Ss1.1-Liv1-LVR010018H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAAGCGGCCGCTGCGGCAGCAGGCCCCTCCAGCCTGTATTGATTCTAGTGGAAGCCT AGAGAAGGCTTGAGTGAAGGTGGAAGCGGCCGCTGCGGCAGCAGACCCCTGAGCCAGGAG GAGTGAGAACCCTGACCCCTAACCCCACTGCGTCCAGCCAATAGGAGTCCAGCCACCATG GCGGAGCTGCAGGAGGTGCAGATCACGGAGGAGAAACCGCTGTTGCCAGGGCAGACACCC GAGGTGGCCAAGACTCACAGTGTGGAGACACCTTATGGCTCTGTCACTTTTACTGTCTAT GGCACCCCCAAGCCCAAACGCCCAGCGATACTCACCTACCATGATGTGGGACTCAACTAT AAATCCTGTTTCCAGCCGCTGTTTCAGTTTGGGGATATGCAAGAAATCATTCAGAACTTT GTGCGGGTCCATGTGGATGCCCCTGGGATGGAAGAGGGGGCTCCCGTGTTCCCTTTGGGA TATCAGTACCCGTCTCTGGACCAGCTTGCAGACATGATCCCGTGCATCCTACAGTACTTA AATTTCTCCTCAATAATTGGAATTGGTGTTGGAGCTGGAGCCTACGTCCTCTCTCGATAT GCTCTTAGTCACCCGGATACTGTGGAGGGTCTCGTCCTCATCAACATCGATCCCAATGCC AAGGGCTGGATGGACTGGGCAGCCCACAAGCTTACAGGCCTCACCTCTTCCATTTCGGAG ATGATCCTTGGGCATCTTTTCAGCCAGGAAGAGCTGTCTGGAAATTCTGAGTTAATACAA AAGTATAGAAATATCATTACACATGCCCCCAACCTGGCAAACATTGAATTGTACTGGAAC AGCTACAACAACCGCCGAGACCTGAACTTTGAGCGCGGAGGTGATGTCACTCTCAAGTGC CCTGTGATGCTGGTGGTAGGAGACCAAGCACCCCATGAAGATGCAGTGGTGGAATGCAAC TCAAAACTGGACCCCACCCAGACTTCTTTCCTCAAGATGGCTGACTCTGGAGGTCAGCCG CAGCTGACTCAGCCAGGCAAACTGACCGAGGCCTTCAAGTACTTCCTGCAGGGCATGGGC TATATGGCCTCCTCCTGCATGACTCGCCTATCCCGGTCTCGCACAGCCTCCCTGACCAGC GCAGCCTCCATTGATGGCAACCGGTCCCGCTCTCGCACCTTGTCCCAGAGCAGCGAGTCT GGGACTCTTCCTTCAGGGCCCCCGGGGCACACCATGGAGGTCTCCTGTTGAATGACCCTT GTTGCCCTGGTGTGGGACCCAGCCCTCACCTCCCCCAGCACTAACCTGGGAGGTGCCTAG GGCGCTGGGCCAGAGGGAGCAAGGGAAGATGGGCAAATCATATGGGGAGATGACCTTGAT CTCTGATTGCTACCCTAACCTTGACCTCTAACCTGTGATTCTCCTCAGCTCCTGGGAGAG ATGTCCTAATATCTCTTAGGGACCCAGGCCCCTAAATGATCCCTCTCCTTCATCTTGGTG TTAAGGTGGAGAAGGCACGTATCTCTTCTCCCTAATCTAGGTGTCTGTCGCTAAGGGATA AGGGGTTGCTGTAGTTGTCCGTGGTGTCTCCACTGGATGCTCTCTCCTTATCCCATATCG CAAGGGTAGGGGGCTTGGGGCTGGCACCACTCACCAAAGCTGATAGGGCTTCTCATGAAC CCTTCAGACCTCTGAAGGGTATGGGCCTACACGAATGTGTGCCGGGGAGACTTGCTGCTG GCTTAGTGGTCCTCAGGATGTGACAGAAACATTCGGTGTGGAAATGGAAGTTGGAATGGG AGGTGGTGGGCAGTGAACAAGTGTGAGGGAAGGATTGGAGCTGGGCAGTAGGAAGGGGCC TGGGGCCATTGGCTGCACTAACTTTGGTAGCTGCCTAGACAGTGTGTGTCTAGAGTGGGA GGGGGGAGGGAGCCAAGCTGGGCAGGGCTGCTTGGGGCTTGGCATAGGGGTGGGAAGGGC TGCCTTGGGGCTCTGACCACAGTGTGTTATGTGTGGAGGGTGCCCTCCTGTCTCCCACAG TGTCTGCTGTAACAATAAACTGTAGCGGAATCTGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAAGCGGCCGCTGCGGCAGCAGGCCCCTCCAGCCTGTATTGATTCTAGTGGAAGCCT AGAGAAGGCTTGAGTGAAGGTGGAAGCGGCCGCTGCGGCAGCAGACCCCTGAGCCAGGAG