Ss1.1-Liv1-LVR010022A11.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGAGGAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAAGGTGCCAGGCT TGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGTCCAAGGCAGGG TGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGTCCTGGCTGGGA CTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGGCTTCCTGGCTT ATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCCACCTCCAAAGT TTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACTTGGGCCTGGTTCCCCCGACG GAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGGGATATATGACC TGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGATCCGGACAATG GCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAGTTCTGAAGCCA TGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCCACCGTCGCATG CTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTTTCAGTGACAGC GTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACAACCGTTTGGAC ATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTGTCTTCAGCTTT GACAGCAATTGCCAAGAGAAGCCTAGTGAATATATTGCTGCCATCTTGGAGCTCAGTGCC CTTGTGGCAAAACGGCACCAGCAGATCTTCCTGCACAAGGACTTCCTGTACTACCTCACC CCCGAAGGGAGGCGCTTCCGCAAAGCCTGCCGCCTAGTTCACGACTTCACAGATGCCGTC ATCCAGGAGCGGCGCAACACCCTTCCCAAAGAGGGCATTGATGACTTCCTCAAGGCCAAG GCTAAGGCTAAAACTTTGGACTTCATTGATGTGCTCCTGCTGACCAAGGATGAAGATGGG AAGGGATTGTCAGATGAAGATATCCGAGCTGAAGCTGACACCTTCATGTTTGAGGGCCAT GACACCACAGCCAGTGGCCTCTCCTGGGTCCTGTACAACCTGGCAAAGCACCCAGAATAC CAGGAGCGCTGCCGGCAGGAGGTGCATGAGCTCCTGAGGGACCGTGAGCCTAAAGAGATT GAATGGGATGACCTGGCACAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGG TTGCATCCTCCCGTCACTGTCATCTCCCATCGCTGTACCCAGGACATTGTGCTCCCAGAT GGCCGGATCATCCCCAAAGGTGTTATCTGCCTCATCAGTATTTTTGGGACCCACCACAAC CCATTGGTGTGGCAAGATCCTGAGGTCTATGATCCATTCCGCTTCGACCCAGAAAACATC AAGGAGAGGTCACCTCTGGCTTTCATCCCTTTTTCAGCGGGGCCCAGGAACTGCATTGGG CAGACATTCGCTATGACAGAGATGAAAGTGGTCCTGGCTCTCACACTACTGCGCTTCCGT GTTCTGCCGGTGGAGGAAGAGCCGCGCAGGAAGCCAGAGCTGATTCTGCGCGCGGAGGGC GGACTTTGGCTGCGGGTGGAGCCGCTGAGCGCAAGCCCTCAGTGAGGCATTTCCTCCAGG CCTGGGACTCAGTCCAATACCATCCCCATACTTGCGCAGATTCCCAGCAATAAAACTGTG TTGTCACTTTTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGAGGAAAGGAGGGAAGTTGTGTGGGACAAGGTGCTCCTGACAGAAGGTGCCAGGCT TGGAGTCAAGGGGCTGGGGGTTGTGGCCTGAGGTGAGGAAGGACGCAGTCCAAGGCAGGG TGGTTCCAGGGAATGAGCTGGCCTGGGAGGATGCTGCAGCTGAGCGTGTCCTGGCTGGGA CTGGAGACAGTGGCAGCCTCACCATGGCTGCTTCTATTGCTGGTTGGGGCTTCCTGGCTT ATGTCCCGAGTCCTGGTCTGGACCTATGCTGCCTACAACTATTCTCGCCACCTCCAAAGT TTCCCACAGCCTCCAAAACGGAACTGGTTCTTGGGTCACTTGGGCCTGGTTCCCCCGACG GAGCAGGGATTGAGAGACTTAACTCAGCTGGTGACTAACTACCCCAAGGGATATATGACC TGGATGGGCCCCATCACACCCCTCGTCATTTTGTGCCACCCTGACTTGATCCGGACAATG GCCAATGTCTCAGCTGCCATTGCATCCAAGGATGTGGTCTTCTATGAAGTTCTGAAGCCA TGGCTGGGGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCCACCGTCGCATG CTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTACATGAAGATTTTCAGTGACAGC GTGAATGTCATGCATGCCAAGTGGCAGCGTCTGGTCACAGAGGGCCACAACCGTTTGGAC ATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGTGTCTTCAGCTTT GACAGCAATTGCCAAGAGAAGCCTAGTGAATATATTGCTGCCATCTTGGAGCTCAGTGCC CTTGTGGCAAAACGGCACCAGCAGATCTTCCTGCACAAGGACTTCCTGTACTACCTCACC CCCGAAGGGAGGCGCTTCCGCAAAGCCTGCCGCCTAGTTCACGACTTCACAGATGCCGTC ATCCAGGAGCGGCGCAACACCCTTCCCAAAGAGGGCATTGATGACTTCCTCAAGGCCAAG GCTAAGGCTAAAACTTTGGACTTCATTGATGTGCTCCTGCTGACCAAGGATGAAGATGGG AAGGGATTGTCAGATGAAGATATCCGAGCTGAAGCTGACACCTTCATGTTTGAGGGCCAT GACACCACAGCCAGTGGCCTCTCCTGGGTCCTGTACAACCTGGCAAAGCACCCAGAATAC CAGGAGCGCTGCCGGCAGGAGGTGCATGAGCTCCTGAGGGACCGTGAGCCTAAAGAGATT GAATGGGATGACCTGGCACAGTTGCCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGG TTGCATCCTCCCGTCACTGTCATCTCCCATCGCTGTACCCAGGACATTGTGCTCCCAGAT GGCCGGATCATCCCCAAAGGTGTTATCTGCCTCATCAGTATTTTTGGGACCCACCACAAC CCATTGGTGTGGCAAGATCCTGAGGTCTATGATCCATTCCGCTTCGACCCAGAAAACATC AAGGAGAGGTCACCTCTGGCTTTCATCCCTTTTTCAGCGGGGCCCAGGAACTGCATTGGG CAGACATTCGCTATGACAGAGATGAAAGTGGTCCTGGCTCTCACACTACTGCGCTTCCGT GTTCTGCCGGTGGAGGAAGAGCCGCGCAGGAAGCCAGAGCTGATTCTGCGCGCGGAGGGC GGACTTTGGCTGCGGGTGGAGCCGCTGAGCGCAAGCCCTCAGTGAGGCATTTCCTCCAGG CCTGGGACTCAGTCCAATACCATCCCCATACTTGCGCAGATTCCCAGCAATAAAACTGTG TTGTCACTTTTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 148-266, - strand, RNAz p=0.84903 | |
| 1624-1743, + strand, RNAz p=0.522804 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 148-266, - strand, RNAz p=0.84903 | |
| 1624-1743, + strand, RNAz p=0.522804 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 148-350, gnl|bosTau2|chr7 (6615566-6615768) | |
| 148-350, gnl|canFam2|chr20 (49633320-49632960) | |
| 148-350, gnl|dasNov1|scaffold_102785 (4436-4017) | |
| 148-350, gnl|echTel1|scaffold_279373 (37058-37429) | |
| 148-350, gnl|hg17|chr19 (15587287-15587635) | |
| 148-350, gnl|Hg17|chr19 (15906221-15906019) | |
| 148-350, gnl|loxAfr1|scaffold_87764 (1477-1858) | |
| 148-350, gnl|mm7|chr17 (30735318-30735681) | |
| 148-350, gnl|Mm7|chr17 (30862078-30862280) | |
| 148-350, gnl|monDom2|scaffold_42 (9105533-9105116) | |
| 148-350, gnl|oryCun1|scaffold_83220 (861-1230) | |
| 148-350, gnl|panTro1|chr20 (16292319-16292667) | |
| 148-350, gnl|rheMac2|chr19 (15210102-15210450) | |
| 148-350, gnl|rn3|chr7 (13119788-13120149) | |
| 352-504, gnl|bosTau2|chr7 (6595990-6595838) | |
| 352-504, gnl|canFam2|chr20 (49630953-49630651) | |
| 352-504, gnl|dasNov1|scaffold_61785 (8517-8793) | |
| 352-504, gnl|echTel1|scaffold_279373 (39511-39795) | |
| 352-504, gnl|Hg17|chr19 (15615720-15615871) | |
| 352-504, gnl|hg17|chr8 (43518223-43518515) | |
| 352-504, gnl|loxAfr1|scaffold_87764 (4977-5274) | |
| 352-504, gnl|mm7|chr17 (31116457-31116170) | |
