Non-Coding RNA Search

Ss1.1-Liv1-LVR010015G05.5

Sequence:


               
               AATTCGTCATTTCAAATAAACAGCAGCAAACGGGGGATAATGATTTCACCACAAGAGGAT
TAGAGCCACAGGCTCTAATTGGAACTGGATTTAGACACCCAGTGAATCTCGTGAGTAGCT
GGAAGCACCTCCAGGAATCAGTGAGTAGCTGTCAAAACTTCTATTTCATATGCCATTGAA
GTAGGGACCAGAGGCAGGTATAGCAGAAAACAGTGGTCGTTGGAGAAGACCCAAGATGCA
GCCTGAGATGGAACAAAAGAAAAAAAGCTTGAAGCAGAGACTGGTCTTGAAGAACAGCTT
AGCTAAAGAAATGCTCTCCGAGTTCTTGGGCACGTTTATAATGATTGTTCTTGGATGTGG
CTCTGTTGCCCAAGCTGTCCTCAGTCGCGGACATTTTGGAGGAATCCTCACTATCAATAT
TGGATTTCCAATGGCAGTTGTAATGGCAATTTATGCGACTGGAGGTGTCTCTGGTGGCCA
CATCAACCCAGCCGTGTCTTTTGCCTTGTGTCTTTTTGGACGGATGAAGTGGTCCAAATT
GCCCTTTTATATGGGGGCCCAGTTCTTGGGAGCCTTTGCAGGGGCTGCAACCCTCTTTGG
CATTTACTATGATGCACTTATGTCTTTTGCTGATGGAAAACTGCTCATCACAGGAGAAAA
CGCAACAGCACAGATTTTTGCAACATACCCAGCTCCATATTTGTCTCTGATAAATGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCGTCATTTCAAATAAACAGCAGCAAACGGGGGATAATGATTTCACCACAAGAGGAT
TAGAGCCACAGGCTCTAATTGGAACTGGATTTAGACACCCAGTGAATCTCGTGAGTAGCT
GGAAGCACCTCCAGGAATCAGTGAGTAGCTGTCAAAACTTCTATTTCATATGCCATTGAA
GTAGGGACCAGAGGCAGGTATAGCAGAAAACAGTGGTCGTTGGAGAAGACCCAAGATGCA
GCCTGAGATGGAACAAAAGAAAAAAAGCTTGAAGCAGAGACTGGTCTTGAAGAACAGCTT
AGCTAAAGAAATGCTCTCCGAGTTCTTGGGCACGTTTATAATGATTGTTCTTGGATGTGG
CTCTGTTGCCCAAGCTGTCCTCAGTCGCGGACATTTTGGAGGAATCCTCACTATCAATAT
TGGATTTCCAATGGCAGTTGTAATGGCAATTTATGCGACTGGAGGTGTCTCTGGTGGCCA
CATCAACCCAGCCGTGTCTTTTGCCTTGTGTCTTTTTGGACGGATGAAGTGGTCCAAATT
GCCCTTTTATATGGGGGCCCAGTTCTTGGGAGCCTTTGCAGGGGCTGCAACCCTCTTTGG
CATTTACTATGATGCACTTATGTCTTTTGCTGATGGAAAACTGCTCATCACAGGAGAAAA
CGCAACAGCACAGATTTTTGCAACATACCCAGCTCCATATTTGTCTCTGATAAATGCATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R1T7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R1T7_MOUSE

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               126-348, gnl|bosTau2|chr10 (34138271-34138050)
               

               
               126-348, gnl|canFam2|chr30 (26215925-26216634)
               

               
               126-348, gnl|echTel1|scaffold_287432 (40513-41215)
               

               
               126-348, gnl|hg17|chr15 (56217809-56218541)
               

               
               126-348, gnl|Hg17|chr15 (56217942-56218169)
               

               
               126-348, gnl|loxAfr1|scaffold_6061 (55358-56070)
               

               
               126-348, gnl|mm7|chr9 (71197740-71197019)
               

               
               126-348, gnl|Mm7|chr9 (71197607-71197334)
               

               
               126-348, gnl|monDom2|scaffold_12 (36122860-36123627)
               

               
               126-348, gnl|oryCun1|scaffold_215073 (24960-24235)
               

               
               126-348, gnl|panTro1|chr16 (56629962-56630694)
               

               
               126-348, gnl|rheMac2|chr7 (36473269-36474002)
               

               
               126-348, gnl|rn3|chr8 (75665493-75664742)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-348, gnl|bosTau2|chr10 (34138271-34138050)
               

               
               126-348, gnl|canFam2|chr30 (26215925-26216634)
               

               
               126-348, gnl|echTel1|scaffold_287432 (40513-41215)
               

               
               126-348, gnl|hg17|chr15 (56217809-56218541)
               

               
               126-348, gnl|Hg17|chr15 (56217942-56218169)
               

               
               126-348, gnl|loxAfr1|scaffold_6061 (55358-56070)
               

               
               126-348, gnl|mm7|chr9 (71197740-71197019)
               

               
               126-348, gnl|Mm7|chr9 (71197607-71197334)
               

               
               126-348, gnl|monDom2|scaffold_12 (36122860-36123627)
               

               
               126-348, gnl|oryCun1|scaffold_215073 (24960-24235)
               

               
               126-348, gnl|panTro1|chr16 (56629962-56630694)
               

               
               126-348, gnl|rheMac2|chr7 (36473269-36474002)
               

               
               126-348, gnl|rn3|chr8 (75665493-75664742)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	126-348, gnl\|bosTau2\|chr10 (34138271-34138050)
	126-348, gnl\|canFam2\|chr30 (26215925-26216634)
	126-348, gnl\|echTel1\|scaffold_287432 (40513-41215)
	126-348, gnl\|hg17\|chr15 (56217809-56218541)
	126-348, gnl\|Hg17\|chr15 (56217942-56218169)
	126-348, gnl\|loxAfr1\|scaffold_6061 (55358-56070)
	126-348, gnl\|mm7\|chr9 (71197740-71197019)
	126-348, gnl\|Mm7\|chr9 (71197607-71197334)
	126-348, gnl\|monDom2\|scaffold_12 (36122860-36123627)
	126-348, gnl\|oryCun1\|scaffold_215073 (24960-24235)
	126-348, gnl\|panTro1\|chr16 (56629962-56630694)
	126-348, gnl\|rheMac2\|chr7 (36473269-36474002)
	126-348, gnl\|rn3\|chr8 (75665493-75664742)