GAGTGAGAACCCTGACCCCTAACCCCACTGCGTCCAGCCAATAGGAGTCCAGCCACCATG GCGGAGCTGCAGGAGGTGCAGATCACGGAGGAGAAACCGCTGTTGCCAGGGCAGACACCC GAGGTGGCCAAGACTCACAGTGTGGAGACACCTTATGGCTCTGTCACTTTTACTGTCTAT GGCACCCCCAAGCCCAAACGCCCAGCGATACTCACCTACCATGATGTGGGACTCAACTAT AAATCCTGTTTCCAGCCGCTGTTTCAGTTTGGGGATATGCAAGAAATCATTCAGAACTTT GTGCGGGTCCATGTGGATGCCCCTGGGATGGAAGAGGGGGCTCCCGTGTTCCCTTTGGGA TATCAGTACCCGTCTCTGGACCAGCTTGCAGACATGATCCCGTGCATCCTACAGTACTTA AATTTCTCCTCAATAATTGGAATTGGTGTTGGAGCTGGAGCCTACGTCCTCTCTCGATAT GCTCTTAGTCACCCGGATACTGTGGAGGGTCTCGTCCTCATCAACATCGATCCCAATGCC AAGGGCTGGATGGACTGGGCAGCCCACAAGCTTACAGGCCTCACCTCTTCCATTTCGGAG ATGATCCTTGGGCATCTTTTCAGCCAGGAAGAGCTGTCTGGAAATTCTGAGTTAATACAA AAGTATAGAAATATCATTACACATGCCCCCAACCTGGCAAACATTGAATTGTACTGGAAC AGCTACAACAACCGCCGAGACCTGAACTTTGAGCGCGGAGGTGATGTCACTCTCAAGTGC CCTGTGATGCTGGTGGTAGGAGACCAAGCACCCCATGAAGATGCAGTGGTGGAATGCAAC TCAAAACTGGACCCCACCCAGACTTCTTTCCTCAAGATGGCTGACTCTGGAGGTCAGCCG CAGCTGACTCAGCCAGGCAAACTGACCGAGGCCTTCAAGTACTTCCTGCAGGGCATGGGC TATATGGCCTCCTCCTGCATGACTCGCCTATCCCGGTCTCGCACAGCCTCCCTGACCAGC GCAGCCTCCATTGATGGCAACCGGTCCCGCTCTCGCACCTTGTCCCAGAGCAGCGAGTCT GGGACTCTTCCTTCAGGGCCCCCGGGGCACACCATGGAGGTCTCCTGTTGAATGACCCTT GTTGCCCTGGTGTGGGACCCAGCCCTCACCTCCCCCAGCACTAACCTGGGAGGTGCCTAG GGCGCTGGGCCAGAGGGAGCAAGGGAAGATGGGCAAATCATATGGGGAGATGACCTTGAT CTCTGATTGCTACCCTAACCTTGACCTCTAACCTGTGATTCTCCTCAGCTCCTGGGAGAG ATGTCCTAATATCTCTTAGGGACCCAGGCCCCTAAATGATCCCTCTCCTTCATCTTGGTG TTAAGGTGGAGAAGGCACGTATCTCTTCTCCCTAATCTAGGTGTCTGTCGCTAAGGGATA AGGGGTTGCTGTAGTTGTCCGTGGTGTCTCCACTGGATGCTCTCTCCTTATCCCATATCG CAAGGGTAGGGGGCTTGGGGCTGGCACCACTCACCAAAGCTGATAGGGCTTCTCATGAAC CCTTCAGACCTCTGAAGGGTATGGGCCTACACGAATGTGTGCCGGGGAGACTTGCTGCTG GCTTAGTGGTCCTCAGGATGTGACAGAAACATTCGGTGTGGAAATGGAAGTTGGAATGGG AGGTGGTGGGCAGTGAACAAGTGTGAGGGAAGGATTGGAGCTGGGCAGTAGGAAGGGGCC TGGGGCCATTGGCTGCACTAACTTTGGTAGCTGCCTAGACAGTGTGTGTCTAGAGTGGGA GGGGGGAGGGAGCCAAGCTGGGCAGGGCTGCTTGGGGCTTGGCATAGGGGTGGGAAGGGC TGCCTTGGGGCTCTGACCACAGTGTGTTATGTGTGGAGGGTGCCCTCCTGTCTCCCACAG TGTCTGCTGTAACAATAAACTGTAGCGGAATCTGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1205-1402, - strand, RNAz p=0.991762 | |
| 1443-1561, + strand, RNAz p=0.553509 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1205-1402, - strand, RNAz p=0.991762 | |