| 352-504, gnl|Mm7|chr17 (30893196-30893348) | |
| 352-504, gnl|oryCun1|scaffold_83220 (4196-4454) | |
| 352-504, gnl|panTro1|chr7 (44994214-44994506) | |
| 352-504, gnl|rheMac2|chr19 (15239517-15239818) | |
| 352-504, gnl|rn3|chr7 (13598647-13598371) | |
| 543-676, gnl|bosTau2|chr7 (6620616-6620749) | |
| 543-676, gnl|Hg17|chr19 (15899154-15899021) | |
| 543-676, gnl|Mm7|chr17 (30870545-30870678) | |
| 798-1069, gnl|bosTau2|chr7 (6686113-6686384) | |
| 798-1069, gnl|canFam2|chr20 (49624798-49624524) | |
| 798-1069, gnl|danRer3|chr22 (5354785-5355074) | |
| 798-1069, gnl|dasNov1|scaffold_32614 (9314-9037) | |
| 798-1069, gnl|echTel1|scaffold_217936 (5571-5293) | |
| 798-1069, gnl|hg17|chr19 (15621722-15621999) | |
| 798-1069, gnl|Hg17|chr19 (15861503-15861232) | |
| 798-1069, gnl|loxAfr1|scaffold_26181 (36065-35788) | |
| 798-1069, gnl|mm7|chr17 (30873607-30873884) | |
| 798-1069, gnl|Mm7|chr17 (30900322-30900593) | |
| 798-1069, gnl|monDom2|scaffold_100 (1756703-1756980) | |
| 798-1069, gnl|oryCun1|scaffold_96644 (3733-4010) | |
| 798-1069, gnl|panTro1|chr20 (16329444-16329721) | |
| 798-1069, gnl|rheMac2|chr19 (15245808-15246085) | |
| 798-1069, gnl|rn3|chr7 (13164823-13165106) | |
| 1135-1266, gnl|bosTau2|chr7 (6726167-6726036) | |
| 1135-1266, gnl|canFam2|chr20 (49656059-49655824) | |
| 1135-1266, gnl|dasNov1|scaffold_93572 (3183-3420) | |
| 1135-1266, gnl|echTel1|scaffold_217936 (4921-4719) | |
| 1135-1266, gnl|Hg17|chr19 (15595774-15595905) | |
| 1135-1266, gnl|hg17|chr8 (43514970-43515212) | |
| 1135-1266, gnl|loxAfr1|scaffold_39215 (6914-7149) | |
| 1135-1266, gnl|mm7|chr17 (30723553-30723786) | |
| 1135-1266, gnl|Mm7|chr17 (30723705-30723836) | |
| 1135-1266, gnl|monDom2|scaffold_100 (90422-90704) | |
| 1135-1266, gnl|oryCun1|scaffold_96644 (5006-5247) | |
| 1135-1266, gnl|panTro1|chr7 (44990954-44991197) | |
| 1135-1266, gnl|rheMac2|chr15 (108716116-108715877) | |
| 1135-1266, gnl|rn3|chr7 (13615691-13615459) | |
| 1545-1809, gnl|bosTau2|chr7 (6692253-6692512) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-350, gnl|bosTau2|chr7 (6615566-6615768) | |
| 148-350, gnl|canFam2|chr20 (49633320-49632960) | |
| 148-350, gnl|dasNov1|scaffold_102785 (4436-4017) | |
| 148-350, gnl|echTel1|scaffold_279373 (37058-37429) | |
| 148-350, gnl|hg17|chr19 (15587287-15587635) | |
| 148-350, gnl|Hg17|chr19 (15906221-15906019) | |
| 148-350, gnl|loxAfr1|scaffold_87764 (1477-1858) | |
| 148-350, gnl|mm7|chr17 (30735318-30735681) | |
| 148-350, gnl|Mm7|chr17 (30862078-30862280) | |
| 148-350, gnl|monDom2|scaffold_42 (9105533-9105116) | |
| 148-350, gnl|oryCun1|scaffold_83220 (861-1230) | |
| 148-350, gnl|panTro1|chr20 (16292319-16292667) | |
| 148-350, gnl|rheMac2|chr19 (15210102-15210450) | |
