTGAAGGCAAAGGGAAATGGCTCATTACCGTA ATGACTACAAAAAGAATGATGAGGTAGAGTTTGTCCGAACTGGCTATGGGAAGGATATGA TAAAAGTTCTCCATATTCAGCGAGATGGAAAATATCACAGCATTAAAGAGGTGGCAACTT CAGTGCAACTGACTTTGAGCTCCAAAAAAGATTACCTGCATGGAGACAATTCAGATGTCA TCCCTACAGACACCATCAAGAACACAGTTAATGTCCTGGCGAAGTTCAAAGGCATCAAAA GCATAGAAACTTTTGCTGTGACTATCTGTGAGCATTTCCTTTCTTCCTTCAAGCATGTCA TCAGAGCTCAAGTCTATGTGGAAGAAGTTCCTTGGAAGCGTTTTGAAAAGAATGGAGTTA AGCATGTCCATGCATTTATTTATACTCCTACTGGAACGCACTTCTGTGAGGTTGAACAGA TAAGGAATGGACCTCCAGTCATTCATTCTGGAATCAAAGACCTAAAAGTCTTGAAAACAA CCCAGTCTGGCTTTGAAGGATTCATCAAGGACCAGTTCACCACCCTCCCTGAGGTGAAGG ACCGGTGCTTTGCCACCCAAGTGTACTGCAAATGGCGCTACCACCAGGGCAGAGATGTGG ACTTTGAGGCCACCTGGGACACTGTTAGGAGCATTGTCCTGCAGAAATTTGCTGGGCCCT ATGACAAAGGCGAGTACTCGCCCTCTGTCCAGAAGACACTCTATGACATCCAGGTGCTCA CCCTGGGCCAGGTTCCTGAGATAGAAGATATGGAAATCAGCCTGCCAAATATTCACTACT TAAACATAGACATGTCCAAAATGGGACTGATCAACAAGGAAGAGGTCTTGCTACCTTTAG ACAATCCATATGGCAGGATTACTGGTACAGTCAAGAGGAAGCTGACTTCAAGGCTGTGAT GTTATGGCCCCCAGTGGAAGTCCGTGCTCAGTTGAGGCATTCCTTAAGCCACTTGTGATG CTGGGAATCAGTGTGTAGCCATGCAAATTGTCAACCTAGTATGTTGATTTGTAGTGTTCA TTTTCCTCCCACATGAAAGAATTCTCCTATACCTAGCTCAGCAAAGTGTCTGTGATGAGT AATTATAACCTGCTTTGTGAGTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 73-191, + strand, RNAz p=0.750022 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 73-191, + strand, RNAz p=0.750022 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 73-293, gnl|bosTau2|chr3 (45232159-45232379) | |
| 73-293, gnl|Hg17|chr1 (84562517-84562297) | |
| 73-293, gnl|Mm7|chr3 (146508827-146509047) | |
| 294-410, gnl|bosTau2|chr3 (45234250-45234366) | |
| 294-410, gnl|canFam2|chr6 (66554303-66554120) | |
| 294-410, gnl|danRer3|chr14 (57323820-57323628) | |
| 294-410, gnl|dasNov1|scaffold_33917 (2139-2320) | |
| 294-410, gnl|echTel1|scaffold_325074 (74784-74602) | |
| 294-410, gnl|fr1|chrUn (23478608-23478831) | |
| 294-410, gnl|hg17|chr1 (84559601-84559785) | |
| 294-410, gnl|Hg17|chr1 (84559812-84559696) | |
| 294-410, gnl|loxAfr1|scaffold_21819 (29431-29602) | |
| 294-410, gnl|mm7|chr3 (146511049-146510871) | |
| 294-410, gnl|Mm7|chr3 (146510842-146510958) | |
| 294-410, gnl|monDom2|scaffold_16 (3247760-3247551) | |
| 294-410, gnl|oryCun1|scaffold_200993 (46029-46211) | |
| 294-410, gnl|panTro1|chr1 (83229543-83229727) | |
| 294-410, gnl|rheMac2|chr1 (87175281-87175465) | |
| 294-410, gnl|rn3|chr2 (244798925-244798747) | |
| 294-410, gnl|tetNig1|chr1 (13083372-13083586) | |
| 294-410, gnl|xenTro1|scaffold_513 (493813-493609) | |
| 489-680, gnl|bosTau2|chr3 (45246660-45246851) | |
| 489-680, gnl|Hg17|chr1 (84549933-84549742) | |
| 489-680, gnl|Mm7|chr3 (146523022-146523217) | |
| 883-1164, gnl|bosTau2|chr3 (45253771-45254056) | |
| 883-1164, gnl|canFam2|chr6 (66572357-66571945) | |
| 883-1164, gnl|canFam2|chr6 (66572357-66571937) | |
| 883-1164, gnl|dasNov1|scaffold_74145 (14-405) | |
| 883-1164, gnl|dasNov1|scaffold_74145 (14-413) | |
| 883-1164, gnl|echTel1|scaffold_325074 (99841-99448) | |
