Ss1.1-Liv1-LVR010021H02.5
|
ACTTGGTGAGCTGCCGGACAGCTGCTGCCCAGAGCTGACCGCGACGCAGGTGGACCATGT
GGACCCTGGTGAGCTGGGTGGCCTTGGTGACAGGGCTGGTGGCTGGAACACAGTGCCCGG
ATGGTCAGCTCTGCCCCGTGGCCTGCTGCCTGGACCCGGGAGGAGCCAGCTACAGCTGCT
GCAATCCCGTTCCGGACAAGTGGCCCAAGGCACTGAGCCAGCATCTGGGCGTACCCTGCA
AGACTAAAGCCCAGTGCCCTCCTGGCCACTCCTGCATCCTCACCACCAATGAGACCTCCA
ACTGCTGCCCGTTCCCAGAGGCCGTGTCATGCAGGGATGGCCTCCACTGCTGCCCGCAGG
GCTTCCACTGCAGTGCTGATGGGTGGTCCTGCCTCCGAAGACCAGATACCAAGCCCTCGG
ATGACATCCTGTGCCCCAACAGCCAGTTCCATTGCCCCAACTCCTCCACGTGCTGCACTA
TGCTTGACGGCTCCTGGGGCTGCTGCCCCATGCCCCAGGCTTCCTGCTGTGGAGACAAGG
TGCACTGCTGCCCCCACGGCACCTCCTGTGACCTGGCCCATTCCCGCTGCCTCACAGTGA
CCAACACCCACCCCATGGCAAAGATCCCTTCACAAGAGACTATAAAGACAGCCGTCCAGT
GCCCAGATGCAGAGTCCCAGTGCCACAATAATTCCACCTGCTGCAAGCTGTCCAGTGGAA
AGTATGGCTGCTGCCCGTTGCCCAATGCCACCTGCTGCTCCGATCACATACACTGCTGCC
CCCACGGCTTTGTGTGTGACCCGGTCAAGAAGAAGTGCTTCTCCAAGGAGAATGAAGCCA
TAGACTTCTTCACCAAGTTGCCAGCGCACTCAGTGCAGGAGGTGAAGTGTGACACAGAGG
TGAGCTGCCCGGACGACTACACCTGCTGCCGCCTGCAGTCCGGAAAATGGGGCTGCTGCC
CTTTTGTCCAGGCTGTCTGCTGTAACGACCACGTACACTGCTGCCCGACCGGATATCAGT
GTAACATAGAGAAGGGCACCTGTGACCTGGAGACCCAGTGGGTGCCCTGGAAGGAGAAGA
TCCCGGCCAGCCTCAGCCGGCCGGACCTCCTAGCCATGGAGAGAGATGTCCCCTGTGATA
ACGTCTCCAGCTGTCCCTCCTCCAGTACCTGCTGTCCAGTCACGCCTGGAGAGTGGGGCT
GCTGTCCTGCCCCAGAGGCTGTCTGCTGCTCGGACCACCAGTACTGCTGCCCCAAGGGCC
ACACGTGTGTCGGCAAGGGACACTGTAAGAGGAAGAAGGACATGGTGACCGGACTGAACA
AGATGCCCACCCGCCGGGCTTCCGCGTCCCAGCCCGGAAACACCACGGGCTGTGACCAGC
ACACCAGTTGCCCGGTGGGGCAGACCTGCTGCCCGAGCCTGAGCAAGGGCTGGGCCTGCT
GCCAGCTGCCCCACGCCGTGTGCTGTGAGGACCGCCAGCACTGCTGCCCGGCTGGCTACA
CCTGCAACGTGAAGGCCCGAACATGTGAGAAGGAGGAGGACTCTGCCCTCCCTGCCACCC
ACCTGGCCCGTGTGGGCGACGTGGCGTGTGGGGAACGGCGCTTCTGCCACAACAACTATA
CCTGCTGCCGAGACAGTCTTGGAGGCTGGGCCTGCTGTCCCTACCGCCAGGGCATCTGTT
GTGCAGACGGGCGTCACTGCTGCCCGGCAGGCTTCCGCTGTGGGGCCAGGGGCACCAAGT
GCTTGCACAAGGAGGCCCTGCGCTGGGACGCTCCTCTGAGGGACCCGGCTCCAAGACAGC
TGCTGTGAGGAGGGCCCGAAGACACTCCGCAGCCCTCGGGACCCTGCTCGGAGGGTGCCC
ACTGCTCAGGCCTCCCCAGCACCTCTCCCTCACTGAATTCTCCAGAACCCCCCTTCTGAG
TTCCCCCCATCACCCTAGAAGGTGGGGCCTCAATTTAAGGTCCTCCCTATTGGAAGGGGG
GGCTGTGGCGAAGGCCACAGTTCAAGCTGCCATCCCCTCCCCCCGATTTTAGTGGACCCC
GTGGCCAGGTGCTCTTCCCTATCCACGGGGGGTGGTGTGTGTGCGTGTGTGTGTGTGTGT
GTGCGCTGCAATAAAGTTTGTACACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTTGGTGAGCTGCCGGACAGCTGCTGCCCAGAGCTGACCGCGACGCAGGTGGACCATGT
GGACCCTGGTGAGCTGGGTGGCCTTGGTGACAGGGCTGGTGGCTGGAACACAGTGCCCGG
ATGGTCAGCTCTGCCCCGTGGCCTGCTGCCTGGACCCGGGAGGAGCCAGCTACAGCTGCT
GCAATCCCGTTCCGGACAAGTGGCCCAAGGCACTGAGCCAGCATCTGGGCGTACCCTGCA
AGACTAAAGCCCAGTGCCCTCCTGGCCACTCCTGCATCCTCACCACCAATGAGACCTCCA
ACTGCTGCCCGTTCCCAGAGGCCGTGTCATGCAGGGATGGCCTCCACTGCTGCCCGCAGG
GCTTCCACTGCAGTGCTGATGGGTGGTCCTGCCTCCGAAGACCAGATACCAAGCCCTCGG
ATGACATCCTGTGCCCCAACAGCCAGTTCCATTGCCCCAACTCCTCCACGTGCTGCACTA
TGCTTGACGGCTCCTGGGGCTGCTGCCCCATGCCCCAGGCTTCCTGCTGTGGAGACAAGG
TGCACTGCTGCCCCCACGGCACCTCCTGTGACCTGGCCCATTCCCGCTGCCTCACAGTGA
CCAACACCCACCCCATGGCAAAGATCCCTTCACAAGAGACTATAAAGACAGCCGTCCAGT
GCCCAGATGCAGAGTCCCAGTGCCACAATAATTCCACCTGCTGCAAGCTGTCCAGTGGAA
AGTATGGCTGCTGCCCGTTGCCCAATGCCACCTGCTGCTCCGATCACATACACTGCTGCC
CCCACGGCTTTGTGTGTGACCCGGTCAAGAAGAAGTGCTTCTCCAAGGAGAATGAAGCCA
TAGACTTCTTCACCAAGTTGCCAGCGCACTCAGTGCAGGAGGTGAAGTGTGACACAGAGG
TGAGCTGCCCGGACGACTACACCTGCTGCCGCCTGCAGTCCGGAAAATGGGGCTGCTGCC
CTTTTGTCCAGGCTGTCTGCTGTAACGACCACGTACACTGCTGCCCGACCGGATATCAGT
GTAACATAGAGAAGGGCACCTGTGACCTGGAGACCCAGTGGGTGCCCTGGAAGGAGAAGA
TCCCGGCCAGCCTCAGCCGGCCGGACCTCCTAGCCATGGAGAGAGATGTCCCCTGTGATA
ACGTCTCCAGCTGTCCCTCCTCCAGTACCTGCTGTCCAGTCACGCCTGGAGAGTGGGGCT
GCTGTCCTGCCCCAGAGGCTGTCTGCTGCTCGGACCACCAGTACTGCTGCCCCAAGGGCC
ACACGTGTGTCGGCAAGGGACACTGTAAGAGGAAGAAGGACATGGTGACCGGACTGAACA
AGATGCCCACCCGCCGGGCTTCCGCGTCCCAGCCCGGAAACACCACGGGCTGTGACCAGC
ACACCAGTTGCCCGGTGGGGCAGACCTGCTGCCCGAGCCTGAGCAAGGGCTGGGCCTGCT
GCCAGCTGCCCCACGCCGTGTGCTGTGAGGACCGCCAGCACTGCTGCCCGGCTGGCTACA
CCTGCAACGTGAAGGCCCGAACATGTGAGAAGGAGGAGGACTCTGCCCTCCCTGCCACCC
ACCTGGCCCGTGTGGGCGACGTGGCGTGTGGGGAACGGCGCTTCTGCCACAACAACTATA
CCTGCTGCCGAGACAGTCTTGGAGGCTGGGCCTGCTGTCCCTACCGCCAGGGCATCTGTT
GTGCAGACGGGCGTCACTGCTGCCCGGCAGGCTTCCGCTGTGGGGCCAGGGGCACCAAGT
GCTTGCACAAGGAGGCCCTGCGCTGGGACGCTCCTCTGAGGGACCCGGCTCCAAGACAGC
TGCTGTGAGGAGGGCCCGAAGACACTCCGCAGCCCTCGGGACCCTGCTCGGAGGGTGCCC
ACTGCTCAGGCCTCCCCAGCACCTCTCCCTCACTGAATTCTCCAGAACCCCCCTTCTGAG
TTCCCCCCATCACCCTAGAAGGTGGGGCCTCAATTTAAGGTCCTCCCTATTGGAAGGGGG
GGCTGTGGCGAAGGCCACAGTTCAAGCTGCCATCCCCTCCCCCCGATTTTAGTGGACCCC
GTGGCCAGGTGCTCTTCCCTATCCACGGGGGGTGGTGTGTGTGCGTGTGTGTGTGTGTGT
GTGCGCTGCAATAAAGTTTGTACACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
46-228, gnl|bosTau2|chr19 (37963854-37963674) |
|
46-228, gnl|canFam2|chr9 (22399517-22399328) |
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46-228, gnl|dasNov1|scaffold_247420 (1102-926) |
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46-228, gnl|hg17|chr17 (39782034-39782223) |
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46-228, gnl|Hg17|chr17 (39782048-39782227) |
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46-228, gnl|loxAfr1|scaffold_33549 (19996-20180) |
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46-228, gnl|mm7|chr11 (102541987-102542168) |
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46-228, gnl|Mm7|chr11 (102542000-102542172) |
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46-228, gnl|monDom2|scaffold_18 (42360432-42360242) |
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46-228, gnl|oryCun1|scaffold_203939 (2334-2507) |
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46-228, gnl|panTro1|chr19 (42996046-42996235) |
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46-228, gnl|rheMac2|chr16 (54447421-54447610) |
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46-228, gnl|rn3|chr10 (91552871-91553052) |
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46-228, gnl|xenTro1|scaffold_4190 (9042-8828) |
| |
|
403-519, gnl|bosTau2|chr19 (37962571-37962455) |
|
403-519, gnl|Hg17|chr17 (39783119-39783235) |
|
403-519, gnl|Mm7|chr11 (102542972-102543085) |
| |
|
871-972, gnl|bosTau2|chr19 (37961382-37961281) |
|
871-972, gnl|Hg17|chr17 (39784254-39784355) |
|
871-972, gnl|Mm7|chr11 (102544095-102544196) |
| |
|
1216-1455, gnl|bosTau2|chr19 (37960718-37960482) |
|
1216-1455, gnl|Hg17|chr17 (39784907-39785143) |
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1216-1455, gnl|Mm7|chr11 (102544746-102544982) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
46-228, gnl|bosTau2|chr19 (37963854-37963674) |
|
46-228, gnl|canFam2|chr9 (22399517-22399328) |
|
46-228, gnl|dasNov1|scaffold_247420 (1102-926) |
|
46-228, gnl|hg17|chr17 (39782034-39782223) |
|
46-228, gnl|Hg17|chr17 (39782048-39782227) |
|
46-228, gnl|loxAfr1|scaffold_33549 (19996-20180) |
|
46-228, gnl|mm7|chr11 (102541987-102542168) |
|
46-228, gnl|Mm7|chr11 (102542000-102542172) |
|
46-228, gnl|monDom2|scaffold_18 (42360432-42360242) |
|
46-228, gnl|oryCun1|scaffold_203939 (2334-2507) |
|
46-228, gnl|panTro1|chr19 (42996046-42996235) |
|
46-228, gnl|rheMac2|chr16 (54447421-54447610) |
|
46-228, gnl|rn3|chr10 (91552871-91553052) |
|
46-228, gnl|xenTro1|scaffold_4190 (9042-8828) |
| |
|
403-519, gnl|bosTau2|chr19 (37962571-37962455) |
|
403-519, gnl|Hg17|chr17 (39783119-39783235) |
|
403-519, gnl|Mm7|chr11 (102542972-102543085) |
| |
|
871-972, gnl|bosTau2|chr19 (37961382-37961281) |
|
871-972, gnl|Hg17|chr17 (39784254-39784355) |
|
871-972, gnl|Mm7|chr11 (102544095-102544196) |
| |
|
1216-1455, gnl|bosTau2|chr19 (37960718-37960482) |
|
1216-1455, gnl|Hg17|chr17 (39784907-39785143) |
|
1216-1455, gnl|Mm7|chr11 (102544746-102544982) |
|
ute (14.7391) |
|
clu (1.43575) |
|
cov (0.925069) |
|
cly (0.723851) |
|
lnt (0.711541) |
|
jca (0.569801) |
|
csp (0.483559) |
|
mas (0.42061) |
|
nmm (0.398406) |
|
mcp (0.341297) |
|
nje (0.33184) |
|
eje (0.296501) |
|
med (0.232504) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
eli (0.151814) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
nca (0.136874) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
ute (14.7391) |
|
clu (1.43575) |
|
cov (0.925069) |
|
cly (0.723851) |
|
lnt (0.711541) |
|
jca (0.569801) |
|
csp (0.483559) |
|
mas (0.42061) |
|
nmm (0.398406) |
|
mcp (0.341297) |
|
nje (0.33184) |
|
eje (0.296501) |
|
med (0.232504) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
eli (0.151814) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
nca (0.136874) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