| 148-350, gnl|rn3|chr7 (13119788-13120149) | |
| 352-504, gnl|bosTau2|chr7 (6595990-6595838) | |
| 352-504, gnl|canFam2|chr20 (49630953-49630651) | |
| 352-504, gnl|dasNov1|scaffold_61785 (8517-8793) | |
| 352-504, gnl|echTel1|scaffold_279373 (39511-39795) | |
| 352-504, gnl|Hg17|chr19 (15615720-15615871) | |
| 352-504, gnl|hg17|chr8 (43518223-43518515) | |
| 352-504, gnl|loxAfr1|scaffold_87764 (4977-5274) | |
| 352-504, gnl|mm7|chr17 (31116457-31116170) | |
| 352-504, gnl|Mm7|chr17 (30893196-30893348) | |
| 352-504, gnl|oryCun1|scaffold_83220 (4196-4454) | |
| 352-504, gnl|panTro1|chr7 (44994214-44994506) | |
| 352-504, gnl|rheMac2|chr19 (15239517-15239818) | |
| 352-504, gnl|rn3|chr7 (13598647-13598371) | |
| 543-676, gnl|bosTau2|chr7 (6620616-6620749) | |
| 543-676, gnl|Hg17|chr19 (15899154-15899021) | |
| 543-676, gnl|Mm7|chr17 (30870545-30870678) | |
| 798-1069, gnl|bosTau2|chr7 (6686113-6686384) | |
| 798-1069, gnl|canFam2|chr20 (49624798-49624524) | |
| 798-1069, gnl|danRer3|chr22 (5354785-5355074) | |
| 798-1069, gnl|dasNov1|scaffold_32614 (9314-9037) | |
| 798-1069, gnl|echTel1|scaffold_217936 (5571-5293) | |
| 798-1069, gnl|hg17|chr19 (15621722-15621999) | |
| 798-1069, gnl|Hg17|chr19 (15861503-15861232) | |
| 798-1069, gnl|loxAfr1|scaffold_26181 (36065-35788) | |
| 798-1069, gnl|mm7|chr17 (30873607-30873884) | |
| 798-1069, gnl|Mm7|chr17 (30900322-30900593) | |
| 798-1069, gnl|monDom2|scaffold_100 (1756703-1756980) | |
| 798-1069, gnl|oryCun1|scaffold_96644 (3733-4010) | |
| 798-1069, gnl|panTro1|chr20 (16329444-16329721) | |
| 798-1069, gnl|rheMac2|chr19 (15245808-15246085) | |
| 798-1069, gnl|rn3|chr7 (13164823-13165106) | |
| 1135-1266, gnl|bosTau2|chr7 (6726167-6726036) | |
| 1135-1266, gnl|canFam2|chr20 (49656059-49655824) | |
| 1135-1266, gnl|dasNov1|scaffold_93572 (3183-3420) | |
| 1135-1266, gnl|echTel1|scaffold_217936 (4921-4719) | |
| 1135-1266, gnl|Hg17|chr19 (15595774-15595905) | |
| 1135-1266, gnl|hg17|chr8 (43514970-43515212) | |
| 1135-1266, gnl|loxAfr1|scaffold_39215 (6914-7149) | |
| 1135-1266, gnl|mm7|chr17 (30723553-30723786) | |
| 1135-1266, gnl|Mm7|chr17 (30723705-30723836) | |
| 1135-1266, gnl|monDom2|scaffold_100 (90422-90704) | |
| 1135-1266, gnl|oryCun1|scaffold_96644 (5006-5247) | |
| 1135-1266, gnl|panTro1|chr7 (44990954-44991197) | |
| 1135-1266, gnl|rheMac2|chr15 (108716116-108715877) | |
| 1135-1266, gnl|rn3|chr7 (13615691-13615459) | |
| 1545-1809, gnl|bosTau2|chr7 (6692253-6692512) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cki (0.495704) | |
| cli (0.305623) | |
| nco (0.161734) | |
| cbl (0.114797) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| cli (0.305623) | |
| nco (0.161734) | |
| cbl (0.114797) | |
| jej (0.0989218) |