Non-Coding RNA Search

Ss1.1-Liv1-LVR010016B07.5

Sequence:


               
               ATTAATTTAATAATTAAAGGAGTCATTAAAGGAGTCCCTTTGTTGTGGCTTAACAGGTTA
TGAGCCTGACCTCGTATCTGTGAGGACGTGGGTTCAATCCCTGGCCTCGCTCAGTGGGTT
AGGGATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTCGCAGATGCGGCTCAGATCTGGTGT
GGCTGTGGCTGTGGTGTAGGCTGGCAGCTGTAGCTCCGATTCGACCCGTAGCCTGGGAAC
CTCCACATGCTCCAGGTGCATGGAAGACTAGAATGTAGGAAAACAAACGGGTAGAATACT
GCAATAAACACAGCGAAGCTGGACAGCACTAGGTGTGACATCTTTGAAGGCCAGCCCAAT
GATACTAAGAACAGCAGCGTCACATTTCTTTTTCAAAAAAACGAAAATAAAACCAAAAAA
CCTGTGCTCCTTAGCTTTGGATGTTCAACCGGTTAGTATTTCTTTATTCATTTTGTAAAT
TATTAAGATCTTTTCATATCTCCCCTTTCAAAGTCTTTTGAGTAAGTTAACTGTGTATTA
GCACTAACCTCTCAAAGAGGGGGTGAAATGAAAATCCGTAAGGTAACAATTTCAAGAAGA
CAGAAAAATGGTGACGTTAGTAAAGCAATGGTAGCCCTCGATGAGGAAAGCCCACTGTTT
CCTTTCAAAGCTGCTGTTTGGTTTCGTTTTGGATTCTTTGGGAGACGACAGAAATGGCTA
AGTAGGTTATAACATAAACTTTTAGGGATGAGATGCAGATTTACCTAAAAAAAAAAGGGA
GGGGGGTTCCCATCTCCTGATTAGTATTTTAACATGTAAAACCCAAACTTGTAATTATTT
GAGCCGTGCAGGTCTCAAGTCCCTGCTTGTGCTATTTCACGGCATATCCGTAGATGTGAG
GGCGCACCAGCTCCCAGGGCAGAGGGGCCTCTAAGTGCTGCAGCTTCAGTGTGGAGAAGC
TGGCCCGCTCCAGGGCCTTCCAGCTCTCTCGGCTCAGGTAGCACCCATCAAACAGAAGGT
GCCACACAGGATCCAGGACCTGTTGCCAGAAGGAAATCCAGCTTGATGGCTTTGCTGCTA
CATGCTCCATGAAATAAAAAGCTCCTCCTGGTCTCAGCACTCTGCACACTTCCTGGAGGA
CCCGATCCTGATTCTTCACGGAACACAGGACCAGGGTGCAAACCACCACATCCACGGAGC
CGTCCGCCACCTGGTGCATGTCCTCCCCGGTCGACACCACGAAGCGCTCAAACTGCAGGT
GTCGGTTCTCGGCAATGCTCTTGATCAAGAACCTCTCAAAGTTGGGGTTGGGATCAATAC
AGGCCACCCGGCATCCGGGGGGGTAGAACTTGAAGTTGGTCCCAGTGCCGCAGCCCAGCT
CCAGCAGGGAGAGCTTCCCAGAGGAGCCAGCGAACTCCTGCAGGTTGCTGAAGAGCTCCC
GCTTCTTGCTCGCCATGTCTCTGTTGTACATCACACTGAACCTCACCAAGAAGTAGGGAA
ACCATTTTTTGCACATCCAGCTCCACACGCCCAGAAAGTCCAGCAGGTACATGGGAAATG
CCAGGATGCGGAGGGCTAGCTGGAGGACAAAGATGGTAAGCGCCATCCCTCTGAAGAGAA
ATAAGCAGGTCAGTGGTTGTAGACCTGACTCCTTTAATTGCAGGAAGTAGGCTTCTGGCC
ACACTCCAGAGCCAATCAGCCGCTGAGGAAAGAAGAACTGGTCGTGCTGGAAAGACGCAG
CCGAAAACAAATCTTGGACAAAAGGCCTGTTTCGCCTAATTAATAGATATTTGGCCAAAG
GTGCCTCATAGCTTACGTTTCATGAAGCCAAATGAGTTTCCCAGCCTTTCCTTAGAAGGA
AAGCTGATTGCGATCTCTTATAAATCGATTCCTACTTGGAAACCGCTGCTTAGTTTCCTG
CTGGAGTTTTAAATGCGCAGTGGCTTCCACCCGGCTCAGTTCTCCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAATTTAATAATTAAAGGAGTCATTAAAGGAGTCCCTTTGTTGTGGCTTAACAGGTTA
TGAGCCTGACCTCGTATCTGTGAGGACGTGGGTTCAATCCCTGGCCTCGCTCAGTGGGTT
AGGGATCTGGCGTTGCCGTGAGCTGTGGTGTAGGTCGCAGATGCGGCTCAGATCTGGTGT
GGCTGTGGCTGTGGTGTAGGCTGGCAGCTGTAGCTCCGATTCGACCCGTAGCCTGGGAAC
CTCCACATGCTCCAGGTGCATGGAAGACTAGAATGTAGGAAAACAAACGGGTAGAATACT
GCAATAAACACAGCGAAGCTGGACAGCACTAGGTGTGACATCTTTGAAGGCCAGCCCAAT
GATACTAAGAACAGCAGCGTCACATTTCTTTTTCAAAAAAACGAAAATAAAACCAAAAAA
CCTGTGCTCCTTAGCTTTGGATGTTCAACCGGTTAGTATTTCTTTATTCATTTTGTAAAT
TATTAAGATCTTTTCATATCTCCCCTTTCAAAGTCTTTTGAGTAAGTTAACTGTGTATTA
GCACTAACCTCTCAAAGAGGGGGTGAAATGAAAATCCGTAAGGTAACAATTTCAAGAAGA
CAGAAAAATGGTGACGTTAGTAAAGCAATGGTAGCCCTCGATGAGGAAAGCCCACTGTTT
CCTTTCAAAGCTGCTGTTTGGTTTCGTTTTGGATTCTTTGGGAGACGACAGAAATGGCTA
AGTAGGTTATAACATAAACTTTTAGGGATGAGATGCAGATTTACCTAAAAAAAAAAGGGA
GGGGGGTTCCCATCTCCTGATTAGTATTTTAACATGTAAAACCCAAACTTGTAATTATTT
GAGCCGTGCAGGTCTCAAGTCCCTGCTTGTGCTATTTCACGGCATATCCGTAGATGTGAG
GGCGCACCAGCTCCCAGGGCAGAGGGGCCTCTAAGTGCTGCAGCTTCAGTGTGGAGAAGC
TGGCCCGCTCCAGGGCCTTCCAGCTCTCTCGGCTCAGGTAGCACCCATCAAACAGAAGGT
GCCACACAGGATCCAGGACCTGTTGCCAGAAGGAAATCCAGCTTGATGGCTTTGCTGCTA
CATGCTCCATGAAATAAAAAGCTCCTCCTGGTCTCAGCACTCTGCACACTTCCTGGAGGA
CCCGATCCTGATTCTTCACGGAACACAGGACCAGGGTGCAAACCACCACATCCACGGAGC
CGTCCGCCACCTGGTGCATGTCCTCCCCGGTCGACACCACGAAGCGCTCAAACTGCAGGT
GTCGGTTCTCGGCAATGCTCTTGATCAAGAACCTCTCAAAGTTGGGGTTGGGATCAATAC
AGGCCACCCGGCATCCGGGGGGGTAGAACTTGAAGTTGGTCCCAGTGCCGCAGCCCAGCT
CCAGCAGGGAGAGCTTCCCAGAGGAGCCAGCGAACTCCTGCAGGTTGCTGAAGAGCTCCC
GCTTCTTGCTCGCCATGTCTCTGTTGTACATCACACTGAACCTCACCAAGAAGTAGGGAA
ACCATTTTTTGCACATCCAGCTCCACACGCCCAGAAAGTCCAGCAGGTACATGGGAAATG
CCAGGATGCGGAGGGCTAGCTGGAGGACAAAGATGGTAAGCGCCATCCCTCTGAAGAGAA
ATAAGCAGGTCAGTGGTTGTAGACCTGACTCCTTTAATTGCAGGAAGTAGGCTTCTGGCC
ACACTCCAGAGCCAATCAGCCGCTGAGGAAAGAAGAACTGGTCGTGCTGGAAAGACGCAG
CCGAAAACAAATCTTGGACAAAAGGCCTGTTTCGCCTAATTAATAGATATTTGGCCAAAG
GTGCCTCATAGCTTACGTTTCATGAAGCCAAATGAGTTTCCCAGCCTTTCCTTAGAAGGA
AAGCTGATTGCGATCTCTTATAAATCGATTCCTACTTGGAAACCGCTGCTTAGTTTCCTG
CTGGAGTTTTAAATGCGCAGTGGCTTCCACCCGGCTCAGTTCTCCAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R5Q9_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R5Q9_PONPY

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               453-1108, gnl|bosTau2|chr5 (18563218-18562558)
               

               
               453-1108, gnl|Hg17|chr12 (49611424-49609964)
               


               
               1694-1881, gnl|bosTau2|chr26 (1648438-1648628)
               

               
               1694-1881, gnl|Hg17|chr12 (49605001-49604828)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               453-1108, gnl|bosTau2|chr5 (18563218-18562558)
               

               
               453-1108, gnl|Hg17|chr12 (49611424-49609964)
               


               
               1694-1881, gnl|bosTau2|chr26 (1648438-1648628)
               

               
               1694-1881, gnl|Hg17|chr12 (49605001-49604828)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               clu (2.63221)
               

               
               nlu (0.766724)
               

               
               cty (0.31224)
               

               
               nmm (0.265604)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (2.63221)
               

               
               nlu (0.766724)
               

               
               cty (0.31224)
               

               
               nmm (0.265604)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               spc (0.113366)

	453-1108, gnl\|bosTau2\|chr5 (18563218-18562558)
	453-1108, gnl\|Hg17\|chr12 (49611424-49609964)

	1694-1881, gnl\|bosTau2\|chr26 (1648438-1648628)
	1694-1881, gnl\|Hg17\|chr12 (49605001-49604828)

	clu (2.63221)
	nlu (0.766724)
	cty (0.31224)
	nmm (0.265604)
	mas (0.210305)
	col (0.195008)
	ill (0.175593)
	fhi (0.169578)
	nje (0.16592)
	tbr (0.154178)
	cli (0.152812)
	lun (0.150489)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	cov (0.132153)
	kid (0.129735)
	sug (0.127291)
	cly (0.120642)
	spc (0.113366)