Ss1.1-Liv1-LVR010022F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAAAAAAAAAACTCTGCGCCTGGAGCCGCGGCCTGGACGCTGCGCGCAGGAGAA AGGGAACGATCAACGCTCGGCTTGCTGGGCCGCGCTTGCTTCTCAGTTGTCCGGCTGCAG CATGGGGCCTCTCCCGCGGACCGTGGAGCTTTTCTACGATGTGCTGTCCCCCTACTCCTG GCTGGCCTTCGAGATCCTGTGCCGGTACAAGAACATCTGGAATGTCAACCTGCAGCTGTG CCCAAGCTTAATTGCAGGGATCTTAAAAGACAGCGGAAACCAGCCACCAGCTATGCTTCC CCGCAAAGCTGTGTACATGAAAGAGGACATTAAGCGACTGGGACACCATCTCCAGGTTCC CATCCACTTCCCCAAGGATTTCTTCTCTACAATCCTTGGAAAAGGAAGTTTGACAGCCAT GCGCTTCCTCACCACCGTGAAACTGGAGCACCCCGAGATGCTGGAGAAAGTGTCCAGGGA ACTGTGGATGCGCGTCTGGTCACGGGACGAAGACATCACAGAGCCCCAGAGCGTCCTGGC CGCGGCAGAGAAGGCCGGCATGTCCACAGGACAGGCCCGAGGACTCCTGGAAAGGGTCTC AACACCAGAGGTGAAGAACCAGCTCAAGGAGACCACTGAGGCGGCCTGCAAATATGGGGC CTTTGGGCTGCCCATCACTGTGGCTCACCTGGATGACAAAACACACATGCTCTTTGGCTC TGACCGGATGGAGCTGCTGGCACACCTGCTGGGCGAGAAGTGGATGGGCCCTGTGCCTCC AGCTGTAAATGCCAGACTTTAAGGAAGCAAAGCTGTTGGTATAAACAGAAGACCATCTGC TTACCCCTCCAGCGCGGGGCCTGGGACTCTGCTTTCCTATCTGACAGAGTTTCCTCTGTG GCCCTGGGGGATGCCGGGGAGGGGGCTGTGTGGTACACCATCCACCGTTAGTCTCATAGC TGCTGTTACTTCAGTGCCTTATGAGAACCCCAGGCTCTGGTTCCCAAAGAATAAACCTCA TGCCATTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATTTTCC TTGGGGGGGCCAAATTTTACCCTTCCCCATTTTTTTTGAAAAAGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAAAAAAAAAACTCTGCGCCTGGAGCCGCGGCCTGGACGCTGCGCGCAGGAGAA AGGGAACGATCAACGCTCGGCTTGCTGGGCCGCGCTTGCTTCTCAGTTGTCCGGCTGCAG CATGGGGCCTCTCCCGCGGACCGTGGAGCTTTTCTACGATGTGCTGTCCCCCTACTCCTG GCTGGCCTTCGAGATCCTGTGCCGGTACAAGAACATCTGGAATGTCAACCTGCAGCTGTG CCCAAGCTTAATTGCAGGGATCTTAAAAGACAGCGGAAACCAGCCACCAGCTATGCTTCC CCGCAAAGCTGTGTACATGAAAGAGGACATTAAGCGACTGGGACACCATCTCCAGGTTCC CATCCACTTCCCCAAGGATTTCTTCTCTACAATCCTTGGAAAAGGAAGTTTGACAGCCAT GCGCTTCCTCACCACCGTGAAACTGGAGCACCCCGAGATGCTGGAGAAAGTGTCCAGGGA ACTGTGGATGCGCGTCTGGTCACGGGACGAAGACATCACAGAGCCCCAGAGCGTCCTGGC CGCGGCAGAGAAGGCCGGCATGTCCACAGGACAGGCCCGAGGACTCCTGGAAAGGGTCTC AACACCAGAGGTGAAGAACCAGCTCAAGGAGACCACTGAGGCGGCCTGCAAATATGGGGC CTTTGGGCTGCCCATCACTGTGGCTCACCTGGATGACAAAACACACATGCTCTTTGGCTC TGACCGGATGGAGCTGCTGGCACACCTGCTGGGCGAGAAGTGGATGGGCCCTGTGCCTCC AGCTGTAAATGCCAGACTTTAAGGAAGCAAAGCTGTTGGTATAAACAGAAGACCATCTGC TTACCCCTCCAGCGCGGGGCCTGGGACTCTGCTTTCCTATCTGACAGAGTTTCCTCTGTG GCCCTGGGGGATGCCGGGGAGGGGGCTGTGTGGTACACCATCCACCGTTAGTCTCATAGC TGCTGTTACTTCAGTGCCTTATGAGAACCCCAGGCTCTGGTTCCCAAAGAATAAACCTCA TGCCATTCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATTTTCC TTGGGGGGGCCAAATTTTACCCTTCCCCATTTTTTTTGAAAAAGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 30-193, gnl|bosTau2|chr4 (58337397-58337560) | |
| 30-193, gnl|Hg17|chr7 (142477374-142477515) | |
| 30-193, gnl|Mm7|chr6 (42188918-42189075) | |
| 542-659, gnl|bosTau2|chr4 (58341332-58341449) | |
| 542-659, gnl|canFam2|chr16 (9392723-9392597) | |
| 542-659, gnl|dasNov1|scaffold_11472 (48298-48172) | |
| 542-659, gnl|hg17|chr7 (142481546-142481672) | |
