Ss1.1-Liv1-LVR010021A02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGGTCAGGGCTACGGACCAGACTTGGCCTCTGCCTACAGTGGCCCCCACTCCTCCAGC CTCACCCAGCATCATGAGCGGCAGAGTCGGAGACCTGAGCCCCAAGCAGGCAGAGACCCT GGCCAAGTTCAGAGAAAATGTCCAAGACGTGTTGCCTGCGCTGCCCAACCCAGATGACTA TTTCCTTCTGCGCTGGCTCCGAGCTCGGAACTTTGACCTGCAGAAATCAGAGGCCATGCT CCGCAAGTACATGGAGTTCCGGAAGACCATGGACATCGACCACATCCTTGATTGGCAGCC CCCTGAGGTGATCCAGAAGTACATGCCTGGGGGACTGTGCGGCTATGACCGTGACGGCTG CCCTGTGTGGTATGACATCATCGGGCCACTTGACCCCAAGGGCCTGCTCTTCTCGGTCAC CAAGCAGGACCTGCTCAAGACCAAGATGAGGGACTGTGAGCGCATCTTGCATGAATGTGA CCTGCAGACAGAGCGGCTGGGGAGGAAAATTGAGACCATCGTGATGATATTTGACTGTGA AGGCCTGGGACTAAAGCACTTCTGGAAACCTCTGGTAGAAGTGTACCAGGAGTTCTTTGG CCTCCTTGAAGAGAACTACCCAGAGACCCTGAAGTTTATGCTCATTGTGAAAGCCACCAA ATTGTTCCCTGTGGGATACAACCTCATGAAGCCCTTCTTGAGTGAGGATACTCGCAGAAA AATTATAGTGTTGGGAAACAACTGGAAAGAAGGTTTGCTAAAACTCATCAGTCCTGAGGA ACTGCCTGCCCAGTTTGGGGGGACCCTGACTGACCCAGATGGGAACCCCAAATGTTTAAC TAAGATCAACTATGGTGGGGAGATCCCCAAGTCCATGTACGTGCGGGACCAAGTGAAGAC TCAGTATGAGCACTCGGTGCAGATCAGCCGTGGCTCGTCGCACCAGGTGGAGTATGAGAT CCTGTTCCCAGGCTGTGTCCTCAGGTGGCAGTTCTCATCTGATGGTGCAGATATTGGCTT TGGGGTTTTCCTGAAGACCAAGATGGGGGAACGGCAGCGGGCTGGGGAGATGACAGAGGT GCTGCCTAGCCAGCGCTACAATGCCCACATGGTACCAGAGGATGGAAGCCTCACCTGCAC AGAAGCTGGAGTCTACGTCCTGCGTTTCGACAACACCTATAGCTTTGTCCATGCCAAGAA GGTCAGCTTCACAGTGGAGGTGCTACTCCCGGATGAGGGCATGCAGAAATATGACGAAGA ACTTACCCCTGTCTAGGCAGCTCCCTCACTTTCCAGAGACCCCTGACCTCTGCTTTCCCT ATATATATCCTGATCTCCCTCCAGAAATTACTCACTAGTTCTCTTCACTCTGTGACACTA GTGAGTAAACGGTTGCCTTGGGGAAGACTCATATGTTGTGGTAAGATTAGGAAAGGTATG AAAGGAGTGGCCTTGGAGGATGCCAAGATTGCAGAAAAGGAAGAAGCCAAAGGTAAAAGC AAGAGGTAGATGTCCCTGAAACCCAAAAACTAGGAGGATGAATCTCCTAGTCTTTGTCTT CACTTCTCCTAAGGCATTTATGTGTTGCTTGAATTCCTTCCCTATGAGTTGTAAGCATCT TGGCTTGGAGATGTATCTACATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGGTCAGGGCTACGGACCAGACTTGGCCTCTGCCTACAGTGGCCCCCACTCCTCCAGC CTCACCCAGCATCATGAGCGGCAGAGTCGGAGACCTGAGCCCCAAGCAGGCAGAGACCCT GGCCAAGTTCAGAGAAAATGTCCAAGACGTGTTGCCTGCGCTGCCCAACCCAGATGACTA TTTCCTTCTGCGCTGGCTCCGAGCTCGGAACTTTGACCTGCAGAAATCAGAGGCCATGCT CCGCAAGTACATGGAGTTCCGGAAGACCATGGACATCGACCACATCCTTGATTGGCAGCC CCCTGAGGTGATCCAGAAGTACATGCCTGGGGGACTGTGCGGCTATGACCGTGACGGCTG CCCTGTGTGGTATGACATCATCGGGCCACTTGACCCCAAGGGCCTGCTCTTCTCGGTCAC CAAGCAGGACCTGCTCAAGACCAAGATGAGGGACTGTGAGCGCATCTTGCATGAATGTGA