| 1443-1561, + strand, RNAz p=0.553509 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX247987, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 359-479, gnl|bosTau2|chr10 (15552926-15552806) | |
| 359-479, gnl|canFam2|chr15 (21118805-21118901) | |
| 359-479, gnl|danRer3|chr25 (18129944-18130040) | |
| 359-479, gnl|dasNov1|scaffold_708 (51802-51898) | |
| 359-479, gnl|echTel1|scaffold_308540 (85937-85842) | |
| 359-479, gnl|fr1|chrUn (82514273-82514369) | |
| 359-479, gnl|hg17|chr14 (20560057-20560153) | |
| 359-479, gnl|Hg17|chr14 (20560181-20560061) | |
| 359-479, gnl|loxAfr1|scaffold_34924 (14851-14934) | |
| 359-479, gnl|mm7|chr14 (47243991-47244087) | |
| 359-479, gnl|Mm7|chr14 (47244115-47243995) | |
| 359-479, gnl|monDom2|scaffold_12 (29527923-29527827) | |
| 359-479, gnl|oryCun1|scaffold_211265 (41254-41158) | |
| 359-479, gnl|panTro1|chrUn_random (21856615-21856711) | |
| 359-479, gnl|rheMac2|chr20 (56859843-56859747) | |
| 359-479, gnl|rn3|chr15 (27359292-27359388) | |
| 359-479, gnl|tetNig1|chrUn_random (22075584-22075488) | |
| 737-851, gnl|bosTau2|chr10 (15550941-15550827) | |
| 737-851, gnl|canFam2|chr15 (21116556-21116670) | |
| 737-851, gnl|danRer3|chr25 (18126537-18126645) | |
| 737-851, gnl|dasNov1|scaffold_708 (49505-49619) | |
| 737-851, gnl|echTel1|scaffold_308540 (88234-88120) | |
| 737-851, gnl|fr1|chrUn (82513328-82513436) | |
| 737-851, gnl|galGal2|chr11 (335274-335388) | |
| 737-851, gnl|hg17|chr14 (20557631-20557745) | |
| 737-851, gnl|Hg17|chr14 (20557752-20557638) | |
| 737-851, gnl|loxAfr1|scaffold_3753 (115665-115551) | |
| 737-851, gnl|mm7|chr14 (47241741-47241855) | |
| 737-851, gnl|Mm7|chr14 (47241862-47241748) | |
| 737-851, gnl|monDom2|scaffold_12 (29531137-29531023) | |
| 737-851, gnl|oryCun1|scaffold_211265 (43401-43287) | |
| 737-851, gnl|panTro1|chrUn_random (21854186-21854300) | |
| 737-851, gnl|rheMac2|chr7 (83731472-83731586) | |
| 737-851, gnl|rn3|chr15 (27356938-27357052) | |
| 737-851, gnl|tetNig1|chrUn_random (22076334-22076226) | |
| 1085-2075, gnl|bosTau2|chr10 (15549234-15548244) | |
| 1085-2075, gnl|Hg17|chr14 (20555761-20554771) | |
| 1085-2075, gnl|Mm7|chr14 (47239986-47238962) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 359-479, gnl|bosTau2|chr10 (15552926-15552806) | |
| 359-479, gnl|canFam2|chr15 (21118805-21118901) | |
| 359-479, gnl|danRer3|chr25 (18129944-18130040) | |
