Non-Coding RNA Search

Ss1.1-Liv1-LVR010014D09.5

Sequence:


               
               CAGCTCTCCCTGTGCGAGGCACCTGCCAGCCCTCTGCAGCTGCCTGGAGGCAACGTCACC
ATCACCTACAGCTATGCTGGGGCCAGAGCACCCATGGGCCAGGGCTTCCTGCTCTCCTAC
AGCCAAGATTGGCTGATGTGCCTGCAGGAAGAGTTCCAGTGCCTGAACCACCGCTGTGTG
CCCTTAGCCCAGCGCTGCGATGGGTTTGATGCCTGTGGCGATGGCTCTGATGAGGCAGGT
TGCAGCTCAGATCCCTTCCCTGAACTGACCCCAGTCCCTGTCCCCACCCCACCCTGCAAT
CACACCCTGGAAGACTTCTATGGGGTCTTCTCTTCCCTTGGATACTCACACCTGGCCTCA
GTCTCCCACCCCCAGTCCTGCCTCTGGCTGCTGGACCCCCATGATGGCCGGCGCCTGGCA
GTGCGATTCACAGCCCTGGACCTGGGCTATGGAGATGCCGTGCATGTGTATGATGGCACG
GGGCCCCCCGAGACCCTCCGGCTGCTGCGCAGCCTCACCCACTTCAGCAATGGCAAGGCT
GTCACTGTGGAGACACTGTCTGGCCAGGCCACCGTGGACTACCACACAGTCGCCTGGAGC
AGTGGTCGGGGCTTCAATGCCACCTACCACGTGCGGGGCTACTGCTTGCCTTGGGACCGA
CCATGTGGCTTAGGCTCTGGCTTGGGGGCTAGTGAGGGCCTGGGCGAGCGCTGCTACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCTCCCTGTGCGAGGCACCTGCCAGCCCTCTGCAGCTGCCTGGAGGCAACGTCACC
ATCACCTACAGCTATGCTGGGGCCAGAGCACCCATGGGCCAGGGCTTCCTGCTCTCCTAC
AGCCAAGATTGGCTGATGTGCCTGCAGGAAGAGTTCCAGTGCCTGAACCACCGCTGTGTG
CCCTTAGCCCAGCGCTGCGATGGGTTTGATGCCTGTGGCGATGGCTCTGATGAGGCAGGT
TGCAGCTCAGATCCCTTCCCTGAACTGACCCCAGTCCCTGTCCCCACCCCACCCTGCAAT
CACACCCTGGAAGACTTCTATGGGGTCTTCTCTTCCCTTGGATACTCACACCTGGCCTCA
GTCTCCCACCCCCAGTCCTGCCTCTGGCTGCTGGACCCCCATGATGGCCGGCGCCTGGCA
GTGCGATTCACAGCCCTGGACCTGGGCTATGGAGATGCCGTGCATGTGTATGATGGCACG
GGGCCCCCCGAGACCCTCCGGCTGCTGCGCAGCCTCACCCACTTCAGCAATGGCAAGGCT
GTCACTGTGGAGACACTGTCTGGCCAGGCCACCGTGGACTACCACACAGTCGCCTGGAGC
AGTGGTCGGGGCTTCAATGCCACCTACCACGTGCGGGGCTACTGCTTGCCTTGGGACCGA
CCATGTGGCTTAGGCTCTGGCTTGGGGGCTAGTGAGGGCCTGGGCGAGCGCTGCTACAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40787709|gb|AAH64901.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40787709|gb|AAH64901.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               525-684, + strand, RNAz p=0.986074

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-684, + strand, RNAz p=0.986074

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY358399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY358399, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               126-719, gnl|bosTau2|chr10 (14143305-14142712)
               

               
               126-719, gnl|Hg17|chr14 (22414402-22414995)
               

               
               126-719, gnl|Mm7|chr14 (49335270-49335863)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-719, gnl|bosTau2|chr10 (14143305-14142712)
               

               
               126-719, gnl|Hg17|chr14 (22414402-22414995)
               

               
               126-719, gnl|Mm7|chr14 (49335270-49335863)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               nje (0.16592)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               nje (0.16592)
               

               
               clu (0.119646)

	126-719, gnl\|bosTau2\|chr10 (14143305-14142712)
	126-719, gnl\|Hg17\|chr14 (22414402-22414995)
	126-719, gnl\|Mm7\|chr14 (49335270-49335863)