Non-Coding RNA Search

Ss1.1-Liv1-LVR010022B02.5

Sequence:


               
               CCAATCGGGTGGCGGAGGTCAAGGCCGAAGGGTTCAACTTGCTCTCTAAGGAGTGTTACT
CCCTGACCGGCAAGCAGAGCTCTGCGGAGAGCGACGCCTGGGTGCTACAGTTCGGTGAAG
CTGAGAACCGCCTGCTGATGGGCGGCTGCCGAAACAATTGTCTCTCCGTGCTGAAGACGC
TTCGGGACCGCCACCTGGAGCTGCCAGGCCAGCCGCTCAATAACTACCACATGAAGACGC
TGCTGCTGTACGAGTGCGAGAAGCACCCGAGGGAAACAGACTGGGACGAGGCGTGCCTGG
GCGACCGGCTCAACGGCATCCTGCTGCAGCTCATCTCCTGCCTGCAGTGCCGCCGCTGCC
CTCACTACTTTCTGCCCAACCTCGACCTTTTCCAGGGCAAGCCCCATTCGGCCCTGGAGA
GCGCTGCCAAGCAGACCTGGAGGTTGGCCAGGGAAATTCTTACCAATCCCAAAAGCCTGG
ATAAACTATAGGGTGCCAGGGACTGCTTGAAAAGCGACACAAACGGGAATGCTCTCAGAC
ACACAACACACACAACTGGGCGACCAACAGCGGAAACTCCAGACACAAACTTTTTTGTGA
GCCACCTAAAAGGAAGGAGAACCCAACAGAAGACCCTCCCTAATTAACGAGCGAACAAAA
GGAGAGCAAACCAACCAACCAAACAAACAAAATCACATTCTTGCACAAAAGTGATCGTTT
TCTTCCGAACAATGTGAATTTAAAAGGTCACACAAAAGAAGCAATCGGGCTTTGCCACCA
CAAAATGAAACCCAAGGTACATTTTCAAATCAAAGTATTGTAGTTTCTCCCTTTTACTTC
TCTCTCTCTTTCTTTCTCTCTGTCTGTCTGTCTTCAATTTGTTTTGGGTTGCCTGAATGT
TGTCACCAAGTGAAAAAGTATTTAATTATATGTAAAATTTCTCTTTTAAACAAAACTTTG
CTGATGTTAAATGTATCTCAGTGCCAATGTCAGATGTGCCCCTCCCTCTCTCGCACCTCT
ACCCTCACCTTAAGCAGTCTTGTCGAAAACAGTAATAAAAATATTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAATCGGGTGGCGGAGGTCAAGGCCGAAGGGTTCAACTTGCTCTCTAAGGAGTGTTACT
CCCTGACCGGCAAGCAGAGCTCTGCGGAGAGCGACGCCTGGGTGCTACAGTTCGGTGAAG
CTGAGAACCGCCTGCTGATGGGCGGCTGCCGAAACAATTGTCTCTCCGTGCTGAAGACGC
TTCGGGACCGCCACCTGGAGCTGCCAGGCCAGCCGCTCAATAACTACCACATGAAGACGC
TGCTGCTGTACGAGTGCGAGAAGCACCCGAGGGAAACAGACTGGGACGAGGCGTGCCTGG
GCGACCGGCTCAACGGCATCCTGCTGCAGCTCATCTCCTGCCTGCAGTGCCGCCGCTGCC
CTCACTACTTTCTGCCCAACCTCGACCTTTTCCAGGGCAAGCCCCATTCGGCCCTGGAGA
GCGCTGCCAAGCAGACCTGGAGGTTGGCCAGGGAAATTCTTACCAATCCCAAAAGCCTGG
ATAAACTATAGGGTGCCAGGGACTGCTTGAAAAGCGACACAAACGGGAATGCTCTCAGAC
ACACAACACACACAACTGGGCGACCAACAGCGGAAACTCCAGACACAAACTTTTTTGTGA
GCCACCTAAAAGGAAGGAGAACCCAACAGAAGACCCTCCCTAATTAACGAGCGAACAAAA
GGAGAGCAAACCAACCAACCAAACAAACAAAATCACATTCTTGCACAAAAGTGATCGTTT
TCTTCCGAACAATGTGAATTTAAAAGGTCACACAAAAGAAGCAATCGGGCTTTGCCACCA
CAAAATGAAACCCAAGGTACATTTTCAAATCAAAGTATTGTAGTTTCTCCCTTTTACTTC
TCTCTCTCTTTCTTTCTCTCTGTCTGTCTGTCTTCAATTTGTTTTGGGTTGCCTGAATGT
TGTCACCAAGTGAAAAAGTATTTAATTATATGTAAAATTTCTCTTTTAAACAAAACTTTG
CTGATGTTAAATGTATCTCAGTGCCAATGTCAGATGTGCCCCTCCCTCTCTCGCACCTCT
ACCCTCACCTTAAGCAGTCTTGTCGAAAACAGTAATAAAAATATTACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.715056

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.715056

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-491, gnl|bosTau2|chr12 (13204676-13205166)
               

               
               1-491, gnl|Hg17|chr13 (34947686-34947196)
               

               
               1-491, gnl|Mm7|chr3 (55910638-55911128)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-491, gnl|bosTau2|chr12 (13204676-13205166)
               

               
               1-491, gnl|Hg17|chr13 (34947686-34947196)
               

               
               1-491, gnl|Mm7|chr3 (55910638-55911128)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sin (0.349895)
               

               
               pla (0.267344)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               pla (0.267344)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               eru (0.120048)

	1-491, gnl\|bosTau2\|chr12 (13204676-13205166)
	1-491, gnl\|Hg17\|chr13 (34947686-34947196)
	1-491, gnl\|Mm7\|chr3 (55910638-55911128)

	sin (0.349895)
	pla (0.267344)
	eye (0.170503)
	fhi (0.169578)
	lun (0.150489)
	eru (0.120048)