Ss1.1-Liv1-LVR010022D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGCGTGGCGGAGGCACGTGGTGCGTAGTGCGTGGTGTGTGTGGCTTGACTGGGCTG CGCGCCCCTCCCGCGCGACCAGGAGGTCCTCCCCGTGGAGCCTCAGCTTCCTCTGCTTGC AGTAGAGGAGCACGCCCCTTACGGAGATACCCTAGGCCCCGGCTTCCAGCTCCGTTGCCG ACCTGGGGGGCTCCGGGACTGGGACCGACAGAGCGGGCTCCGGCATCCCCGCCGCCCCGT CAGCGACTGGGACCGACAGAGCGGGCTCCAGCATCCCCGCCGCCCCAGGTGTCTGTGCGT GACTGACACTCGCGTTCCCAGAGTCCCCCGCGCAGGCGGGATGTTTGTCCTGGTGGAGAT GGTTGACACCGTGCGGATACCCCCGTGGCAGTTTGAGAGGAAGCTCAACGACTCTATTGC CGAGGAGCTGAACAAGAAATTGGCCAACAAGGTTGTATACAACGTGGGACTCTGCATCTG TCTGTTTGACATCACCAAGCTGGAGGATGCCTACGTGTTCCCTGGGGACGGCGCGTCACA CACCAAAGTTCACTTTCGCTACGTGGTGTTTCACCCGTTCCTGGACGAGATCCTGATTGG GAAGATCAAGGGCTGCAGCCCGGAGGGCGTGCACGTCTCTCTAGGGTTCTTTGATGACAT TCTCATCCCTCCGGAGTCGCTGCAGCAGCCGGCCAAGTTCGACGAAGCAGAGCAGGTGTG GGTGTGGGAGTACGAGACGGAGGAGGGGGCGCACGACCTGTACATGGACACTGGCGAGGA GCTCCGCTTCCGGGTGGTGGACGAGAGCTTCGTGGACACGTCCCCCACGGGGCCCAGCTC GGCCGAGGCCGCCTCGTCCAGCGAGGAGCTGCCAAGGAAGGAGGCTCCATACACGCTTGT GGGATCCATTTGTGAGCCGGGCCTCGGCCTTCTCTCCTGGTGGACTAGCAGCTAGCCCTG CGCCTGGACAGTGGCCTGCGGCCGGCCCTGGAGACCACAGCGCTTCTGCGGATGCCGAGG AGTGGAGACCGTCCCTCACCAGGTTGTGGCCGCCCCCGACCTCCCAGAGCCGACGTCTCA GCCCGGTGGACCGCTGCCTCTCCGCAACAGCAAAGACATGTAATAAATGATGGACGAGCC ACCCTGTCTCAATGATGTGAGGTCACCGGGTTGCCACAGCTGGCACAGCATGTCCTGCCT CACCCCAAATCACTTCTGGAGATGCTCCAGCCCCCGCAAGCAGGACTTGGGGGTTGAGAG GTCCAGGCGCCCTCAGGCCAGGCTCTGGACTGGCAGAGCTTGGCATAGCTGCCAGGTGCT GAGCCGGGTCTGACCTTGTAGGGCCAACCACCTTCCTTCCCACCAGCATGTGGACTCAGG AAAATGGAGGCGGTGGGCTTGGCTGGCCTAAGGGGGCGAGGGCTGGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGCGTGGCGGAGGCACGTGGTGCGTAGTGCGTGGTGTGTGTGGCTTGACTGGGCTG CGCGCCCCTCCCGCGCGACCAGGAGGTCCTCCCCGTGGAGCCTCAGCTTCCTCTGCTTGC AGTAGAGGAGCACGCCCCTTACGGAGATACCCTAGGCCCCGGCTTCCAGCTCCGTTGCCG ACCTGGGGGGCTCCGGGACTGGGACCGACAGAGCGGGCTCCGGCATCCCCGCCGCCCCGT CAGCGACTGGGACCGACAGAGCGGGCTCCAGCATCCCCGCCGCCCCAGGTGTCTGTGCGT GACTGACACTCGCGTTCCCAGAGTCCCCCGCGCAGGCGGGATGTTTGTCCTGGTGGAGAT GGTTGACACCGTGCGGATACCCCCGTGGCAGTTTGAGAGGAAGCTCAACGACTCTATTGC CGAGGAGCTGAACAAGAAATTGGCCAACAAGGTTGTATACAACGTGGGACTCTGCATCTG TCTGTTTGACATCACCAAGCTGGAGGATGCCTACGTGTTCCCTGGGGACGGCGCGTCACA CACCAAAGTTCACTTTCGCTACGTGGTGTTTCACCCGTTCCTGGACGAGATCCTGATTGG GAAGATCAAGGGCTGCAGCCCGGAGGGCGTGCACGTCTCTCTAGGGTTCTTTGATGACAT TCTCATCCCTCCGGAGTCGCTGCAGCAGCCGGCCAAGTTCGACGAAGCAGAGCAGGTGTG GGTGTGGGAGTACGAGACGGAGGAGGGGGCGCACGACCTGTACATGGACACTGGCGAGGA GCTCCGCTTCCGGGTGGTGGACGAGAGCTTCGTGGACACGTCCCCCACGGGGCCCAGCTC GGCCGAGGCCGCCTCGTCCAGCGAGGAGCTGCCAAGGAAGGAGGCTCCATACACGCTTGT GGGATCCATTTGTGAGCCGGGCCTCGGCCTTCTCTCCTGGTGGACTAGCAGCTAGCCCTG CGCCTGGACAGTGGCCTGCGGCCGGCCCTGGAGACCACAGCGCTTCTGCGGATGCCGAGG AGTGGAGACCGTCCCTCACCAGGTTGTGGCCGCCCCCGACCTCCCAGAGCCGACGTCTCA GCCCGGTGGACCGCTGCCTCTCCGCAACAGCAAAGACATGTAATAAATGATGGACGAGCC ACCCTGTCTCAATGATGTGAGGTCACCGGGTTGCCACAGCTGGCACAGCATGTCCTGCCT CACCCCAAATCACTTCTGGAGATGCTCCAGCCCCCGCAAGCAGGACTTGGGGGTTGAGAG GTCCAGGCGCCCTCAGGCCAGGCTCTGGACTGGCAGAGCTTGGCATAGCTGCCAGGTGCT GAGCCGGGTCTGACCTTGTAGGGCCAACCACCTTCCTTCCCACCAGCATGTGGACTCAGG AAAATGGAGGCGGTGGGCTTGGCTGGCCTAAGGGGGCGAGGGCTGGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 248-453, gnl|bosTau2|chr5 (69992149-69991942) | |
