Ss1.1-Liv1-LVR010019F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATCAGTCACTGCCCCTGGCCGGGCAAGGGGCACTTGGTAAACTTGCTACCTCCAGAGCC CCCTGACCTGGTGTGGAAGCGGTGAAGGACTCCTGATGCTCCGGACCTGTCGTGCGCTCT GCTCGCAAGCCAGCCCCTCCCCTGGGGGCTGGCAGCCCCCGAACTTTGATGGTGGGGCCT TTCACCTCAAGGGCACAGGAGAACTGACCCGGGCTTTGCTGGTGCTACGGCTGTGTGCCT GGCCCCCTCTGGTCACCCATGGCCTGGCGCTCCAAGCCTGGTCTCAGCGACTCCTGGGCT CCCGGCTCTCGGGCGCACTTCTCCGAGCATCCATCTATGGGCAGTTTGTGGCTGGTGAGA CCGCAGAGGAGGTGACGGGCTGTGTCCAACAGCTCAAGACCCTAGGCCTCCGGCCCCTCC TGGCAGTGCCCACTGAGGAGGAGCCAGACTCAGCTGTCAAGACTGGTGAGGCCTGGTATG AGGGGAACCTCAGGGCTATGCTGCGATGTGTGGACCTGTCACGAGGCCTCCTGGAGACCC CTGGCCGAACTGGAGACATCCTCATGCAACTGAAGATTACAGCGCTGGCCAGCACTCAGC TCTGTAAGGAGCTAACCTCATGGGTCAGAAGGCCAGGGGATTCCTTGGAGCTGAGCCCCA AGAGACTGGCTGAAGCCATGGACTCTGGGCGGGACCTCCAGGTCTCCTTCCTCAACACTG AGCAAAACCGGCATCTCCAGGCCTCCCTGAGCCGCTTGCACCGGGTGGTACAGCATGCCC GCGCCCAGCACGTGAGGCTCCTGGTGGATGCTGAGTACACCTCGCTGAACCCTACACTCT CTCTGCTGGTGGCCGCCCTGGCTGTGCGCTGGAACAGCCCCAGGGAAGGCGGGCCCTGGG TGTGGAACACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATCAGTCACTGCCCCTGGCCGGGCAAGGGGCACTTGGTAAACTTGCTACCTCCAGAGCC CCCTGACCTGGTGTGGAAGCGGTGAAGGACTCCTGATGCTCCGGACCTGTCGTGCGCTCT GCTCGCAAGCCAGCCCCTCCCCTGGGGGCTGGCAGCCCCCGAACTTTGATGGTGGGGCCT TTCACCTCAAGGGCACAGGAGAACTGACCCGGGCTTTGCTGGTGCTACGGCTGTGTGCCT GGCCCCCTCTGGTCACCCATGGCCTGGCGCTCCAAGCCTGGTCTCAGCGACTCCTGGGCT CCCGGCTCTCGGGCGCACTTCTCCGAGCATCCATCTATGGGCAGTTTGTGGCTGGTGAGA CCGCAGAGGAGGTGACGGGCTGTGTCCAACAGCTCAAGACCCTAGGCCTCCGGCCCCTCC TGGCAGTGCCCACTGAGGAGGAGCCAGACTCAGCTGTCAAGACTGGTGAGGCCTGGTATG AGGGGAACCTCAGGGCTATGCTGCGATGTGTGGACCTGTCACGAGGCCTCCTGGAGACCC CTGGCCGAACTGGAGACATCCTCATGCAACTGAAGATTACAGCGCTGGCCAGCACTCAGC TCTGTAAGGAGCTAACCTCATGGGTCAGAAGGCCAGGGGATTCCTTGGAGCTGAGCCCCA AGAGACTGGCTGAAGCCATGGACTCTGGGCGGGACCTCCAGGTCTCCTTCCTCAACACTG AGCAAAACCGGCATCTCCAGGCCTCCCTGAGCCGCTTGCACCGGGTGGTACAGCATGCCC GCGCCCAGCACGTGAGGCTCCTGGTGGATGCTGAGTACACCTCGCTGAACCCTACACTCT CTCTGCTGGTGGCCGCCCTGGCTGTGCGCTGGAACAGCCCCAGGGAAGGCGGGCCCTGGG TGTGGAACACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 39-158, - strand, RNAz p=0.547064 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-158, - strand, RNAz p=0.547064 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-269, gnl|bosTau2|chr18 (41644871-41644603) | |
| 1-269, gnl|canFam2|chr1 (119741014-119740780) | |
| 1-269, gnl|danRer3|chr12 (948336-948578) | |
| 1-269, gnl|dasNov1|scaffold_268890 (1139-1372) | |
| 1-269, gnl|echTel1|scaffold_201668 (2799-3033) | |
| 1-269, gnl|hg17|chr19 (40995367-40995600) | |
