Ss1.1-Liv1-LVR010017A03.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCCGCTGCAGTGTCCCCAGTGTGTCAGGCCTCCGTCAGCTCGCCGCCTACTCCTGCC ATGGGTGTCAAGGTCCTCGCCGTGCTGGCCCTCGTGCTGACCGCGCTCTGCCTCAGCGAT GAGAAACCGGTCAGCCTGAGCTACAGATGCCCTTGCCGATTCTTTGAGAGCCACGTTGCC AGAGCCAACATCAAGCATCTCAAGATCCTCAACACTCCGAACTGTGCCCTTCAGATCGTG GCACGGCTGAAGAGCAACAATAGACAAGTGTGCATTGACCCAAAATTGAAGTGGATTCAG GAATACCTGGAGAAAGCTTTAAACAAGAGGTTCAAGATGTGAGAGGCGCAGGTTGGGTCA GACGCCTGAGGAAACCTTACAGTAGGAGCCCAGGTCTGAAACCAGTGTTAGGAAGGGCCT AGAGCTGCCCCTTGCACCCAGGCAGGGCCAAATACATTGCCAAAGGCCTTGTCTTGCACA TTTTGCCTTACTTTCATCATTTGATTATGTAGCCAAATATATGGTGTTTATTTCTCATTT AGTTTGATTATCCAGTGTCACTGGCGACAGATAGGAACATAGACTAAGGCCATTATTTTA CTTGCTTTGTTATAATATCTTTCGCACGGAACCCTTCATCTGGCCAGAGGTTCCTGAGTT TTGTGTCTGTCTGAGCTGTGCAGGCTGGGACCCCAGAACTCCAGATTGATGGAGCCTTGC CCGCATCACCATGTCTAGGGTGGAGAGCCACTGGGAGGTGTCAGCACCAGTCAGCATGGG CAGACCCTAGTGGAGGCTGCCCTGTGCAAGGGGTGGGAGGGGGATAGGTTCCAGGGGGCC AGGCAGGAGCTTCACCCTTTCCCAGGGTGAGAGCTAGGGTCAGCCTCTCTGGTGAACAAG GCAGGGCCCCCCTGAACTGAGGCAGGCAGAAGTGTGAGGCTAGGGTAGAGTGAGATGCAG CCCTCGTCCTGAGCTCTCCTCTGCATCCCATCACGTCCTTCCCATCATTCTCTCTCTCAT CCATCGTCATGTGTATCCAAGACTGTCTCCATGATCCCGGAAAAGGACTCTCTCAAGACC AAAGCTTTACTTTAAACTGGGCACCAAGAAGCAAATCAAAATGTCTCGTGTTACCCAGTC CTGAAAACACTGTGCACATCTGTGTCTTGTTTGAAATATTGTCCGTTGTCCAATCCTTTG TTTTTGTTCAAAATCAATGTCCTTGGTGCATGCGCTGTCAGTTCCTGAGATGCAAAGGCT GAGAAGGAGGAGATGCCCCCACCCCCAGTGCCTTTGACCAGGTTTCTGTTAGAGCTGTGA TCCTTTGGCATGGAACCTTGGTCACAAAGCCATGGGGGAATCAACAGAGCCCAAGGGAAT TCAGTTTGCAGCAGTATGGACCTCCGAGGATGCAGTCCCTCAAGACTTCTATAATTATTG GTATCACAGAATTACAGAGAGTTTTGTTTTCCTGGTGTCAGCACTGTTTGGGGAATATCA AGTAAAGAATTTTCTACTTTTTTTGGGGGGGGGTTTTGAAAGCCCGATCCATAAAAGAAT CAATCCTGGATGTGAAGATTCATTCCCAATTAAAATCTAACCTCACCTTTTTCACCACTT GACAATCCCATGGCCTCTCACCTTCCACAATGGCACTATCATCCTGTGCTTCCAGGATGT CGAACAGAGCATTCCTTTTAGAAAAGGATGCACTGGTTGGGAAAGTAGCTTAAAATTAAA TCCTGACATTTAGGGTGTTTTCCCTTTCCTGAGAACAGTGGCTTTCAAACATTTTAAAAT TTTTACTTTCTGGAAAAGGTCGGCACTGGAGGGGTTTTTGCTTCTTTTGCTTTTCATTTG GTCTTATTAATACTTTTCCCCTCTGGTTAAGATTCCGGTAATTTTTTTTAAATTAAGAAA GTAGGAAAACAAAAAAAGAAAAAGAAGGGCAAAACAGGAAAATATATCCATTGACATGCA GAAAGTATATTCTAGTAAAATATACTAGGATAACTAAGTAACATGCAGAAAGTATATTCT AGTAAAATGATCTGAAATTGTAGGTGTTCTTAGATTTAGTAACCTTTGGGTTATCAGTAA CATGTGTTAAGCATTTCCATAAATATTCCTTTAAATTGGATCTTCATGGCAGACGGCAAA TCCATCAACCACAAACTCACATCCTCAAACCAGCTTTGTTATATTGAAAAAAAAAAAAAA GACTATGGAGGGACATTTATTAGTTATAAGAGATACAGAACTGGTCGCAAAACCCTCTTT TGAAATTAACCTGTCACTACAGAGCTCCTGAATTATCCATGAAATGATGGAATTTTCAGT GGAAGGGTCATTTTCCAAGTAATCGAAGATATTTTAAAATCTCAAGGAAAATTTGAAAGC ATCTTCCCCTGGAACCCATGAACCAGAGCCATTCAACCTCTTTCTCCAGTTAAATTCACA GGGCCCTAAATCTTGACCACAATTAAGGAAAGAATAATTTCTGTTTCTCCCCCTAGGGGG AAAAATAGATAAAAGGACAAACTGCAGTGAAAATGATTTGTGTGACAATTCCTCTACTAG CAATCTGCTTCTAGTGGAGACTGACCAGCTAAAGTAAATATGCATTTAAATAGTCCATTT GCAAAGGAAAAGGCTCTCCTGATCTCCCTTTGCTTTCAAAATACAAGTGCAGTGCAAGAT TTTGATTAGGGGTCACCCAGCTCTTCCTCCTGGTCCAGTGCTGCCTCTACCTGACCTTCC CTTGAGCTACCTGTAGCCCCTAGGGTGGTCCTCCACCACCAGCCTTTGCATCAGGACCCA GGCAGGGAAGACTCCAGACTGAGTCTGAATCTGTGCCTCGTGTTGTTTGCACTGTTCTTT GTCCCGCTCCGGCCAGGTGCTGAGACCCCAGCGAGGAGGCTCAGGAAGAGGCCCTTTGCT TATCTGCCTGTCCTCCAGAGGAAGGAGGGTCAGCTTTGAGCAGAGGGCCTGAGTAGCAAA AGGTTGCAGTCCCTCCTCTGTGAAGTCCAAGAACTGCCAAGCCTTTTCATTGGCTCCTTT TTGACCTCTCCCTTCTGACTATTGCCTGGCATTAGCACCATGGGATATTTGACTGCCAGT GCATTGCCTTTCCCAGGTGGTGGAGCCTTTTGTAGCTGGAAGAGAAGTGTGGGGGGGTCC TGATCCCTCTACACATCTCCCCTGCCCCATTCCAAGGGAGCCCCAGCCTGGGGACATGTT CCCTAGAAACCTTCAAGTTCCCTAAGGAGATCACTGACATTGCCAAGTTGAAAATTCCCA CACAAAACTTGTTATTCTGCAACCTCGCTGGACTCTCAGTCTCTGAGCAGTGATGGGTTC AGTGTTAAATGTGAGAAATACTGTATTTTGTATTGTTTAAATTGCATCTCCCACATAATG TGAAAATGGTCCAGGAGAAGGCAGCTTCCTGTATGCAGTGTGCTTTTTTTTTTTTTTAAC AAGTAACAACTCCTTTTGAGAAACAATTTCTACTTTGAAGTCATATCAATGAAAAAGATG TATATGCACTTATAATTTTCCTAATAAAGACATGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCCGCTGCAGTGTCCCCAGTGTGTCAGGCCTCCGTCAGCTCGCCGCCTACTCCTGCC ATGGGTGTCAAGGTCCTCGCCGTGCTGGCCCTCGTGCTGACCGCGCTCTGCCTCAGCGAT GAGAAACCGGTCAGCCTGAGCTACAGATGCCCTTGCCGATTCTTTGAGAGCCACGTTGCC AGAGCCAACATCAAGCATCTCAAGATCCTCAACACTCCGAACTGTGCCCTTCAGATCGTG GCACGGCTGAAGAGCAACAATAGACAAGTGTGCATTGACCCAAAATTGAAGTGGATTCAG GAATACCTGGAGAAAGCTTTAAACAAGAGGTTCAAGATGTGAGAGGCGCAGGTTGGGTCA GACGCCTGAGGAAACCTTACAGTAGGAGCCCAGGTCTGAAACCAGTGTTAGGAAGGGCCT AGAGCTGCCCCTTGCACCCAGGCAGGGCCAAATACATTGCCAAAGGCCTTGTCTTGCACA TTTTGCCTTACTTTCATCATTTGATTATGTAGCCAAATATATGGTGTTTATTTCTCATTT AGTTTGATTATCCAGTGTCACTGGCGACAGATAGGAACATAGACTAAGGCCATTATTTTA CTTGCTTTGTTATAATATCTTTCGCACGGAACCCTTCATCTGGCCAGAGGTTCCTGAGTT TTGTGTCTGTCTGAGCTGTGCAGGCTGGGACCCCAGAACTCCAGATTGATGGAGCCTTGC CCGCATCACCATGTCTAGGGTGGAGAGCCACTGGGAGGTGTCAGCACCAGTCAGCATGGG CAGACCCTAGTGGAGGCTGCCCTGTGCAAGGGGTGGGAGGGGGATAGGTTCCAGGGGGCC AGGCAGGAGCTTCACCCTTTCCCAGGGTGAGAGCTAGGGTCAGCCTCTCTGGTGAACAAG GCAGGGCCCCCCTGAACTGAGGCAGGCAGAAGTGTGAGGCTAGGGTAGAGTGAGATGCAG CCCTCGTCCTGAGCTCTCCTCTGCATCCCATCACGTCCTTCCCATCATTCTCTCTCTCAT