| 542-659, gnl|Hg17|chr7 (142481547-142481664) | |
| 542-659, gnl|loxAfr1|scaffold_111101 (4762-4888) | |
| 542-659, gnl|mm7|chr6 (42192360-42192486) | |
| 542-659, gnl|Mm7|chr6 (42192361-42192478) | |
| 542-659, gnl|monDom2|scaffold_7 (1860961-1861087) | |
| 542-659, gnl|oryCun1|scaffold_69425 (16147-16273) | |
| 542-659, gnl|panTro1|chr6 (145278597-145278723) | |
| 542-659, gnl|rn3|chr4 (70279161-70279287) | |
| 542-659, gnl|tetNig1|chr8 (8814992-8814866) | |
| 752-1030, gnl|bosTau2|chr4 (58342134-58342426) | |
| 752-1030, gnl|canFam2|chr16 (9392100-9391709) | |
| 752-1030, gnl|dasNov1|scaffold_11472 (47656-47233) | |
| 752-1030, gnl|hg17|chr7 (142482450-142482901) | |
| 752-1030, gnl|Hg17|chr7 (142482717-142483038) | |
| 752-1030, gnl|loxAfr1|scaffold_224201 (983-598) | |
| 752-1030, gnl|mm7|chr6 (42192958-42193318) | |
| 752-1030, gnl|monDom2|scaffold_7 (1861623-1862114) | |
| 752-1030, gnl|oryCun1|scaffold_69425 (16773-17218) | |
| 752-1030, gnl|panTro1|chr6 (145279504-145279955) | |
| 752-1030, gnl|rn3|chr4 (70279750-70280104) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-193, gnl|bosTau2|chr4 (58337397-58337560) | |
| 30-193, gnl|Hg17|chr7 (142477374-142477515) | |
| 30-193, gnl|Mm7|chr6 (42188918-42189075) | |
| 542-659, gnl|bosTau2|chr4 (58341332-58341449) | |
| 542-659, gnl|canFam2|chr16 (9392723-9392597) | |
| 542-659, gnl|dasNov1|scaffold_11472 (48298-48172) | |
| 542-659, gnl|hg17|chr7 (142481546-142481672) | |
| 542-659, gnl|Hg17|chr7 (142481547-142481664) | |
| 542-659, gnl|loxAfr1|scaffold_111101 (4762-4888) | |
| 542-659, gnl|mm7|chr6 (42192360-42192486) | |
| 542-659, gnl|Mm7|chr6 (42192361-42192478) | |
| 542-659, gnl|monDom2|scaffold_7 (1860961-1861087) | |
| 542-659, gnl|oryCun1|scaffold_69425 (16147-16273) | |
| 542-659, gnl|panTro1|chr6 (145278597-145278723) | |
| 542-659, gnl|rn3|chr4 (70279161-70279287) | |
| 542-659, gnl|tetNig1|chr8 (8814992-8814866) | |
| 752-1030, gnl|bosTau2|chr4 (58342134-58342426) | |
| 752-1030, gnl|canFam2|chr16 (9392100-9391709) | |
| 752-1030, gnl|dasNov1|scaffold_11472 (47656-47233) | |
| 752-1030, gnl|hg17|chr7 (142482450-142482901) | |
| 752-1030, gnl|Hg17|chr7 (142482717-142483038) | |
| 752-1030, gnl|loxAfr1|scaffold_224201 (983-598) | |
| 752-1030, gnl|mm7|chr6 (42192958-42193318) | |
| 752-1030, gnl|monDom2|scaffold_7 (1861623-1862114) | |
| 752-1030, gnl|oryCun1|scaffold_69425 (16773-17218) | |
| 752-1030, gnl|panTro1|chr6 (145279504-145279955) | |
| 752-1030, gnl|rn3|chr4 (70279750-70280104) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cli (0.91687) | |
| duo (0.345602) | |
| jej (0.296765) | |
| pla (0.267344) | |
| cov (0.264306) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.91687) | |
| duo (0.345602) | |
| jej (0.296765) | |
| pla (0.267344) | |
| cov (0.264306) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |