Ss1.1-Liv1-LVR010019A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGCGCCGGTCCAGCAGAAATGGCGGCGGCAGTGCGCGTGACGGCGGCCCGAGCCAGGC TCCGCGTTGTAGTGAGAAGTCTCCACGCCGGGGTGCGCAGTCTGTGCACCCAGCCTGTCT CAGTTAACGAGCGCATCGAGAACAAGCGTCAGGCCGCACTGCTGGGAGGAGGCCAGCGCC GCATTGATTCGCAGCATAAGCGAGGAAAGCTAACGGCCAGAGAACGGATCAGTCTCTTGC TGGACCCCGGCAGTTTTATTGAGAGTGACATGTTTGTGGAACACAGATGTGCAGATTTTG GAATGGCTGCTGACAAGAATAAGTTTCCTGGAGACAGCGTTGTCACTGGACGGGGCCGAA TCAATGGAAGATTGGTTTATGTCTTCAGTCAGGATTTTACCGTTTTTGGAGGCAGTCTGT CTGGAGCCCATGCCCAAAAGATCTGCAAGATCATGGACCAAGCCATGACAGTTGGGGCTC CGGTGATTGGACTGAATGACTCAGGGGGAGCCAGGATCCAAGAAGGAGTAGAGTCTTTGG CTGGCTATGCAGACATCTTTCTGAGGAATGTCTCGGCATCTGGAGTCATCCCTCAGATTT CTCTGATCATGGGCCCGTGTGCTGGTGGGGCTGTCTACTCCCCGGCCCTGACAGACTTCA CATTCATGGTAAAGGACACCTCCTACTTATTCATCACTGGTCCTGATGTTGTGAAGTCTG TCACCAACGAGGACGTGACCCAGGAGGAGCTCGGGGGTGCCAGGACCCACACCACCATGT CAGGCGTGGCCCACAGAGCTTTTGACAATGATGTCGATGCCCTATGTAATCTCCGGGAGT TCTTCAACTACCTGCCTCTCAGCAATCAGGACCCGGCTCCCATCCGTGAGTGCCATGATC CCAGTGACCGTCTGGTTCCTGAGCTTGACACAGTTGTCCCTTTGGAATCGACTAGAGCCT ATGACATGGTGGACATAATATACTCTATTGTTGACGAGCGAGACTTTTTTGAGATCATGC CCAATTATGCCAAGAACATCATTGTTGGTTTTGCAAGAATGAATGGGAGGACTGTTGGAA TTGTTGGCAACCAGCCTAAGGTGGCTTCAGGATGCTTGGATATTAATTCATCTGTGAAAG GGGCTCGTTTTGTCCGATTCTGTGATGCATTTAACATTCCACTCATCACTTTCGTTGATG TCCCTGGCTTTCTGCCTGGCACAGCGCAGGAATACGGGGGCATCATCCGGCATGGCGCCA AGCTGCTCTATGCGTTCGCCGAGGCAACTGTGCCCAAAATCACAGTCATCACCAGGAAGG CCTATGGTGGAGCCTATGATGTCATGAGCTCCAAGCACCTTTGTGGTGACACCAACTACG CCTGGCCCACAGCAGAGATTGCCGTCATGGGAGCAAAGGGTGCCGTGGAGATCATCTTCA AAGGGCACGAGAATGTGGAGGCCGCGCAGGCAGAGTACATTGAGAAGTTTGCCAACCCTT TTCCTGCAGCTGTGAGAGGGTTTGTGGATGACATCATCCAGCCTTCCTCTACCCGGGCCC GAATCTGCTGTGACCTGGATGTCTTGGCCAGCAAGAAGGTACAGCGCCCTTGGAGGAAAC ATGCAAATATTCCCTTGTAAATGAATCAAGAGAAGATAAACCAGGAGCTGATTATTGCCG AGCCAGTTGCACCTGTCCATATGCCTTGTGCAGTCATGAAACCTGGGAATCTAAGTTTTA ATAATAACTTGAAATGGCCAAGTTTAATAAGTTCTAGAAGGATTTCATTTGTGCCTTAAT GTAAAATTATTTGCTTTATTAAAAACCCAAACTCAAATGAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGCGCCGGTCCAGCAGAAATGGCGGCGGCAGTGCGCGTGACGGCGGCCCGAGCCAGGC TCCGCGTTGTAGTGAGAAGTCTCCACGCCGGGGTGCGCAGTCTGTGCACCCAGCCTGTCT CAGTTAACGAGCGCATCGAGAACAAGCGTCAGGCCGCACTGCTGGGAGGAGGCCAGCGCC GCATTGATTCGCAGCATAAGCGAGGAAAGCTAACGGCCAGAGAACGGATCAGTCTCTTGC TGGACCCCGGCAGTTTTATTGAGAGTGACATGTTTGTGGAACACAGATGTGCAGATTTTG GAATGGCTGCTGACAAGAATAAGTTTCCTGGAGACAGCGTTGTCACTGGACGGGGCCGAA TCAATGGAAGATTGGTTTATGTCTTCAGTCAGGATTTTACCGTTTTTGGAGGCAGTCTGT CTGGAGCCCATGCCCAAAAGATCTGCAAGATCATGGACCAAGCCATGACAGTTGGGGCTC CGGTGATTGGACTGAATGACTCAGGGGGAGCCAGGATCCAAGAAGGAGTAGAGTCTTTGG CTGGCTATGCAGACATCTTTCTGAGGAATGTCTCGGCATCTGGAGTCATCCCTCAGATTT CTCTGATCATGGGCCCGTGTGCTGGTGGGGCTGTCTACTCCCCGGCCCTGACAGACTTCA CATTCATGGTAAAGGACACCTCCTACTTATTCATCACTGGTCCTGATGTTGTGAAGTCTG TCACCAACGAGGACGTGACCCAGGAGGAGCTCGGGGGTGCCAGGACCCACACCACCATGT CAGGCGTGGCCCACAGAGCTTTTGACAATGATGTCGATGCCCTATGTAATCTCCGGGAGT TCTTCAACTACCTGCCTCTCAGCAATCAGGACCCGGCTCCCATCCGTGAGTGCCATGATC CCAGTGACCGTCTGGTTCCTGAGCTTGACACAGTTGTCCCTTTGGAATCGACTAGAGCCT ATGACATGGTGGACATAATATACTCTATTGTTGACGAGCGAGACTTTTTTGAGATCATGC CCAATTATGCCAAGAACATCATTGTTGGTTTTGCAAGAATGAATGGGAGGACTGTTGGAA TTGTTGGCAACCAGCCTAAGGTGGCTTCAGGATGCTTGGATATTAATTCATCTGTGAAAG GGGCTCGTTTTGTCCGATTCTGTGATGCATTTAACATTCCACTCATCACTTTCGTTGATG TCCCTGGCTTTCTGCCTGGCACAGCGCAGGAATACGGGGGCATCATCCGGCATGGCGCCA AGCTGCTCTATGCGTTCGCCGAGGCAACTGTGCCCAAAATCACAGTCATCACCAGGAAGG CCTATGGTGGAGCCTATGATGTCATGAGCTCCAAGCACCTTTGTGGTGACACCAACTACG CCTGGCCCACAGCAGAGATTGCCGTCATGGGAGCAAAGGGTGCCGTGGAGATCATCTTCA AAGGGCACGAGAATGTGGAGGCCGCGCAGGCAGAGTACATTGAGAAGTTTGCCAACCCTT TTCCTGCAGCTGTGAGAGGGTTTGTGGATGACATCATCCAGCCTTCCTCTACCCGGGCCC GAATCTGCTGTGACCTGGATGTCTTGGCCAGCAAGAAGGTACAGCGCCCTTGGAGGAAAC ATGCAAATATTCCCTTGTAAATGAATCAAGAGAAGATAAACCAGGAGCTGATTATTGCCG AGCCAGTTGCACCTGTCCATATGCCTTGTGCAGTCATGAAACCTGGGAATCTAAGTTTTA ATAATAACTTGAAATGGCCAAGTTTAATAAGTTCTAGAAGGATTTCATTTGTGCCTTAAT GTAAAATTATTTGCTTTATTAAAAACCCAAACTCAAATGAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1276-1419, + strand, RNAz p=0.713693 | |
| 1276-1419, - strand, RNAz p=0.713693 | |
| 1276-1391, + strand, RNAz p=0.953476 | |
| 1276-1391, - strand, RNAz p=0.953476 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1276-1419, + strand, RNAz p=0.713693 | |
| 1276-1419, - strand, RNAz p=0.713693 | |
| 1276-1391, + strand, RNAz p=0.953476 | |
| 1276-1391, - strand, RNAz p=0.953476 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 5-204, gnl|bosTau2|chr1 (85860533-85860334) | |
| 5-204, gnl|Hg17|chr3 (137451885-137452099) | |
| 5-204, gnl|Mm7|chr9 (100677894-100677662) | |
| 448-563, gnl|bosTau2|chr1 (85852452-85852337) | |
| 448-563, gnl|canFam2|chr23 (35752041-35752161) | |
| 448-563, gnl|danRer3|chr2 (17424861-17424741) | |
| 448-563, gnl|dasNov1|scaffold_117249 (5112-5232) | |
| 448-563, gnl|echTel1|scaffold_295425 (2921-3041) | |
| 448-563, gnl|fr1|chrUn (137582871-137582988) | |
| 448-563, gnl|hg17|chr3 (137463491-137463611) | |
| 448-563, gnl|Hg17|chr3 (137463490-137463605) | |
| 448-563, gnl|loxAfr1|scaffold_22065 (13512-13392) | |
| 448-563, gnl|mm7|chr9 (100666246-100666126) | |
| 448-563, gnl|Mm7|chr9 (100666245-100666130) | |
| 448-563, gnl|monDom2|scaffold_24 (31049235-31049355) | |
| 448-563, gnl|oryCun1|scaffold_199005 (492-372) | |
| 448-563, gnl|panTro1|chr2 (139738690-139738810) | |
| 448-563, gnl|rheMac2|chr2 (151558636-151558516) | |
| 448-563, gnl|rn3|chr8 (106004969-106004849) | |
| 448-563, gnl|tetNig1|chr10 (8888455-8888338) | |
| 448-563, gnl|xenTro1|scaffold_614 (20315-20195) | |
| 673-789, gnl|bosTau2|chr1 (85820181-85820065) | |
| 673-789, gnl|Hg17|chr3 (137495294-137495410) | |
| 673-789, gnl|Mm7|chr9 (100642269-100642153) | |
| 988-1111, gnl|bosTau2|chr1 (85800166-85800043) | |
| 988-1111, gnl|canFam2|chr23 (35813866-35814034) | |
| 988-1111, gnl|danRer3|chr2 (17419830-17419677) | |
| 988-1111, gnl|echTel1|scaffold_277033 (5352-5515) | |
| 988-1111, gnl|fr1|chrUn (137583852-137583993) | |
| 988-1111, gnl|hg17|chr3 (137518450-137518615) | |
| 988-1111, gnl|Hg17|chr3 (137518482-137518605) | |
| 988-1111, gnl|loxAfr1|scaffold_28184 (6841-6681) | |
| 988-1111, gnl|mm7|chr9 (100630931-100630765) | |
| 988-1111, gnl|Mm7|chr9 (100630897-100630774) | |
| 988-1111, gnl|monDom2|scaffold_24 (31076968-31077132) | |
| 988-1111, gnl|oryCun1|scaffold_213583 (20009-19840) | |
| 988-1111, gnl|panTro1|chr2 (139793455-139793620) | |
| 988-1111, gnl|rheMac2|chr2 (151493681-151493515) | |
| 988-1111, gnl|rn3|chr8 (105971335-105971170) | |
| 988-1111, gnl|tetNig1|chr10 (8887549-8887407) | |
| 988-1111, gnl|xenTro1|scaffold_614 (17254-17110) | |
| 1276-1419, gnl|bosTau2|chr1 (85768415-85768272) | |
| 1276-1419, gnl|canFam2|chr23 (35832700-35832821) | |
| 1276-1419, gnl|danRer3|chr2 (17418448-17418319) | |
| 1276-1419, gnl|dasNov1|scaffold_50352 (7043-6922) | |
| 1276-1419, gnl|echTel1|scaffold_281450 (51528-51649) | |
| 1276-1419, gnl|fr1|chrUn (137584427-137584537) | |
| 1276-1419, gnl|galGal2|chr9 (197880-197995) | |
| 1276-1419, gnl|hg17|chr3 (137529156-137529277) | |
| 1276-1419, gnl|loxAfr1|scaffold_22577 (21521-21400) | |
| 1276-1419, gnl|mm7|chr9 (100628240-100628119) | |
| 1276-1419, gnl|oryCun1|scaffold_213583 (6004-5883) | |
| 1276-1419, gnl|panTro1|chr2 (139804176-139804297) | |
| 1276-1419, gnl|rheMac2|chr2 (151481038-151480917) | |
| 1276-1419, gnl|rn3|chr8 (105968180-105968059) | |
| 1276-1419, gnl|tetNig1|chr10 (8886977-8886856) | |
| 1276-1419, gnl|xenTro1|scaffold_614 (16022-15917) | |
| 1500-1838, gnl|bosTau2|chr1 (85766280-85765950) | |
| 1500-1838, gnl|Hg17|chr3 (137531427-137531763) | |
| 1500-1838, gnl|Mm7|chr9 (100625814-100625506) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-204, gnl|bosTau2|chr1 (85860533-85860334) | |
| 5-204, gnl|Hg17|chr3 (137451885-137452099) | |
| 5-204, gnl|Mm7|chr9 (100677894-100677662) | |
| 448-563, gnl|bosTau2|chr1 (85852452-85852337) | |
| 448-563, gnl|canFam2|chr23 (35752041-35752161) | |
| 448-563, gnl|danRer3|chr2 (17424861-17424741) | |
| 448-563, gnl|dasNov1|scaffold_117249 (5112-5232) | |
| 448-563, gnl|echTel1|scaffold_295425 (2921-3041) | |
| 448-563, gnl|fr1|chrUn (137582871-137582988) | |
| 448-563, gnl|hg17|chr3 (137463491-137463611) | |
| 448-563, gnl|Hg17|chr3 (137463490-137463605) | |
| 448-563, gnl|loxAfr1|scaffold_22065 (13512-13392) | |
| 448-563, gnl|mm7|chr9 (100666246-100666126) | |
| 448-563, gnl|Mm7|chr9 (100666245-100666130) | |
| 448-563, gnl|monDom2|scaffold_24 (31049235-31049355) | |
| 448-563, gnl|oryCun1|scaffold_199005 (492-372) | |
| 448-563, gnl|panTro1|chr2 (139738690-139738810) | |
| 448-563, gnl|rheMac2|chr2 (151558636-151558516) | |
| 448-563, gnl|rn3|chr8 (106004969-106004849) | |
| 448-563, gnl|tetNig1|chr10 (8888455-8888338) | |
| 448-563, gnl|xenTro1|scaffold_614 (20315-20195) | |
| 673-789, gnl|bosTau2|chr1 (85820181-85820065) | |
| 673-789, gnl|Hg17|chr3 (137495294-137495410) | |
| 673-789, gnl|Mm7|chr9 (100642269-100642153) | |
| 988-1111, gnl|bosTau2|chr1 (85800166-85800043) | |
| 988-1111, gnl|canFam2|chr23 (35813866-35814034) | |
| 988-1111, gnl|danRer3|chr2 (17419830-17419677) | |
| 988-1111, gnl|echTel1|scaffold_277033 (5352-5515) | |
| 988-1111, gnl|fr1|chrUn (137583852-137583993) | |
| 988-1111, gnl|hg17|chr3 (137518450-137518615) | |
| 988-1111, gnl|Hg17|chr3 (137518482-137518605) | |
| 988-1111, gnl|loxAfr1|scaffold_28184 (6841-6681) | |
| 988-1111, gnl|mm7|chr9 (100630931-100630765) | |
| 988-1111, gnl|Mm7|chr9 (100630897-100630774) | |
| 988-1111, gnl|monDom2|scaffold_24 (31076968-31077132) | |
| 988-1111, gnl|oryCun1|scaffold_213583 (20009-19840) | |
| 988-1111, gnl|panTro1|chr2 (139793455-139793620) | |
| 988-1111, gnl|rheMac2|chr2 (151493681-151493515) | |
| 988-1111, gnl|rn3|chr8 (105971335-105971170) | |
| 988-1111, gnl|tetNig1|chr10 (8887549-8887407) | |
| 988-1111, gnl|xenTro1|scaffold_614 (17254-17110) | |
| 1276-1419, gnl|bosTau2|chr1 (85768415-85768272) | |
| 1276-1419, gnl|canFam2|chr23 (35832700-35832821) | |
| 1276-1419, gnl|danRer3|chr2 (17418448-17418319) | |
| 1276-1419, gnl|dasNov1|scaffold_50352 (7043-6922) | |
| 1276-1419, gnl|echTel1|scaffold_281450 (51528-51649) | |
| 1276-1419, gnl|fr1|chrUn (137584427-137584537) | |
| 1276-1419, gnl|galGal2|chr9 (197880-197995) | |
| 1276-1419, gnl|hg17|chr3 (137529156-137529277) | |
| 1276-1419, gnl|loxAfr1|scaffold_22577 (21521-21400) | |
| 1276-1419, gnl|mm7|chr9 (100628240-100628119) | |
| 1276-1419, gnl|oryCun1|scaffold_213583 (6004-5883) | |
| 1276-1419, gnl|panTro1|chr2 (139804176-139804297) | |
| 1276-1419, gnl|rheMac2|chr2 (151481038-151480917) | |
| 1276-1419, gnl|rn3|chr8 (105968180-105968059) | |
| 1276-1419, gnl|tetNig1|chr10 (8886977-8886856) | |
| 1276-1419, gnl|xenTro1|scaffold_614 (16022-15917) | |
| 1500-1838, gnl|bosTau2|chr1 (85766280-85765950) | |
| 1500-1838, gnl|Hg17|chr3 (137531427-137531763) | |
| 1500-1838, gnl|Mm7|chr9 (100625814-100625506) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cki (0.660939) | |
| vin (0.332557) | |
| cli (0.305623) | |
| sme (0.305437) | |
| fat (0.294855) | |
| csk (0.281492) | |
| cst (0.280073) | |
| hea (0.204499) | |
| eje (0.197668) | |
| sin (0.174948) | |
| cje (0.165235) | |
| mga (0.160205) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| cly (0.120642) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.660939) | |
| vin (0.332557) | |
| cli (0.305623) | |
| sme (0.305437) | |
| fat (0.294855) | |
| csk (0.281492) | |
| cst (0.280073) | |
| hea (0.204499) | |
| eje (0.197668) | |
| sin (0.174948) | |
| cje (0.165235) | |
| mga (0.160205) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| cly (0.120642) | |
| jej (0.0989218) | |
| ldo (0.0970026) |