| 883-1164, gnl|echTel1|scaffold_325074 (99841-99440) | |
| 883-1164, gnl|hg17|chr1 (84542707-84543122) | |
| 883-1164, gnl|Hg17|chr1 (84543201-84542903) | |
| 883-1164, gnl|hg17|chr19 (42231005-42231435) | |
| 883-1164, gnl|mm7|chr3 (146529560-146529171) | |
| 883-1164, gnl|Mm7|chr3 (146529090-146529367) | |
| 883-1164, gnl|monDom2|scaffold_16 (3280434-3280010) | |
| 883-1164, gnl|panTro1|chr1 (83212579-83212994) | |
| 883-1164, gnl|panTro1|chr20_random (16004128-16003698) | |
| 883-1164, gnl|rheMac2|chr1 (87158636-87159046) | |
| 883-1164, gnl|rheMac2|chr1 (87158636-87159059) | |
| 883-1164, gnl|rn3|chr2 (244818849-244818481) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-293, gnl|bosTau2|chr3 (45232159-45232379) | |
| 73-293, gnl|Hg17|chr1 (84562517-84562297) | |
| 73-293, gnl|Mm7|chr3 (146508827-146509047) | |
| 294-410, gnl|bosTau2|chr3 (45234250-45234366) | |
| 294-410, gnl|canFam2|chr6 (66554303-66554120) | |
| 294-410, gnl|danRer3|chr14 (57323820-57323628) | |
| 294-410, gnl|dasNov1|scaffold_33917 (2139-2320) | |
| 294-410, gnl|echTel1|scaffold_325074 (74784-74602) | |
| 294-410, gnl|fr1|chrUn (23478608-23478831) | |
| 294-410, gnl|hg17|chr1 (84559601-84559785) | |
| 294-410, gnl|Hg17|chr1 (84559812-84559696) | |
| 294-410, gnl|loxAfr1|scaffold_21819 (29431-29602) | |
| 294-410, gnl|mm7|chr3 (146511049-146510871) | |
| 294-410, gnl|Mm7|chr3 (146510842-146510958) | |
| 294-410, gnl|monDom2|scaffold_16 (3247760-3247551) | |
| 294-410, gnl|oryCun1|scaffold_200993 (46029-46211) | |
| 294-410, gnl|panTro1|chr1 (83229543-83229727) | |
| 294-410, gnl|rheMac2|chr1 (87175281-87175465) | |
| 294-410, gnl|rn3|chr2 (244798925-244798747) | |
| 294-410, gnl|tetNig1|chr1 (13083372-13083586) | |
| 294-410, gnl|xenTro1|scaffold_513 (493813-493609) | |
| 489-680, gnl|bosTau2|chr3 (45246660-45246851) | |
| 489-680, gnl|Hg17|chr1 (84549933-84549742) | |
| 489-680, gnl|Mm7|chr3 (146523022-146523217) | |
| 883-1164, gnl|bosTau2|chr3 (45253771-45254056) | |
| 883-1164, gnl|canFam2|chr6 (66572357-66571945) | |
| 883-1164, gnl|canFam2|chr6 (66572357-66571937) | |
| 883-1164, gnl|dasNov1|scaffold_74145 (14-405) | |
| 883-1164, gnl|dasNov1|scaffold_74145 (14-413) | |
| 883-1164, gnl|echTel1|scaffold_325074 (99841-99448) | |
| 883-1164, gnl|echTel1|scaffold_325074 (99841-99440) | |
| 883-1164, gnl|hg17|chr1 (84542707-84543122) | |
| 883-1164, gnl|Hg17|chr1 (84543201-84542903) | |
| 883-1164, gnl|hg17|chr19 (42231005-42231435) | |
| 883-1164, gnl|mm7|chr3 (146529560-146529171) | |
| 883-1164, gnl|Mm7|chr3 (146529090-146529367) | |
| 883-1164, gnl|monDom2|scaffold_16 (3280434-3280010) | |
| 883-1164, gnl|panTro1|chr1 (83212579-83212994) | |
| 883-1164, gnl|panTro1|chr20_random (16004128-16003698) | |
| 883-1164, gnl|rheMac2|chr1 (87158636-87159046) | |
| 883-1164, gnl|rheMac2|chr1 (87158636-87159059) | |
| 883-1164, gnl|rn3|chr2 (244818849-244818481) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.05342) | |
| liv (0.146284) |