CCATCGTCATGTGTATCCAAGACTGTCTCCATGATCCCGGAAAAGGACTCTCTCAAGACC AAAGCTTTACTTTAAACTGGGCACCAAGAAGCAAATCAAAATGTCTCGTGTTACCCAGTC CTGAAAACACTGTGCACATCTGTGTCTTGTTTGAAATATTGTCCGTTGTCCAATCCTTTG TTTTTGTTCAAAATCAATGTCCTTGGTGCATGCGCTGTCAGTTCCTGAGATGCAAAGGCT GAGAAGGAGGAGATGCCCCCACCCCCAGTGCCTTTGACCAGGTTTCTGTTAGAGCTGTGA TCCTTTGGCATGGAACCTTGGTCACAAAGCCATGGGGGAATCAACAGAGCCCAAGGGAAT TCAGTTTGCAGCAGTATGGACCTCCGAGGATGCAGTCCCTCAAGACTTCTATAATTATTG GTATCACAGAATTACAGAGAGTTTTGTTTTCCTGGTGTCAGCACTGTTTGGGGAATATCA AGTAAAGAATTTTCTACTTTTTTTGGGGGGGGGTTTTGAAAGCCCGATCCATAAAAGAAT CAATCCTGGATGTGAAGATTCATTCCCAATTAAAATCTAACCTCACCTTTTTCACCACTT GACAATCCCATGGCCTCTCACCTTCCACAATGGCACTATCATCCTGTGCTTCCAGGATGT CGAACAGAGCATTCCTTTTAGAAAAGGATGCACTGGTTGGGAAAGTAGCTTAAAATTAAA TCCTGACATTTAGGGTGTTTTCCCTTTCCTGAGAACAGTGGCTTTCAAACATTTTAAAAT TTTTACTTTCTGGAAAAGGTCGGCACTGGAGGGGTTTTTGCTTCTTTTGCTTTTCATTTG GTCTTATTAATACTTTTCCCCTCTGGTTAAGATTCCGGTAATTTTTTTTAAATTAAGAAA GTAGGAAAACAAAAAAAGAAAAAGAAGGGCAAAACAGGAAAATATATCCATTGACATGCA GAAAGTATATTCTAGTAAAATATACTAGGATAACTAAGTAACATGCAGAAAGTATATTCT AGTAAAATGATCTGAAATTGTAGGTGTTCTTAGATTTAGTAACCTTTGGGTTATCAGTAA CATGTGTTAAGCATTTCCATAAATATTCCTTTAAATTGGATCTTCATGGCAGACGGCAAA TCCATCAACCACAAACTCACATCCTCAAACCAGCTTTGTTATATTGAAAAAAAAAAAAAA GACTATGGAGGGACATTTATTAGTTATAAGAGATACAGAACTGGTCGCAAAACCCTCTTT TGAAATTAACCTGTCACTACAGAGCTCCTGAATTATCCATGAAATGATGGAATTTTCAGT GGAAGGGTCATTTTCCAAGTAATCGAAGATATTTTAAAATCTCAAGGAAAATTTGAAAGC ATCTTCCCCTGGAACCCATGAACCAGAGCCATTCAACCTCTTTCTCCAGTTAAATTCACA GGGCCCTAAATCTTGACCACAATTAAGGAAAGAATAATTTCTGTTTCTCCCCCTAGGGGG AAAAATAGATAAAAGGACAAACTGCAGTGAAAATGATTTGTGTGACAATTCCTCTACTAG CAATCTGCTTCTAGTGGAGACTGACCAGCTAAAGTAAATATGCATTTAAATAGTCCATTT GCAAAGGAAAAGGCTCTCCTGATCTCCCTTTGCTTTCAAAATACAAGTGCAGTGCAAGAT TTTGATTAGGGGTCACCCAGCTCTTCCTCCTGGTCCAGTGCTGCCTCTACCTGACCTTCC CTTGAGCTACCTGTAGCCCCTAGGGTGGTCCTCCACCACCAGCCTTTGCATCAGGACCCA GGCAGGGAAGACTCCAGACTGAGTCTGAATCTGTGCCTCGTGTTGTTTGCACTGTTCTTT GTCCCGCTCCGGCCAGGTGCTGAGACCCCAGCGAGGAGGCTCAGGAAGAGGCCCTTTGCT TATCTGCCTGTCCTCCAGAGGAAGGAGGGTCAGCTTTGAGCAGAGGGCCTGAGTAGCAAA AGGTTGCAGTCCCTCCTCTGTGAAGTCCAAGAACTGCCAAGCCTTTTCATTGGCTCCTTT TTGACCTCTCCCTTCTGACTATTGCCTGGCATTAGCACCATGGGATATTTGACTGCCAGT GCATTGCCTTTCCCAGGTGGTGGAGCCTTTTGTAGCTGGAAGAGAAGTGTGGGGGGGTCC TGATCCCTCTACACATCTCCCCTGCCCCATTCCAAGGGAGCCCCAGCCTGGGGACATGTT CCCTAGAAACCTTCAAGTTCCCTAAGGAGATCACTGACATTGCCAAGTTGAAAATTCCCA CACAAAACTTGTTATTCTGCAACCTCGCTGGACTCTCAGTCTCTGAGCAGTGATGGGTTC AGTGTTAAATGTGAGAAATACTGTATTTTGTATTGTTTAAATTGCATCTCCCACATAATG TGAAAATGGTCCAGGAGAAGGCAGCTTCCTGTATGCAGTGTGCTTTTTTTTTTTTTTAAC AAGTAACAACTCCTTTTGAGAAACAATTTCTACTTTGAAGTCATATCAATGAAAAAGATG TATATGCACTTATAATTTTCCTAATAAAGACATGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 401-2587, - strand, RNAz p=0.983861 | |
