Ss1.1-Liv1-LVR010015H05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGATTAAAGTAGACCTAGCTAATTGTTCACTTTATGAGTCAGAGAGTCAGAAGTTAT TAGCAGGGACTGTTATAAAAAAGCTTTAGATTTCAGGCTCCCAGTTGTCTAAGTAAGAAG AGAGGGCATCATGGATGGGGCTGTGGTCCTGGTGCTCTGTCTCTCCTGTCTGCTTCTCCT CTCACTCTGGAAACAGAACTCTGGGAAGGGGAGGCTCCCGCCTGGCCCGACTCCTCTCTC AATTCTTGGAAATATCCTACAGTTAGATGTTAAGGACATCAGCAAATCCTTAAGCAACCT CTCAAAAGTCTATGGCCCTGTATTCACCGTGTATTTTGGCTTGAAGCCTGCTGTTGTGTT GCATGGCTATGAAGCAGTAAAAGAAGCCCTAATTGATGGGGGAGAGGAATTTTCTGGAAG GGGCCATTTCCCAATGGCTGAGAGAGTTAATAAAGGGCATGGAATCATCTTCAGCAGTGG AAAGAGATGGAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGAATTTTGGGATGGG GAAGAGAAGCATTGAGGAACGGGTTCAAGAGGAAGCCCGCTGCCTTGTGGAGGAGTTGAG AAAAACCAATGCTTCACCCTGTGATCCCACTTTCCTCCTGGGCTGTGCTCCCTGCAATGT GATCTGCTCCATCATTTTCCACAATCGTTTTGATTATACAGATCCAAATTTTCTTACCTT GTTGGAAAAACTAAATGAAAACTTCAGGATTCTGAGCTCCCCGTGGATCCAGGTCTGCAA TAATTTCCCTGCTCTGATTGACTATCTCCCAGGGAGTCATAACAAAGTGCTTAAAAATTC TGCTTATGTAAAAAGCTATATTTTGGAGAAAGTAAAAGAACATCAAGCATCCCTGGATGT TAAGGACCCTCGGGACTTCATTGATTGTTTCCTGATCAAGATGGAACAGGAAAAACACAA TCACCAGGTGGCATTTACTTTTGAAAACTTGATAGCCACTATATCTGACTTGTTTGGAGC TGGGACAGAGACAACAAGCACCACCCTGAGATATGGGCTCCTCCTGCTGCTGAAGCACCC AGATGTCACAGCCAAAGTGCAGAAAGAGATTGACTCCGTGATTGAGAGACACCGAAGTCC TTGCATGCAGGACAGAAGCCGCATGCCCTACACAGATGCCGTGGTGCATGAGATCCAGAG ATACATTGACCTGGTCCCCATCAGCGTGCCTCACGCAGTGACCAGGGACATTAAATTCAG AAACTACCTCATCCCCAAGGGCACAACTGTGTTAACATCACTGACGTCTGTGCTGCGTGA TGACCAAGAATTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTCCTGGATGAGAGTGG CAACTTTAAGAAGAGTGACTGCTTCATGCCTTTCTCAACAGGAAAACGAATTTGTGTGGG AGAAGGCCTGGCCCGCATGGAGCTATTTTTATTCCTGACTAGCATTTTACAGAAATTTAC CCTGGAACCTGTGGTTGACCTAAAGGACATCGACACCACCCCCATTTTAAGTGGGTTCAG CCATATGCCACCCTCATACCAGCTCCGCTTCATTCCTGTATAATGAAGAGCAGACCCTGC GGCTGCTGCGATGCTGTTCTCTGTAACTCGTCCTCTTCTGGGCTTTGTTCACCCCTTTCT CATTACCAGGGATGCTCTCTTTGACCTCCCATCTCGTATCTCCACATTCCCTCAATATCC AGCTAATATCCAACCTCTATTAAAAGTTTCCCAAGTTTTACTGCACAAATGTATGTGCTA TCTTTATGCTCTGTAACACTCAAATTGGCTATCACATGTGTTCATTGCTACCTAATATTG AGTTAGTACTGTGTTATCACTGTGAAACGGTAGAGAGATTAATTTAAGCCAGTATGTAGC TGTTTGTCCTCTGCATTTCTAAATAAAAAGCATCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGATTAAAGTAGACCTAGCTAATTGTTCACTTTATGAGTCAGAGAGTCAGAAGTTAT TAGCAGGGACTGTTATAAAAAAGCTTTAGATTTCAGGCTCCCAGTTGTCTAAGTAAGAAG AGAGGGCATCATGGATGGGGCTGTGGTCCTGGTGCTCTGTCTCTCCTGTCTGCTTCTCCT CTCACTCTGGAAACAGAACTCTGGGAAGGGGAGGCTCCCGCCTGGCCCGACTCCTCTCTC AATTCTTGGAAATATCCTACAGTTAGATGTTAAGGACATCAGCAAATCCTTAAGCAACCT