| 359-479, gnl|dasNov1|scaffold_708 (51802-51898) | |
| 359-479, gnl|echTel1|scaffold_308540 (85937-85842) | |
| 359-479, gnl|fr1|chrUn (82514273-82514369) | |
| 359-479, gnl|hg17|chr14 (20560057-20560153) | |
| 359-479, gnl|Hg17|chr14 (20560181-20560061) | |
| 359-479, gnl|loxAfr1|scaffold_34924 (14851-14934) | |
| 359-479, gnl|mm7|chr14 (47243991-47244087) | |
| 359-479, gnl|Mm7|chr14 (47244115-47243995) | |
| 359-479, gnl|monDom2|scaffold_12 (29527923-29527827) | |
| 359-479, gnl|oryCun1|scaffold_211265 (41254-41158) | |
| 359-479, gnl|panTro1|chrUn_random (21856615-21856711) | |
| 359-479, gnl|rheMac2|chr20 (56859843-56859747) | |
| 359-479, gnl|rn3|chr15 (27359292-27359388) | |
| 359-479, gnl|tetNig1|chrUn_random (22075584-22075488) | |
| 737-851, gnl|bosTau2|chr10 (15550941-15550827) | |
| 737-851, gnl|canFam2|chr15 (21116556-21116670) | |
| 737-851, gnl|danRer3|chr25 (18126537-18126645) | |
| 737-851, gnl|dasNov1|scaffold_708 (49505-49619) | |
| 737-851, gnl|echTel1|scaffold_308540 (88234-88120) | |
| 737-851, gnl|fr1|chrUn (82513328-82513436) | |
| 737-851, gnl|galGal2|chr11 (335274-335388) | |
| 737-851, gnl|hg17|chr14 (20557631-20557745) | |
| 737-851, gnl|Hg17|chr14 (20557752-20557638) | |
| 737-851, gnl|loxAfr1|scaffold_3753 (115665-115551) | |
| 737-851, gnl|mm7|chr14 (47241741-47241855) | |
| 737-851, gnl|Mm7|chr14 (47241862-47241748) | |
| 737-851, gnl|monDom2|scaffold_12 (29531137-29531023) | |
| 737-851, gnl|oryCun1|scaffold_211265 (43401-43287) | |
| 737-851, gnl|panTro1|chrUn_random (21854186-21854300) | |
| 737-851, gnl|rheMac2|chr7 (83731472-83731586) | |
| 737-851, gnl|rn3|chr15 (27356938-27357052) | |
| 737-851, gnl|tetNig1|chrUn_random (22076334-22076226) | |
| 1085-2075, gnl|bosTau2|chr10 (15549234-15548244) | |
| 1085-2075, gnl|Hg17|chr14 (20555761-20554771) | |
| 1085-2075, gnl|Mm7|chr14 (47239986-47238962) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| hyp (0.571347) | |
| cov (0.528611) | |
| nep (0.36785) | |
| eep (0.367692) | |
| cty (0.31224) | |
| pty (0.285429) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ste (0.135208) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.571347) | |
| cov (0.528611) | |
| nep (0.36785) | |
| eep (0.367692) | |
| cty (0.31224) | |
| pty (0.285429) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ste (0.135208) |