| 680-982, - strand, RNAz p=0.989146 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 401-2587, - strand, RNAz p=0.983861 | |
| 680-982, - strand, RNAz p=0.989146 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr28 (33664383-33664501) | |
| 1-119, gnl|dasNov1|scaffold_29784 (12223-12649) | |
| 1-119, gnl|echTel1|scaffold_297398 (47102-46688) | |
| 1-119, gnl|hg17|chr10 (44200120-44200557) | |
| 1-119, gnl|Hg17|chr10 (44200539-44200401) | |
| 1-119, gnl|loxAfr1|scaffold_1779 (133972-133521) | |
| 1-119, gnl|mm7|chr6 (117195345-117194913) | |
| 1-119, gnl|Mm7|chr6 (117194929-117195057) | |
| 1-119, gnl|monDom2|scaffold_41 (7738659-7739148) | |
| 1-119, gnl|oryCun1|scaffold_178510 (58550-58104) | |
| 1-119, gnl|panTro1|chr8 (44925461-44925898) | |
| 1-119, gnl|rheMac2|chr9 (44556976-44557401) | |
| 1-119, gnl|rn3|chr4 (153748844-153748412) | |
| 123-240, gnl|bosTau2|chr28 (33668480-33668597) | |
| 123-240, gnl|canFam2|chr28 (5894229-5894085) | |
| 123-240, gnl|echTel1|scaffold_297398 (50970-50826) | |
| 123-240, gnl|galGal2|chr6 (18194351-18194494) | |
| 123-240, gnl|hg17|chr10 (44196209-44196353) | |
| 123-240, gnl|Hg17|chr10 (44196333-44196216) | |
| 123-240, gnl|loxAfr1|scaffold_1779 (138618-138474) | |
| 123-240, gnl|mm7|chr6 (117197952-117197803) | |
| 123-240, gnl|Mm7|chr6 (117197826-117197943) | |
| 123-240, gnl|monDom2|scaffold_41 (7730412-7730553) | |
| 123-240, gnl|rheMac2|chr9 (44553044-44553188) | |
| 123-240, gnl|rn3|chr4 (153751510-153751361) | |
| 123-240, gnl|tetNig1|chr17 (4683057-4682916) | |
| 322-2011, gnl|bosTau2|chr28 (33676487-33678161) | |
| 322-2011, gnl|Hg17|chr10 (44188802-44187140) | |
| 2015-2865, gnl|bosTau2|chr28 (33678118-33678973) | |
| 2015-2865, gnl|Hg17|chr10 (44187173-44186340) | |
| 2015-2865, gnl|Mm7|chr6 (117206212-117206999) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr28 (33664383-33664501) | |
| 1-119, gnl|dasNov1|scaffold_29784 (12223-12649) | |
| 1-119, gnl|echTel1|scaffold_297398 (47102-46688) | |
| 1-119, gnl|hg17|chr10 (44200120-44200557) | |
| 1-119, gnl|Hg17|chr10 (44200539-44200401) | |
| 1-119, gnl|loxAfr1|scaffold_1779 (133972-133521) | |
