Non-Coding RNA Search

Ss1.1-Liv1-LVR010018G03.5

Sequence:


               
               ATTCATTCAAGATGGCAGCCCAGCGCGATCTGAGGAGGTCGCGGTTGCTTCTGTGGAGGT
TGTGGCAGGCTCGAGGGGTTCCACAAAACCCGGGACTCGGCCTGAGCCTAAAAACTAGAA
CTTATTCCCAGAGCGACGGCCCGTACTCGCGTACGGCGCTCTATGAGCTGCTCGGCGTCC
CTTCCACGGCCACGCAGGCGCAGATCAAGGCGGCCTACTACCGGCAGAGCTTCCTCTACC
ACCCGGACCGCAACTCCGGGAGTGCTGAGGCCGCCGAGCGCTTCACGCGCATCTCTCAGG
CGTACGTGGTGCTGAGCAGTGCTACCCTGCGTCGCAAATATGACCGAGGTCTGCTCAGCG
ACGAGGACTTGCGCGGCCCCGGCGTCCGGCCCTCCAAGAAGCCCACCGCTGACCCCGACT
CGCCCCGCACCCCACCGCCTGCTTCTCGGGCCCACGGCCGTGGTCAGGCCTCAGCGGGCG
CCAGCAACACCATGTTCAACTTTGACGCCTTCTACCGGGCGCACTACGGCGAGCAGCTGG
AGCGCGAGCGGCGCCTTAGGGCCCGGAGGGAGGCCCTTCGCAAGCAGCAGGAGGACCGCG
CCAATAAGGGCTTACGCTGGGATGAGATCCGAGACTCGGCTTTTTTCTTGTTTCTGCTCA
CAGTCTTCATCATCATGAGTTTTCGTTTTTAATTGGAGAGTGGAGGGAAGGGGAGCAGCC
CCCAGCCAGCACCCCCAACCCCCCAAGAAAATGGCTGTGCGTGTCATCTTGAACTCATTG
CCCTCCATTGTCTACCTCTCCTGGGGTCCGAAGAATTGCTCTCCCCCCTCTTCGTCCCCA
CCCGTCCAGTTTAACCACTGATCTTCACATCCCTATCCCTCTGGTCCAGATAAGGAGGCT
TGTTGCTGCCCAAGAAAGAGGCCTCCAATGAAGAGTCCCGAAAGTCCGAGAGCGAGAGGT
TTCCTGGAGGCCCTGGGCGGCCTGCTGCCAGATGTTGTCAACTTCTGGAATACTTGCTCT
AGCTTTCTTGTAAAGCTCTGAGCAAGACTCGCCTGCTCCTACCCCACGTTTGTAGCGTGG
GGCGTCTCTGTAACCTTGAAACGTGCAATGTGACCAATCATGGCTGCCAAAAGAAAAATT
CTGGGGTTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCATTCAAGATGGCAGCCCAGCGCGATCTGAGGAGGTCGCGGTTGCTTCTGTGGAGGT
TGTGGCAGGCTCGAGGGGTTCCACAAAACCCGGGACTCGGCCTGAGCCTAAAAACTAGAA
CTTATTCCCAGAGCGACGGCCCGTACTCGCGTACGGCGCTCTATGAGCTGCTCGGCGTCC
CTTCCACGGCCACGCAGGCGCAGATCAAGGCGGCCTACTACCGGCAGAGCTTCCTCTACC
ACCCGGACCGCAACTCCGGGAGTGCTGAGGCCGCCGAGCGCTTCACGCGCATCTCTCAGG
CGTACGTGGTGCTGAGCAGTGCTACCCTGCGTCGCAAATATGACCGAGGTCTGCTCAGCG
ACGAGGACTTGCGCGGCCCCGGCGTCCGGCCCTCCAAGAAGCCCACCGCTGACCCCGACT
CGCCCCGCACCCCACCGCCTGCTTCTCGGGCCCACGGCCGTGGTCAGGCCTCAGCGGGCG
CCAGCAACACCATGTTCAACTTTGACGCCTTCTACCGGGCGCACTACGGCGAGCAGCTGG
AGCGCGAGCGGCGCCTTAGGGCCCGGAGGGAGGCCCTTCGCAAGCAGCAGGAGGACCGCG
CCAATAAGGGCTTACGCTGGGATGAGATCCGAGACTCGGCTTTTTTCTTGTTTCTGCTCA
CAGTCTTCATCATCATGAGTTTTCGTTTTTAATTGGAGAGTGGAGGGAAGGGGAGCAGCC
CCCAGCCAGCACCCCCAACCCCCCAAGAAAATGGCTGTGCGTGTCATCTTGAACTCATTG
CCCTCCATTGTCTACCTCTCCTGGGGTCCGAAGAATTGCTCTCCCCCCTCTTCGTCCCCA
CCCGTCCAGTTTAACCACTGATCTTCACATCCCTATCCCTCTGGTCCAGATAAGGAGGCT
TGTTGCTGCCCAAGAAAGAGGCCTCCAATGAAGAGTCCCGAAAGTCCGAGAGCGAGAGGT
TTCCTGGAGGCCCTGGGCGGCCTGCTGCCAGATGTTGTCAACTTCTGGAATACTTGCTCT
AGCTTTCTTGTAAAGCTCTGAGCAAGACTCGCCTGCTCCTACCCCACGTTTGTAGCGTGG
GGCGTCTCTGTAACCTTGAAACGTGCAATGTGACCAATCATGGCTGCCAAAAGAAAAATT
CTGGGGTTGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               WBS18_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               WBS18_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               161-280, - strand, RNAz p=0.612464
               

               
               963-1122, - strand, RNAz p=0.993474

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-280, - strand, RNAz p=0.612464
               

               
               963-1122, - strand, RNAz p=0.993474

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-389, gnl|bosTau2|chr25 (29963611-29963223)
               

               
               1-389, gnl|Hg17|chr7 (72542415-72542027)
               

               
               1-389, gnl|Mm7|chr5 (134035527-134035887)
               


               
               448-1152, gnl|bosTau2|chr25 (29963224-29962517)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-389, gnl|bosTau2|chr25 (29963611-29963223)
               

               
               1-389, gnl|Hg17|chr7 (72542415-72542027)
               

               
               1-389, gnl|Mm7|chr5 (134035527-134035887)
               


               
               448-1152, gnl|bosTau2|chr25 (29963224-29962517)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hlv (0.278513)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	161-280, - strand, RNAz p=0.612464
	963-1122, - strand, RNAz p=0.993474

	1-389, gnl\|bosTau2\|chr25 (29963611-29963223)
	1-389, gnl\|Hg17\|chr7 (72542415-72542027)
	1-389, gnl\|Mm7\|chr5 (134035527-134035887)

	448-1152, gnl\|bosTau2\|chr25 (29963224-29962517)

	hlv (0.278513)
	pla (0.133672)
	cly (0.120642)
	nbm (0.0993246)
	eje (0.0988338)