CTCAAAAGTCTATGGCCCTGTATTCACCGTGTATTTTGGCTTGAAGCCTGCTGTTGTGTT GCATGGCTATGAAGCAGTAAAAGAAGCCCTAATTGATGGGGGAGAGGAATTTTCTGGAAG GGGCCATTTCCCAATGGCTGAGAGAGTTAATAAAGGGCATGGAATCATCTTCAGCAGTGG AAAGAGATGGAAGGAGACCCGGCGCTTCTCCCTCATGACCCTGCGGAATTTTGGGATGGG GAAGAGAAGCATTGAGGAACGGGTTCAAGAGGAAGCCCGCTGCCTTGTGGAGGAGTTGAG AAAAACCAATGCTTCACCCTGTGATCCCACTTTCCTCCTGGGCTGTGCTCCCTGCAATGT GATCTGCTCCATCATTTTCCACAATCGTTTTGATTATACAGATCCAAATTTTCTTACCTT GTTGGAAAAACTAAATGAAAACTTCAGGATTCTGAGCTCCCCGTGGATCCAGGTCTGCAA TAATTTCCCTGCTCTGATTGACTATCTCCCAGGGAGTCATAACAAAGTGCTTAAAAATTC TGCTTATGTAAAAAGCTATATTTTGGAGAAAGTAAAAGAACATCAAGCATCCCTGGATGT TAAGGACCCTCGGGACTTCATTGATTGTTTCCTGATCAAGATGGAACAGGAAAAACACAA TCACCAGGTGGCATTTACTTTTGAAAACTTGATAGCCACTATATCTGACTTGTTTGGAGC TGGGACAGAGACAACAAGCACCACCCTGAGATATGGGCTCCTCCTGCTGCTGAAGCACCC AGATGTCACAGCCAAAGTGCAGAAAGAGATTGACTCCGTGATTGAGAGACACCGAAGTCC TTGCATGCAGGACAGAAGCCGCATGCCCTACACAGATGCCGTGGTGCATGAGATCCAGAG ATACATTGACCTGGTCCCCATCAGCGTGCCTCACGCAGTGACCAGGGACATTAAATTCAG AAACTACCTCATCCCCAAGGGCACAACTGTGTTAACATCACTGACGTCTGTGCTGCGTGA TGACCAAGAATTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTCCTGGATGAGAGTGG CAACTTTAAGAAGAGTGACTGCTTCATGCCTTTCTCAACAGGAAAACGAATTTGTGTGGG AGAAGGCCTGGCCCGCATGGAGCTATTTTTATTCCTGACTAGCATTTTACAGAAATTTAC CCTGGAACCTGTGGTTGACCTAAAGGACATCGACACCACCCCCATTTTAAGTGGGTTCAG CCATATGCCACCCTCATACCAGCTCCGCTTCATTCCTGTATAATGAAGAGCAGACCCTGC GGCTGCTGCGATGCTGTTCTCTGTAACTCGTCCTCTTCTGGGCTTTGTTCACCCCTTTCT CATTACCAGGGATGCTCTCTTTGACCTCCCATCTCGTATCTCCACATTCCCTCAATATCC AGCTAATATCCAACCTCTATTAAAAGTTTCCCAAGTTTTACTGCACAAATGTATGTGCTA TCTTTATGCTCTGTAACACTCAAATTGGCTATCACATGTGTTCATTGCTACCTAATATTG AGTTAGTACTGTGTTATCACTGTGAAACGGTAGAGAGATTAATTTAAGCCAGTATGTAGC TGTTTGTCCTCTGCATTTCTAAATAAAAAGCATCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 119-237, - strand, RNAz p=0.654069 | |
| 191-297, - strand, RNAz p=0.985571 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 119-237, - strand, RNAz p=0.654069 | |
| 191-297, - strand, RNAz p=0.985571 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 2-297, gnl|bosTau2|chr26 (9096741-9096445) | |
| 2-297, gnl|canFam2|chr28 (11747836-11748121) | |
| 2-297, gnl|dasNov1|scaffold_7959 (116198-115903) | |
| 2-297, gnl|echTel1|scaffold_293186 (1065-768) | |
| 2-297, gnl|hg17|chr10 (96622593-96622890) | |
| 2-297, gnl|Hg17|chr10 (96433440-96433733) | |
| 2-297, gnl|loxAfr1|scaffold_196 (182198-182557) | |
| 2-297, gnl|mm7|chr19 (38771894-38771613) | |
| 2-297, gnl|Mm7|chr19 (38830482-38830771) | |
| 2-297, gnl|monDom2|scaffold_41 (8765447-8765739) | |