| 1-119, gnl|mm7|chr6 (117195345-117194913) | |
| 1-119, gnl|Mm7|chr6 (117194929-117195057) | |
| 1-119, gnl|monDom2|scaffold_41 (7738659-7739148) | |
| 1-119, gnl|oryCun1|scaffold_178510 (58550-58104) | |
| 1-119, gnl|panTro1|chr8 (44925461-44925898) | |
| 1-119, gnl|rheMac2|chr9 (44556976-44557401) | |
| 1-119, gnl|rn3|chr4 (153748844-153748412) | |
| 123-240, gnl|bosTau2|chr28 (33668480-33668597) | |
| 123-240, gnl|canFam2|chr28 (5894229-5894085) | |
| 123-240, gnl|echTel1|scaffold_297398 (50970-50826) | |
| 123-240, gnl|galGal2|chr6 (18194351-18194494) | |
| 123-240, gnl|hg17|chr10 (44196209-44196353) | |
| 123-240, gnl|Hg17|chr10 (44196333-44196216) | |
| 123-240, gnl|loxAfr1|scaffold_1779 (138618-138474) | |
| 123-240, gnl|mm7|chr6 (117197952-117197803) | |
| 123-240, gnl|Mm7|chr6 (117197826-117197943) | |
| 123-240, gnl|monDom2|scaffold_41 (7730412-7730553) | |
| 123-240, gnl|rheMac2|chr9 (44553044-44553188) | |
| 123-240, gnl|rn3|chr4 (153751510-153751361) | |
| 123-240, gnl|tetNig1|chr17 (4683057-4682916) | |
| 322-2011, gnl|bosTau2|chr28 (33676487-33678161) | |
| 322-2011, gnl|Hg17|chr10 (44188802-44187140) | |
| 2015-2865, gnl|bosTau2|chr28 (33678118-33678973) | |
| 2015-2865, gnl|Hg17|chr10 (44187173-44186340) | |
| 2015-2865, gnl|Mm7|chr6 (117206212-117206999) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cag (0.907167) | |
| csp (0.644745) | |
| cty (0.62448) | |
| cly (0.603209) | |
| lnt (0.569233) | |
| jca (0.34188) | |
| sme (0.305437) | |
| lun (0.300978) | |
| che (0.272628) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| bla (0.248694) | |
| eep (0.245128) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| ton (0.1755) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| eli (0.151814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| pla (0.133672) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.907167) | |
| csp (0.644745) | |
| cty (0.62448) | |
| cly (0.603209) | |
| lnt (0.569233) | |
| jca (0.34188) | |
| sme (0.305437) | |
| lun (0.300978) | |
| che (0.272628) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| bla (0.248694) | |
| eep (0.245128) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| ton (0.1755) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| eli (0.151814) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| pla (0.133672) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ldo (0.0970026) |