Ss1.1-Liv1-LVR010026B04.5
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ATTGGACGGGCCGCTGAGGTGTGCGCCCGCAGATGTCTGCGCGTCTCCGGGGGCAGAGCG
TGCCATCCAGATCCTCCCAGTCCGCGCTCTTCGCTGTCCAGGCCACAGCGATCGCCATGA
CCCACCTACCGCCCGACGTTGCAGAGGACGACTGTCTGCCGGAGTATCGCCACCTGTTTT
GCCCGGACTTGCTTCAGGACAAGGTGGCTTTCATCACGGGCGGTGGCTCTGGAATCGGGT
TCCGGATTGCTGAGCTCTTCATGCGGCACGGCTGCCACACGGTCATCGCCAGCAGAAGTC
TCCCGAGAGTGTCGACGGCTGCTAGAAAGCTGGCTGCTGCCACTGGCCAGACGTGCCTTC
CGTTATCGCTGGATGTCCGAGTGCCCGCGACAATCGTGGCAGCCGTGGAGCAGGCCCTGC
AGGGGTTGGGAAAGGTCGACATCCTCGTAAACTGTGCAGCTGGGAACTTCCTGTGCCCCG
CCAGCGCCTTGTCCCCCAACGCCTTCAAGGCCGTGCTGGACACCGACACCTTGGGCACCT
TCAACATGTGCCGCGTGCTCTACGAGAAGTTCTTCCGGGTGAGTGGCCTATGGCTAGGCA
CCCCTGCTTCTGGCCACCCCCTCACTGCTCTCCTCGTGTGTTGCAGGACCACGGTGGGGT
GATTGTGAACATCACCGCGACCCTTGGTACCCGGGGGCAGGTGCTCCAAGTGCATGCAGG
CTCTGCCAAGGCGGCCGTGGATGCCATGACGCGGCACCTGGCTGTGGAGTGGGCCCCCCA
GAACATCCGTGTCAACAGCCTCGCCCTGGGCCCCATCAGTGGCACAGAGGGTTTCCGGCG
GCTGGGCGGCCTGAATGCTGGCTTGCATACAGAGACCTTGGCCGGCCCCCAGCAGAGGCT
GGGCAACAAGACAGAGGTGGCCCACAGCGCCCTCTTCCTGGCCAGCCCCTTGGCGTCCTA
TGTGACGGGAGCCGTGCTGGTGGTTGATGGCGGGACCTGGATGACATTCCCTAACGACGT
CAAGATGCTGGCGGCCTTCGGATCCGTCTCTGCGAAGCTCTAGCTGGTTTACAAAGAATG
GCTCTATTTCCAAATTTTGGAGTATCTGGGGGACACCCATCACATCCAGACCTGAGAGCA
TCTTGACCCCACACGATACCCGCCTGGCATCTGCTGGAGGAGGAAGAAGGAATGTTGGCC
GGGAAGAAGTGGAATTAACCGCCAGCTCCTCCGCCCCCGGACGTAATCTGGACACTTTTA
CCCAGTGGGAGGTGATGTGAGAGCTTCACCTCGGGAACCTGTGACCTGCGAGGTTCCTTT
CGGAAAGGAAGTTCCGAATCCGCTCAGGAACCCCGCCCCCCCCCGCCTGGTCCTCAGCAC
CCGGCCTGGGTGCGAGCCGTGGATGTGGCTGCTGGGGAGGCATGGTGGGGGCGGCCCGTG
GGCTCCATGGCGACTGGAACTGGAGATGCCTTTGCTACCAGGAGGGAGCAGGTGCAGCCA
CTGCAGAAGGAAGTGTTAAAATAAGAAAATCATGCGAACCCGGCTGAGTCAGGAGGTATT
AAATTGTGCCTTACAAATGCACGGAAAAAAAAAAAACCAAGAAATGTACTTTCTCAAATT
TGAAGGTGATAAAAAGGCCCTTCCCCCGACGAAGTATCGGTAAACATGAGTGTGGCCTGT
GGATGGCTACAGGCGGCCCCGGGGAGGGTGCCTGGGGTCCAGACCTAAACGTGACCCTGC
TCTGGGTGTGCTGACCCCACCCAAAATGCTTATCTAACGCTAGATAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ATTGGACGGGCCGCTGAGGTGTGCGCCCGCAGATGTCTGCGCGTCTCCGGGGGCAGAGCG
TGCCATCCAGATCCTCCCAGTCCGCGCTCTTCGCTGTCCAGGCCACAGCGATCGCCATGA
CCCACCTACCGCCCGACGTTGCAGAGGACGACTGTCTGCCGGAGTATCGCCACCTGTTTT
GCCCGGACTTGCTTCAGGACAAGGTGGCTTTCATCACGGGCGGTGGCTCTGGAATCGGGT
TCCGGATTGCTGAGCTCTTCATGCGGCACGGCTGCCACACGGTCATCGCCAGCAGAAGTC
TCCCGAGAGTGTCGACGGCTGCTAGAAAGCTGGCTGCTGCCACTGGCCAGACGTGCCTTC
CGTTATCGCTGGATGTCCGAGTGCCCGCGACAATCGTGGCAGCCGTGGAGCAGGCCCTGC
AGGGGTTGGGAAAGGTCGACATCCTCGTAAACTGTGCAGCTGGGAACTTCCTGTGCCCCG
CCAGCGCCTTGTCCCCCAACGCCTTCAAGGCCGTGCTGGACACCGACACCTTGGGCACCT
TCAACATGTGCCGCGTGCTCTACGAGAAGTTCTTCCGGGTGAGTGGCCTATGGCTAGGCA
CCCCTGCTTCTGGCCACCCCCTCACTGCTCTCCTCGTGTGTTGCAGGACCACGGTGGGGT
GATTGTGAACATCACCGCGACCCTTGGTACCCGGGGGCAGGTGCTCCAAGTGCATGCAGG
CTCTGCCAAGGCGGCCGTGGATGCCATGACGCGGCACCTGGCTGTGGAGTGGGCCCCCCA
GAACATCCGTGTCAACAGCCTCGCCCTGGGCCCCATCAGTGGCACAGAGGGTTTCCGGCG
GCTGGGCGGCCTGAATGCTGGCTTGCATACAGAGACCTTGGCCGGCCCCCAGCAGAGGCT
GGGCAACAAGACAGAGGTGGCCCACAGCGCCCTCTTCCTGGCCAGCCCCTTGGCGTCCTA
TGTGACGGGAGCCGTGCTGGTGGTTGATGGCGGGACCTGGATGACATTCCCTAACGACGT
CAAGATGCTGGCGGCCTTCGGATCCGTCTCTGCGAAGCTCTAGCTGGTTTACAAAGAATG
GCTCTATTTCCAAATTTTGGAGTATCTGGGGGACACCCATCACATCCAGACCTGAGAGCA
