Ss1.1-Liv1-LVR010021H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGGATAGCCCTGGGAACCACGGAAAGTCGGCATTCTGGAAGGTCTCTGTAGGAAAATA ATTGCCTGATCAGTGTGGCGTGGGTCTTGTACATTGCGAAGAGATGAATGGGAAACGGTC GACTGAGCTTGGCCCTGGTCGGGCGGGAAAAAAAGTAAAGAAGGAGGTGATGGCGAATAT TTCGGATGCTGTCACGGAGGAAACCTTGAAAAAGCAGGTGGCTGAGGCCTGGAGTCGTAG GACGCCGTTCCGTCACGAAGCCATTGTTATGGACATGGACCCCTTTCTTCACTGCGTGAT CCCAAACTTCATCCAAAGCCAAAGCTTCTTGGAAGGACTTCAGAAGGAACTTTTGAACTT GGACTTCCATGAAAAGTATAACGATTTATATAAGTTCCAACAGTCTGATGATTTGAAGAA AAGAAGAGAGCCTCACATCTGTGCTTTAAGGAAAATTCTGTTTGAACATTTCCGGGCTTG GCTTTCTGACATTTCCAAGATTGATCTGGAATCAACCATTGACATGTCTTGTGCTAAATA TGAATTTTCAGATGCTCTGCTCTGCCATGATGACGAGCTGGAAGGGCGCCGGATCGCCTT CATTCTTTACCTGGTTCCTCCCTGGGACAGGAGCCTGGGGGGCACCTTGGACATGTACAG TGTTGATGAGCACTTTCAGCCGAAGCAGATTGTCAAGTCCCTTATCCCATCATGGAACAC ACTGGTTTTCTTCGAAGTATCTCCAATATCCTTTCACCAGGTGTCTGAAGTCCTGTCTGA AGAGAAGTCTCGTTTGTCTATCAGTGGCTGGTTTCATGGTCCTTCGCTGACCAGGCCTCC CACCTACTTTGAACCTCTCCTACCTCGGAGCCCTCACATCCCACAAGATCATGAAGTTTT GTATGACTGGATCAACCCTACTTATCTTGACATGGAATACCAAGTTCAAATACAAGAAGA ATTTGAAGAAAGCTCCGAAATTCTCCTAAAAGAGTTCCTTAAGCCTGAGAAATTTGCAGA GGTGTGTGAGGCTTTGGAGAAAGGAGATGTGGAATGCTGGGTAGGTGAACAGTATCACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGGATAGCCCTGGGAACCACGGAAAGTCGGCATTCTGGAAGGTCTCTGTAGGAAAATA ATTGCCTGATCAGTGTGGCGTGGGTCTTGTACATTGCGAAGAGATGAATGGGAAACGGTC GACTGAGCTTGGCCCTGGTCGGGCGGGAAAAAAAGTAAAGAAGGAGGTGATGGCGAATAT TTCGGATGCTGTCACGGAGGAAACCTTGAAAAAGCAGGTGGCTGAGGCCTGGAGTCGTAG GACGCCGTTCCGTCACGAAGCCATTGTTATGGACATGGACCCCTTTCTTCACTGCGTGAT CCCAAACTTCATCCAAAGCCAAAGCTTCTTGGAAGGACTTCAGAAGGAACTTTTGAACTT GGACTTCCATGAAAAGTATAACGATTTATATAAGTTCCAACAGTCTGATGATTTGAAGAA AAGAAGAGAGCCTCACATCTGTGCTTTAAGGAAAATTCTGTTTGAACATTTCCGGGCTTG GCTTTCTGACATTTCCAAGATTGATCTGGAATCAACCATTGACATGTCTTGTGCTAAATA TGAATTTTCAGATGCTCTGCTCTGCCATGATGACGAGCTGGAAGGGCGCCGGATCGCCTT CATTCTTTACCTGGTTCCTCCCTGGGACAGGAGCCTGGGGGGCACCTTGGACATGTACAG TGTTGATGAGCACTTTCAGCCGAAGCAGATTGTCAAGTCCCTTATCCCATCATGGAACAC ACTGGTTTTCTTCGAAGTATCTCCAATATCCTTTCACCAGGTGTCTGAAGTCCTGTCTGA AGAGAAGTCTCGTTTGTCTATCAGTGGCTGGTTTCATGGTCCTTCGCTGACCAGGCCTCC CACCTACTTTGAACCTCTCCTACCTCGGAGCCCTCACATCCCACAAGATCATGAAGTTTT GTATGACTGGATCAACCCTACTTATCTTGACATGGAATACCAAGTTCAAATACAAGAAGA ATTTGAAGAAAGCTCCGAAATTCTCCTAAAAGAGTTCCTTAAGCCTGAGAAATTTGCAGA GGTGTGTGAGGCTTTGGAGAAAGGAGATGTGGAATGCTGGGTAGGTGAACAGTATCACTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 102 entry(ies) | More info |
| Aligned organism(s): 102 entry(ies) | Help | Less info |
| 1-257, gnl|bosTau2|chr18 (23930107-23930370) | |
| 1-257, gnl|canFam2|chr2 (62615836-62615999) | |
| 1-257, gnl|canFam2|chr2 (62615556-62616001) | |
| 1-257, gnl|dasNov1|scaffold_5232 (74150-74313) | |