CCTGCAGACAGAGCGGCTGGGGAGGAAAATTGAGACCATCGTGATGATATTTGACTGTGA AGGCCTGGGACTAAAGCACTTCTGGAAACCTCTGGTAGAAGTGTACCAGGAGTTCTTTGG CCTCCTTGAAGAGAACTACCCAGAGACCCTGAAGTTTATGCTCATTGTGAAAGCCACCAA ATTGTTCCCTGTGGGATACAACCTCATGAAGCCCTTCTTGAGTGAGGATACTCGCAGAAA AATTATAGTGTTGGGAAACAACTGGAAAGAAGGTTTGCTAAAACTCATCAGTCCTGAGGA ACTGCCTGCCCAGTTTGGGGGGACCCTGACTGACCCAGATGGGAACCCCAAATGTTTAAC TAAGATCAACTATGGTGGGGAGATCCCCAAGTCCATGTACGTGCGGGACCAAGTGAAGAC TCAGTATGAGCACTCGGTGCAGATCAGCCGTGGCTCGTCGCACCAGGTGGAGTATGAGAT CCTGTTCCCAGGCTGTGTCCTCAGGTGGCAGTTCTCATCTGATGGTGCAGATATTGGCTT TGGGGTTTTCCTGAAGACCAAGATGGGGGAACGGCAGCGGGCTGGGGAGATGACAGAGGT GCTGCCTAGCCAGCGCTACAATGCCCACATGGTACCAGAGGATGGAAGCCTCACCTGCAC AGAAGCTGGAGTCTACGTCCTGCGTTTCGACAACACCTATAGCTTTGTCCATGCCAAGAA GGTCAGCTTCACAGTGGAGGTGCTACTCCCGGATGAGGGCATGCAGAAATATGACGAAGA ACTTACCCCTGTCTAGGCAGCTCCCTCACTTTCCAGAGACCCCTGACCTCTGCTTTCCCT ATATATATCCTGATCTCCCTCCAGAAATTACTCACTAGTTCTCTTCACTCTGTGACACTA GTGAGTAAACGGTTGCCTTGGGGAAGACTCATATGTTGTGGTAAGATTAGGAAAGGTATG AAAGGAGTGGCCTTGGAGGATGCCAAGATTGCAGAAAAGGAAGAAGCCAAAGGTAAAAGC AAGAGGTAGATGTCCCTGAAACCCAAAAACTAGGAGGATGAATCTCCTAGTCTTTGTCTT CACTTCTCCTAAGGCATTTATGTGTTGCTTGAATTCCTTCCCTATGAGTTGTAAGCATCT TGGCTTGGAGATGTATCTACATTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 390-1581, - strand, RNAz p=0.998014 | |
| 843-961, + strand, RNAz p=0.864711 | |
| 1194-1345, - strand, RNAz p=0.999968 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 390-1581, - strand, RNAz p=0.998014 | |
| 843-961, + strand, RNAz p=0.864711 | |
| 1194-1345, - strand, RNAz p=0.999968 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr17 (42657154-42657023) | |
| 1-132, gnl|Hg17|chr22 (29192574-29192441) | |
| 1-132, gnl|Mm7|chr11 (4016879-4017013) | |
| 270-502, gnl|bosTau2|chr17 (42654468-42654236) | |
| 270-502, gnl|Hg17|chr22 (29189275-29189004) | |
| 270-502, gnl|Mm7|chr11 (4019929-4020153) | |
| 843-986, gnl|bosTau2|chr17 (42649500-42649357) | |
| 843-986, gnl|canFam2|chr26 (26612354-26612549) | |
| 843-986, gnl|danRer3|chr5 (4007327-4007180) | |
| 843-986, gnl|dasNov1|scaffold_195892 (276-82) | |
| 843-986, gnl|echTel1|scaffold_275061 (3840-3652) | |
| 843-986, gnl|fr1|chrUn (161609527-161609370) | |
| 843-986, gnl|galGal2|chr15 (10690310-10690478) | |
| 843-986, gnl|hg17|chr22 (29182087-29182258) | |