TCTTGACCCCACACGATACCCGCCTGGCATCTGCTGGAGGAGGAAGAAGGAATGTTGGCC
GGGAAGAAGTGGAATTAACCGCCAGCTCCTCCGCCCCCGGACGTAATCTGGACACTTTTA
CCCAGTGGGAGGTGATGTGAGAGCTTCACCTCGGGAACCTGTGACCTGCGAGGTTCCTTT
CGGAAAGGAAGTTCCGAATCCGCTCAGGAACCCCGCCCCCCCCCGCCTGGTCCTCAGCAC
CCGGCCTGGGTGCGAGCCGTGGATGTGGCTGCTGGGGAGGCATGGTGGGGGCGGCCCGTG
GGCTCCATGGCGACTGGAACTGGAGATGCCTTTGCTACCAGGAGGGAGCAGGTGCAGCCA
CTGCAGAAGGAAGTGTTAAAATAAGAAAATCATGCGAACCCGGCTGAGTCAGGAGGTATT
AAATTGTGCCTTACAAATGCACGGAAAAAAAAAAAACCAAGAAATGTACTTTCTCAAATT
TGAAGGTGATAAAAAGGCCCTTCCCCCGACGAAGTATCGGTAAACATGAGTGTGGCCTGT
GGATGGCTACAGGCGGCCCCGGGGAGGGTGCCTGGGGTCCAGACCTAAACGTGACCCTGC
TCTGGGTGTGCTGACCCCACCCAAAATGCTTATCTAACGCTAGATAAA
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gi|55728009|emb|CAH90757.1| |
Protein identifier
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gi|55728009|emb|CAH90757.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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454-740, gnl|bosTau2|chr25 (1459731-1459445) |
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454-740, gnl|Hg17|chr16 (400244-400785) |
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454-740, gnl|Mm7|chr17 (24267375-24267085) |
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845-1066, gnl|bosTau2|chr25 (1458743-1458525) |
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845-1066, gnl|canFam2|chr6 (43152696-43152471) |
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845-1066, gnl|danRer3|chr24 (31954889-31954658) |
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845-1066, gnl|echTel1|scaffold_300737 (41299-41074) |
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845-1066, gnl|fr1|chrUn (240957156-240957352) |
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845-1066, gnl|galGal2|chr14 (2063092-2062864) |
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845-1066, gnl|hg17|chr16 (401358-401586) |
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845-1066, gnl|Hg17|chr16 (401361-401582) |
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845-1066, gnl|mm7|chr17 (24266339-24266111) |
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845-1066, gnl|Mm7|chr17 (24266334-24266113) |
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845-1066, gnl|monDom2|scaffold_49 (8913354-8913579) |
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845-1066, gnl|panTro1|chr18 (432719-432947) |
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845-1066, gnl|rheMac2|chr20 (396055-396283) |
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845-1066, gnl|rn3|chr10 (15353488-15353260) |
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845-1066, gnl|tetNig1|chr2 (4850614-4850810) |
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1495-1773, gnl|bosTau2|chr25 (1452760-1452482) |
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1495-1773, gnl|Hg17|chr16 (406872-407174) |
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1495-1773, gnl|Mm7|chr17 (24258684-24258382) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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454-740, gnl|bosTau2|chr25 (1459731-1459445) |