| 1-257, gnl|dasNov1|scaffold_5232 (73875-74318) | |
| 1-257, gnl|hg17|chr13 (48684297-48684459) | |
| 1-257, gnl|Hg17|chr16 (55042918-55043179) | |
| 1-257, gnl|hg17|chr4 (178176373-178176817) | |
| 1-257, gnl|loxAfr1|scaffold_4408 (31617-31780) | |
| 1-257, gnl|loxAfr1|scaffold_4408 (31342-31784) | |
| 1-257, gnl|mm7|chr2 (92982158-92982310) | |
| 1-257, gnl|mm7|chr8 (92626675-92626311) | |
| 1-257, gnl|Mm7|chr8 (92626226-92626486) | |
| 1-257, gnl|monDom2|scaffold_0 (45407028-45407243) | |
| 1-257, gnl|oryCun1|scaffold_198557 (98747-98915) | |
| 1-257, gnl|oryCun1|scaffold_198557 (98501-98912) | |
| 1-257, gnl|panTro1|chr14_random (14747641-14747821) | |
| 1-257, gnl|panTro1|chr3 (196163260-196163710) | |
| 1-257, gnl|rheMac2|chr17 (28027149-28027337) | |
| 1-257, gnl|rheMac2|chr5 (169000158-169000607) | |
| 1-257, gnl|rn3|chr19 (11417111-11417279) | |
| 1-257, gnl|rn3|chr19 (11416895-11417268) | |
| 546-668, gnl|bosTau2|chr18 (23952834-23952956) | |
| 546-668, gnl|canFam2|chr2 (62603108-62602957) | |
| 546-668, gnl|canFam2|chr2 (62602987-62603102) | |
| 546-668, gnl|danRer3|chr19 (32396497-32396341) | |
| 546-668, gnl|danRer3|chr19 (32396372-32396497) | |
| 546-668, gnl|dasNov1|scaffold_135264 (3665-3816) | |
| 546-668, gnl|dasNov1|scaffold_135264 (3787-3671) | |
| 546-668, gnl|echTel1|scaffold_273646 (3697-3546) | |
| 546-668, gnl|echTel1|scaffold_273646 (3575-3692) | |
| 546-668, gnl|fr1|chrUn (298597290-298597148) | |
| 546-668, gnl|fr1|chrUn (298597169-298597294) | |
| 546-668, gnl|galGal2|chr11 (2050326-2050149) | |
| 546-668, gnl|hg17|chr13 (48683893-48684015) | |
| 546-668, gnl|hg17|chr16 (55057560-55057717) | |
| 546-668, gnl|Hg17|chr16 (55057559-55057681) | |
| 546-668, gnl|loxAfr1|scaffold_4408 (17341-17190) | |
| 546-668, gnl|loxAfr1|scaffold_4408 (17219-17335) | |
| 546-668, gnl|mm7|chr8 (92643644-92643790) | |
| 546-668, gnl|mm7|chr8 (92643764-92643643) | |
| 546-668, gnl|Mm7|chr8 (92643642-92643764) | |
| 546-668, gnl|monDom2|scaffold_0 (45406616-45406738) | |
| 546-668, gnl|monDom2|scaffold_35 (23095157-23095301) | |
| 546-668, gnl|oryCun1|scaffold_117534 (2105-1941) | |
| 546-668, gnl|oryCun1|scaffold_117534 (1977-2105) | |
| 546-668, gnl|panTro1|chr14_random (14747237-14747359) | |
| 546-668, gnl|panTro1|chr18 (49155480-49155637) | |
| 546-668, gnl|rheMac2|chr17 (28026744-28026866) | |
| 546-668, gnl|rheMac2|chr20 (54778426-54778583) | |
| 546-668, gnl|rn3|chr19 (11401838-11401692) | |
| 546-668, gnl|rn3|chr19 (11401718-11401833) | |
| 546-668, gnl|tetNig1|chr5 (5223262-5223139) | |
| 546-668, gnl|tetNig1|chr5 (5223141-5223266) | |
| 758-889, gnl|bosTau2|chr18 (23953476-23953607) | |
| 758-889, gnl|canFam2|chr2 (62602137-62601944) | |
| 758-889, gnl|danRer3|chr19 (32392909-32392727) | |
| 758-889, gnl|echTel1|scaffold_273646 (2933-2754) | |
| 758-889, gnl|fr1|chrUn (298596947-298596774) | |
| 758-889, gnl|galGal2|chr11 (2048558-2048382) | |
| 758-889, gnl|hg17|chr16 (55058546-55058741) | |
| 758-889, gnl|Hg17|chr16 (55058575-55058706) | |
| 758-889, gnl|loxAfr1|scaffold_4408 (16315-16125) | |
| 758-889, gnl|mm7|chr8 (92644548-92644744) | |
| 758-889, gnl|Mm7|chr8 (92644577-92644708) | |
| 758-889, gnl|monDom2|scaffold_35 (23096369-23096559) | |
| 758-889, gnl|oryCun1|scaffold_117534 (1065-867) | |
| 758-889, gnl|panTro1|chr18 (49156463-49156658) | |
| 758-889, gnl|rheMac2|chr20 (54779425-54779620) | |
| 758-889, gnl|rn3|chr19 (11400922-11400728) | |
| 758-889, gnl|tetNig1|chr5 (5222914-5222731) | |
| 890-1003, gnl|bosTau2|chr18 (23953860-23953973) | |
| 890-1003, gnl|canFam2|chr2 (62601707-62601583) | |
| 890-1003, gnl|canFam2|chr2 (62601604-62601708) | |
| 890-1003, gnl|danRer3|chr19 (32392565-32392665) | |
| 890-1003, gnl|dasNov1|scaffold_5232 (47423-47299) | |
| 890-1003, gnl|dasNov1|scaffold_5232 (47312-47423) | |
| 890-1003, gnl|echTel1|scaffold_273646 (2376-2252) | |
| 890-1003, gnl|echTel1|scaffold_273646 (2265-2377) | |
| 890-1003, gnl|fr1|chrUn (298596520-298596395) | |
| 890-1003, gnl|fr1|chrUn (298596401-298596499) | |
| 890-1003, gnl|galGal2|chr11 (2048033-2047908) | |
| 890-1003, gnl|hg17|chr13 (48683569-48683678) | |
| 890-1003, gnl|hg17|chr16 (55059319-55059444) | |
| 890-1003, gnl|Hg17|chr16 (55059318-55059431) | |
| 890-1003, gnl|loxAfr1|scaffold_4408 (15959-15835) | |
| 890-1003, gnl|loxAfr1|scaffold_4408 (15848-15960) | |
| 890-1003, gnl|mm7|chr8 (92645089-92645213) | |
| 890-1003, gnl|mm7|chr8 (92645200-92645088) | |
| 890-1003, gnl|Mm7|chr8 (92645088-92645201) | |
| 890-1003, gnl|monDom2|scaffold_0 (45406283-45406395) | |
| 890-1003, gnl|monDom2|scaffold_35 (23096799-23096923) | |
| 890-1003, gnl|oryCun1|scaffold_117534 (601-477) | |
| 890-1003, gnl|oryCun1|scaffold_117534 (490-602) | |
| 890-1003, gnl|panTro1|chr14_random (14746911-14747020) | |
| 890-1003, gnl|panTro1|chr18 (49157246-49157371) | |
| 890-1003, gnl|rheMac2|chr17 (28026526-28026416) | |
| 890-1003, gnl|rheMac2|chr17 (28026416-28026527) | |
| 890-1003, gnl|rn3|chr19 (11400382-11400260) | |
| 890-1003, gnl|rn3|chr19 (11400271-11400383) | |
| 890-1003, gnl|tetNig1|chr5 (5222436-5222311) | |
| 890-1003, gnl|tetNig1|chr5 (5222317-5222418) |
| Aligned organism(s): 102 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-257, gnl|bosTau2|chr18 (23930107-23930370) | |
| 1-257, gnl|canFam2|chr2 (62615836-62615999) | |
| 1-257, gnl|canFam2|chr2 (62615556-62616001) | |
| 1-257, gnl|dasNov1|scaffold_5232 (74150-74313) | |
| 1-257, gnl|dasNov1|scaffold_5232 (73875-74318) | |
| 1-257, gnl|hg17|chr13 (48684297-48684459) | |
| 1-257, gnl|Hg17|chr16 (55042918-55043179) | |
| 1-257, gnl|hg17|chr4 (178176373-178176817) | |
| 1-257, gnl|loxAfr1|scaffold_4408 (31617-31780) | |
| 1-257, gnl|loxAfr1|scaffold_4408 (31342-31784) | |
| 1-257, gnl|mm7|chr2 (92982158-92982310) | |
| 1-257, gnl|mm7|chr8 (92626675-92626311) | |
| 1-257, gnl|Mm7|chr8 (92626226-92626486) | |
| 1-257, gnl|monDom2|scaffold_0 (45407028-45407243) | |
| 1-257, gnl|oryCun1|scaffold_198557 (98747-98915) | |
| 1-257, gnl|oryCun1|scaffold_198557 (98501-98912) | |
| 1-257, gnl|panTro1|chr14_random (14747641-14747821) | |
| 1-257, gnl|panTro1|chr3 (196163260-196163710) | |
| 1-257, gnl|rheMac2|chr17 (28027149-28027337) | |
| 1-257, gnl|rheMac2|chr5 (169000158-169000607) | |
| 1-257, gnl|rn3|chr19 (11417111-11417279) | |
| 1-257, gnl|rn3|chr19 (11416895-11417268) | |
| 546-668, gnl|bosTau2|chr18 (23952834-23952956) | |
| 546-668, gnl|canFam2|chr2 (62603108-62602957) | |
| 546-668, gnl|canFam2|chr2 (62602987-62603102) | |
| 546-668, gnl|danRer3|chr19 (32396497-32396341) | |
| 546-668, gnl|danRer3|chr19 (32396372-32396497) | |
| 546-668, gnl|dasNov1|scaffold_135264 (3665-3816) | |
| 546-668, gnl|dasNov1|scaffold_135264 (3787-3671) | |
| 546-668, gnl|echTel1|scaffold_273646 (3697-3546) | |
| 546-668, gnl|echTel1|scaffold_273646 (3575-3692) | |
| 546-668, gnl|fr1|chrUn (298597290-298597148) | |
| 546-668, gnl|fr1|chrUn (298597169-298597294) | |
| 546-668, gnl|galGal2|chr11 (2050326-2050149) | |
| 546-668, gnl|hg17|chr13 (48683893-48684015) | |
| 546-668, gnl|hg17|chr16 (55057560-55057717) | |
| 546-668, gnl|Hg17|chr16 (55057559-55057681) | |
| 546-668, gnl|loxAfr1|scaffold_4408 (17341-17190) | |
| 546-668, gnl|loxAfr1|scaffold_4408 (17219-17335) | |
| 546-668, gnl|mm7|chr8 (92643644-92643790) | |
| 546-668, gnl|mm7|chr8 (92643764-92643643) | |
| 546-668, gnl|Mm7|chr8 (92643642-92643764) | |
| 546-668, gnl|monDom2|scaffold_0 (45406616-45406738) | |
| 546-668, gnl|monDom2|scaffold_35 (23095157-23095301) | |
| 546-668, gnl|oryCun1|scaffold_117534 (2105-1941) | |
| 546-668, gnl|oryCun1|scaffold_117534 (1977-2105) | |
| 546-668, gnl|panTro1|chr14_random (14747237-14747359) | |
| 546-668, gnl|panTro1|chr18 (49155480-49155637) | |
| 546-668, gnl|rheMac2|chr17 (28026744-28026866) | |
| 546-668, gnl|rheMac2|chr20 (54778426-54778583) | |
| 546-668, gnl|rn3|chr19 (11401838-11401692) | |
| 546-668, gnl|rn3|chr19 (11401718-11401833) | |
| 546-668, gnl|tetNig1|chr5 (5223262-5223139) | |