| 1-269, gnl|Hg17|chr19 (40995642-40995374) | |
| 1-269, gnl|mm7|chr7 (27435089-27434855) | |
| 1-269, gnl|Mm7|chr7 (27434811-27435080) | |
| 1-269, gnl|monDom2|scaffold_139 (1931806-1932067) | |
| 1-269, gnl|panTro1|chr20 (37832439-37832672) | |
| 1-269, gnl|rheMac2|chr19 (42289309-42289542) | |
| 1-269, gnl|rn3|chr1 (85624317-85624083) | |
| 468-605, gnl|bosTau2|chr18 (41644235-41644098) | |
| 468-605, gnl|canFam2|chr1 (119741529-119741407) | |
| 468-605, gnl|danRer3|chr12 (944087-944177) | |
| 468-605, gnl|dasNov1|scaffold_268890 (632-756) | |
| 468-605, gnl|fr1|chrUn (113185062-113184969) | |
| 468-605, gnl|hg17|chr19 (40994853-40994977) | |
| 468-605, gnl|Hg17|chr19 (40995013-40994876) | |
| 468-605, gnl|mm7|chr7 (27435599-27435474) | |
| 468-605, gnl|Mm7|chr7 (27435436-27435573) | |
| 468-605, gnl|monDom2|scaffold_139 (1931208-1931329) | |
| 468-605, gnl|panTro1|chr20 (37831929-37832053) | |
| 468-605, gnl|rheMac2|chr19 (42288795-42288919) | |
| 468-605, gnl|rn3|chr1 (85624835-85624710) | |
| 468-605, gnl|tetNig1|chr15 (6887282-6887180) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-269, gnl|bosTau2|chr18 (41644871-41644603) | |
| 1-269, gnl|canFam2|chr1 (119741014-119740780) | |
| 1-269, gnl|danRer3|chr12 (948336-948578) | |
| 1-269, gnl|dasNov1|scaffold_268890 (1139-1372) | |
| 1-269, gnl|echTel1|scaffold_201668 (2799-3033) | |
| 1-269, gnl|hg17|chr19 (40995367-40995600) | |
| 1-269, gnl|Hg17|chr19 (40995642-40995374) | |
| 1-269, gnl|mm7|chr7 (27435089-27434855) | |
| 1-269, gnl|Mm7|chr7 (27434811-27435080) | |
| 1-269, gnl|monDom2|scaffold_139 (1931806-1932067) | |
| 1-269, gnl|panTro1|chr20 (37832439-37832672) | |
| 1-269, gnl|rheMac2|chr19 (42289309-42289542) | |
| 1-269, gnl|rn3|chr1 (85624317-85624083) | |
| 468-605, gnl|bosTau2|chr18 (41644235-41644098) | |
| 468-605, gnl|canFam2|chr1 (119741529-119741407) | |
| 468-605, gnl|danRer3|chr12 (944087-944177) | |
| 468-605, gnl|dasNov1|scaffold_268890 (632-756) | |
| 468-605, gnl|fr1|chrUn (113185062-113184969) | |
| 468-605, gnl|hg17|chr19 (40994853-40994977) | |
| 468-605, gnl|Hg17|chr19 (40995013-40994876) | |
| 468-605, gnl|mm7|chr7 (27435599-27435474) | |
| 468-605, gnl|Mm7|chr7 (27435436-27435573) | |
| 468-605, gnl|monDom2|scaffold_139 (1931208-1931329) | |
| 468-605, gnl|panTro1|chr20 (37831929-37832053) | |
| 468-605, gnl|rheMac2|chr19 (42288795-42288919) | |
| 468-605, gnl|rn3|chr1 (85624835-85624710) | |
| 468-605, gnl|tetNig1|chr15 (6887282-6887180) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| cli (0.152812) |