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454-740, gnl|Hg17|chr16 (400244-400785) |
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454-740, gnl|Mm7|chr17 (24267375-24267085) |
| |
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845-1066, gnl|bosTau2|chr25 (1458743-1458525) |
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845-1066, gnl|canFam2|chr6 (43152696-43152471) |
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845-1066, gnl|danRer3|chr24 (31954889-31954658) |
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845-1066, gnl|echTel1|scaffold_300737 (41299-41074) |
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845-1066, gnl|fr1|chrUn (240957156-240957352) |
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845-1066, gnl|galGal2|chr14 (2063092-2062864) |
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845-1066, gnl|hg17|chr16 (401358-401586) |
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845-1066, gnl|Hg17|chr16 (401361-401582) |
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845-1066, gnl|mm7|chr17 (24266339-24266111) |
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845-1066, gnl|Mm7|chr17 (24266334-24266113) |
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845-1066, gnl|monDom2|scaffold_49 (8913354-8913579) |
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845-1066, gnl|panTro1|chr18 (432719-432947) |
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845-1066, gnl|rheMac2|chr20 (396055-396283) |
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845-1066, gnl|rn3|chr10 (15353488-15353260) |
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845-1066, gnl|tetNig1|chr2 (4850614-4850810) |
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1495-1773, gnl|bosTau2|chr25 (1452760-1452482) |
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1495-1773, gnl|Hg17|chr16 (406872-407174) |
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1495-1773, gnl|Mm7|chr17 (24258684-24258382) |
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cki (0.495704) |
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duo (0.172801) |
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cje (0.165235) |
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hyp (0.142837) |
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nmm (0.132802) |
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kid (0.129735) |
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eje (0.0988338) |
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cki (0.495704) |
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duo (0.172801) |
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cje (0.165235) |
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hyp (0.142837) |
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nmm (0.132802) |
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kid (0.129735) |
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eje (0.0988338) |