| 546-668, gnl|tetNig1|chr5 (5223141-5223266) | |
| 758-889, gnl|bosTau2|chr18 (23953476-23953607) | |
| 758-889, gnl|canFam2|chr2 (62602137-62601944) | |
| 758-889, gnl|danRer3|chr19 (32392909-32392727) | |
| 758-889, gnl|echTel1|scaffold_273646 (2933-2754) | |
| 758-889, gnl|fr1|chrUn (298596947-298596774) | |
| 758-889, gnl|galGal2|chr11 (2048558-2048382) | |
| 758-889, gnl|hg17|chr16 (55058546-55058741) | |
| 758-889, gnl|Hg17|chr16 (55058575-55058706) | |
| 758-889, gnl|loxAfr1|scaffold_4408 (16315-16125) | |
| 758-889, gnl|mm7|chr8 (92644548-92644744) | |
| 758-889, gnl|Mm7|chr8 (92644577-92644708) | |
| 758-889, gnl|monDom2|scaffold_35 (23096369-23096559) | |
| 758-889, gnl|oryCun1|scaffold_117534 (1065-867) | |
| 758-889, gnl|panTro1|chr18 (49156463-49156658) | |
| 758-889, gnl|rheMac2|chr20 (54779425-54779620) | |
| 758-889, gnl|rn3|chr19 (11400922-11400728) | |
| 758-889, gnl|tetNig1|chr5 (5222914-5222731) | |
| 890-1003, gnl|bosTau2|chr18 (23953860-23953973) | |
| 890-1003, gnl|canFam2|chr2 (62601707-62601583) | |
| 890-1003, gnl|canFam2|chr2 (62601604-62601708) | |
| 890-1003, gnl|danRer3|chr19 (32392565-32392665) | |
| 890-1003, gnl|dasNov1|scaffold_5232 (47423-47299) | |
| 890-1003, gnl|dasNov1|scaffold_5232 (47312-47423) | |
| 890-1003, gnl|echTel1|scaffold_273646 (2376-2252) | |
| 890-1003, gnl|echTel1|scaffold_273646 (2265-2377) | |
| 890-1003, gnl|fr1|chrUn (298596520-298596395) | |
| 890-1003, gnl|fr1|chrUn (298596401-298596499) | |
| 890-1003, gnl|galGal2|chr11 (2048033-2047908) | |
| 890-1003, gnl|hg17|chr13 (48683569-48683678) | |
| 890-1003, gnl|hg17|chr16 (55059319-55059444) | |
| 890-1003, gnl|Hg17|chr16 (55059318-55059431) | |
| 890-1003, gnl|loxAfr1|scaffold_4408 (15959-15835) | |
| 890-1003, gnl|loxAfr1|scaffold_4408 (15848-15960) | |
| 890-1003, gnl|mm7|chr8 (92645089-92645213) | |
| 890-1003, gnl|mm7|chr8 (92645200-92645088) | |
| 890-1003, gnl|Mm7|chr8 (92645088-92645201) | |
| 890-1003, gnl|monDom2|scaffold_0 (45406283-45406395) | |
| 890-1003, gnl|monDom2|scaffold_35 (23096799-23096923) | |
| 890-1003, gnl|oryCun1|scaffold_117534 (601-477) | |
| 890-1003, gnl|oryCun1|scaffold_117534 (490-602) | |
| 890-1003, gnl|panTro1|chr14_random (14746911-14747020) | |
| 890-1003, gnl|panTro1|chr18 (49157246-49157371) | |
| 890-1003, gnl|rheMac2|chr17 (28026526-28026416) | |
| 890-1003, gnl|rheMac2|chr17 (28026416-28026527) | |
| 890-1003, gnl|rn3|chr19 (11400382-11400260) | |
| 890-1003, gnl|rn3|chr19 (11400271-11400383) | |
| 890-1003, gnl|tetNig1|chr5 (5222436-5222311) | |
| 890-1003, gnl|tetNig1|chr5 (5222317-5222418) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| cbl (0.114797) |