| 248-453, gnl|Hg17|chr22 (40264699-40264493) | |
| 248-453, gnl|Mm7|chr15 (82010390-82010179) | |
| 700-902, gnl|bosTau2|chr5 (69982442-69982240) | |
| 700-902, gnl|canFam2|chr10 (26803840-26803577) | |
| 700-902, gnl|danRer3|chr3 (903809-903539) | |
| 700-902, gnl|echTel1|scaffold_306232 (3342-3092) | |
| 700-902, gnl|fr1|chrUn (98348179-98347919) | |
| 700-902, gnl|galGal2|chr1 (46322869-46322628) | |
| 700-902, gnl|hg17|chr22 (40251172-40251423) | |
| 700-902, gnl|Hg17|chr22 (40251392-40251190) | |
| 700-902, gnl|loxAfr1|scaffold_16474 (39989-40240) | |
| 700-902, gnl|mm7|chr15 (82001590-82001824) | |
| 700-902, gnl|Mm7|chr15 (82001796-82001594) | |
| 700-902, gnl|monDom2|scaffold_269 (114012-114260) | |
| 700-902, gnl|panTro1|chr23 (40518344-40518595) | |
| 700-902, gnl|rheMac2|chr10 (85490411-85490662) | |
| 700-902, gnl|rn3|chr7 (120302928-120303162) | |
| 700-902, gnl|tetNig1|chrUn_random (109528661-109528921) | |
| 700-902, gnl|xenTro1|scaffold_325 (54436-54182) | |
| 981-1304, gnl|bosTau2|chr5 (69981249-69980918) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 248-453, gnl|bosTau2|chr5 (69992149-69991942) | |
| 248-453, gnl|Hg17|chr22 (40264699-40264493) | |
| 248-453, gnl|Mm7|chr15 (82010390-82010179) | |
| 700-902, gnl|bosTau2|chr5 (69982442-69982240) | |
| 700-902, gnl|canFam2|chr10 (26803840-26803577) | |
| 700-902, gnl|danRer3|chr3 (903809-903539) | |
| 700-902, gnl|echTel1|scaffold_306232 (3342-3092) | |
| 700-902, gnl|fr1|chrUn (98348179-98347919) | |
| 700-902, gnl|galGal2|chr1 (46322869-46322628) | |
| 700-902, gnl|hg17|chr22 (40251172-40251423) | |
| 700-902, gnl|Hg17|chr22 (40251392-40251190) | |
| 700-902, gnl|loxAfr1|scaffold_16474 (39989-40240) | |
| 700-902, gnl|mm7|chr15 (82001590-82001824) | |
| 700-902, gnl|Mm7|chr15 (82001796-82001594) | |
| 700-902, gnl|monDom2|scaffold_269 (114012-114260) | |
| 700-902, gnl|panTro1|chr23 (40518344-40518595) | |
| 700-902, gnl|rheMac2|chr10 (85490411-85490662) | |
| 700-902, gnl|rn3|chr7 (120302928-120303162) | |
| 700-902, gnl|tetNig1|chrUn_random (109528661-109528921) | |
| 700-902, gnl|xenTro1|scaffold_325 (54436-54182) | |
| 981-1304, gnl|bosTau2|chr5 (69981249-69980918) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nje (0.16592) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nje (0.16592) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) |