| 2-297, gnl|oryCun1|scaffold_142989 (6009-6303) | |
| 2-297, gnl|panTro1|chr8 (98254327-98254624) | |
| 2-297, gnl|rheMac2|chr9 (94376816-94376525) | |
| 2-297, gnl|rn3|chr1 (243378148-243377892) | |
| 299-462, gnl|bosTau2|chr23 (5282355-5282192) | |
| 299-462, gnl|Hg17|chr10 (96437517-96437680) | |
| 299-462, gnl|Mm7|chr19 (39010476-39010639) | |
| 768-955, gnl|bosTau2|chr26 (9085826-9085639) | |
| 768-955, gnl|Hg17|chr10 (96456526-96456713) | |
| 768-955, gnl|Mm7|chr19 (38842661-38842848) | |
| 1089-1280, gnl|bosTau2|chr18 (45943295-45943104) | |
| 1089-1280, gnl|Hg17|chr19 (46250212-46250021) | |
| 1089-1280, gnl|Mm7|chr7 (23716292-23716483) | |
| 1410-1886, gnl|bosTau2|chr21 (30264119-30263644) | |
| 1410-1886, gnl|Hg17|chr10 (96484998-96485477) | |
| 1410-1886, gnl|Mm7|chr19 (39284898-39284464) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-297, gnl|bosTau2|chr26 (9096741-9096445) | |
| 2-297, gnl|canFam2|chr28 (11747836-11748121) | |
| 2-297, gnl|dasNov1|scaffold_7959 (116198-115903) | |
| 2-297, gnl|echTel1|scaffold_293186 (1065-768) | |
| 2-297, gnl|hg17|chr10 (96622593-96622890) | |
| 2-297, gnl|Hg17|chr10 (96433440-96433733) | |
| 2-297, gnl|loxAfr1|scaffold_196 (182198-182557) | |
| 2-297, gnl|mm7|chr19 (38771894-38771613) | |
| 2-297, gnl|Mm7|chr19 (38830482-38830771) | |
| 2-297, gnl|monDom2|scaffold_41 (8765447-8765739) | |
| 2-297, gnl|oryCun1|scaffold_142989 (6009-6303) | |
| 2-297, gnl|panTro1|chr8 (98254327-98254624) | |
| 2-297, gnl|rheMac2|chr9 (94376816-94376525) | |
| 2-297, gnl|rn3|chr1 (243378148-243377892) | |
| 299-462, gnl|bosTau2|chr23 (5282355-5282192) | |
| 299-462, gnl|Hg17|chr10 (96437517-96437680) | |
| 299-462, gnl|Mm7|chr19 (39010476-39010639) | |
| 768-955, gnl|bosTau2|chr26 (9085826-9085639) | |
| 768-955, gnl|Hg17|chr10 (96456526-96456713) | |
| 768-955, gnl|Mm7|chr19 (38842661-38842848) | |
| 1089-1280, gnl|bosTau2|chr18 (45943295-45943104) | |
| 1089-1280, gnl|Hg17|chr19 (46250212-46250021) | |
| 1089-1280, gnl|Mm7|chr7 (23716292-23716483) | |
| 1410-1886, gnl|bosTau2|chr21 (30264119-30263644) | |
| 1410-1886, gnl|Hg17|chr10 (96484998-96485477) | |
| 1410-1886, gnl|Mm7|chr19 (39284898-39284464) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| lun (1.80587) | |
| cli (1.06968) | |
| duo (0.345602) | |
| sto (0.179824) | |
| nje (0.16592) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.80587) | |
| cli (1.06968) | |
| duo (0.345602) | |
| sto (0.179824) | |
| nje (0.16592) |