| 843-986, gnl|Hg17|chr22 (29182237-29182094) | |
| 843-986, gnl|loxAfr1|scaffold_5162 (21724-21919) | |
| 843-986, gnl|mm7|chr11 (4027342-4027168) | |
| 843-986, gnl|Mm7|chr11 (4027167-4027310) | |
| 843-986, gnl|monDom2|scaffold_89 (4783755-4783944) | |
| 843-986, gnl|oryCun1|scaffold_191315 (3973-4168) | |
| 843-986, gnl|panTro1|chr23 (29268857-29269029) | |
| 843-986, gnl|rheMac2|chr10 (74316484-74316655) | |
| 843-986, gnl|rn3|chr14 (84727849-84727671) | |
| 843-986, gnl|tetNig1|chr12 (3700632-3700787) | |
| 843-986, gnl|xenTro1|scaffold_207 (982801-982648) | |
| 1155-1644, gnl|bosTau2|chr17 (42648225-42647733) | |
| 1155-1644, gnl|Hg17|chr22 (29180683-29180187) | |
| 1155-1644, gnl|Mm7|chr11 (4028249-4028711) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr17 (42657154-42657023) | |
| 1-132, gnl|Hg17|chr22 (29192574-29192441) | |
| 1-132, gnl|Mm7|chr11 (4016879-4017013) | |
| 270-502, gnl|bosTau2|chr17 (42654468-42654236) | |
| 270-502, gnl|Hg17|chr22 (29189275-29189004) | |
| 270-502, gnl|Mm7|chr11 (4019929-4020153) | |
| 843-986, gnl|bosTau2|chr17 (42649500-42649357) | |
| 843-986, gnl|canFam2|chr26 (26612354-26612549) | |
| 843-986, gnl|danRer3|chr5 (4007327-4007180) | |
| 843-986, gnl|dasNov1|scaffold_195892 (276-82) | |
| 843-986, gnl|echTel1|scaffold_275061 (3840-3652) | |
| 843-986, gnl|fr1|chrUn (161609527-161609370) | |
| 843-986, gnl|galGal2|chr15 (10690310-10690478) | |
| 843-986, gnl|hg17|chr22 (29182087-29182258) | |
| 843-986, gnl|Hg17|chr22 (29182237-29182094) | |
| 843-986, gnl|loxAfr1|scaffold_5162 (21724-21919) | |
| 843-986, gnl|mm7|chr11 (4027342-4027168) | |
| 843-986, gnl|Mm7|chr11 (4027167-4027310) | |
| 843-986, gnl|monDom2|scaffold_89 (4783755-4783944) | |
| 843-986, gnl|oryCun1|scaffold_191315 (3973-4168) | |
| 843-986, gnl|panTro1|chr23 (29268857-29269029) | |
| 843-986, gnl|rheMac2|chr10 (74316484-74316655) | |
| 843-986, gnl|rn3|chr14 (84727849-84727671) | |
| 843-986, gnl|tetNig1|chr12 (3700632-3700787) | |
| 843-986, gnl|xenTro1|scaffold_207 (982801-982648) | |
| 1155-1644, gnl|bosTau2|chr17 (42648225-42647733) | |
| 1155-1644, gnl|Hg17|chr22 (29180683-29180187) | |
| 1155-1644, gnl|Mm7|chr11 (4028249-4028711) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| cmu (0.186393) | |
| ova (0.129132) |