Non-Coding RNA Search

Ss1.1-Liv1-LVR010026H10.5.5

Sequence:


               
               TTTGAGTGGGACTTGCCTGCTCCCCTTACACACTGTCCTCTCATGTTCTCCAGCATGTTG
CATCTGTGTTTCTCCAGAGGCTTCTGGATGGCGGCTCTGACCGTGATGCTGGTGGTGCTG
AGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGTGAAAGAC
GAGTGTCATTTCTTCAACGGGACCGAGCGGGTGAGGTTATTGCAGAAGCAGTACTATAAC
GGAGAGGAGCACGTGCGCTTCGACAGCGACGTGGGCGAGTACCGGGCGGTGACCGAGCTG
GGGCGGCCAGACGCCAAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGATGCGGGCG
GCGGTGGACACGTACTGCAGACACAACTACAGGATCTTGGATACATTCCTGGTGCCGCGG
CGAGCTGAGCCCACGGTGACGGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAAC
CTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCACGTGGAGGTCAGGTGGTTCCGG
AATGGCCAGGAAGAGGCGGCCGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAGACTGG
ACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAGTGGAGAGGTCTACAGCTGC
CGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGTCTGAA
TCTGCTCAGGGCAAGATGATGAGTGGGGTCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTT
GCTGTGGGGCTGTTCATCTACTTCAAGAATCAGAAAGGACGCCCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGTGGGACTTGCCTGCTCCCCTTACACACTGTCCTCTCATGTTCTCCAGCATGTTG
CATCTGTGTTTCTCCAGAGGCTTCTGGATGGCGGCTCTGACCGTGATGCTGGTGGTGCTG
AGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGTGAAAGAC
GAGTGTCATTTCTTCAACGGGACCGAGCGGGTGAGGTTATTGCAGAAGCAGTACTATAAC
GGAGAGGAGCACGTGCGCTTCGACAGCGACGTGGGCGAGTACCGGGCGGTGACCGAGCTG
GGGCGGCCAGACGCCAAGTACTGGAACAGCCAGAAGGACCTCCTGGAGCAGATGCGGGCG
GCGGTGGACACGTACTGCAGACACAACTACAGGATCTTGGATACATTCCTGGTGCCGCGG
CGAGCTGAGCCCACGGTGACGGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAAC
CTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCACGTGGAGGTCAGGTGGTTCCGG
AATGGCCAGGAAGAGGCGGCCGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAGACTGG
ACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAGTGGAGAGGTCTACAGCTGC
CGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGTCTGAA
TCTGCTCAGGGCAAGATGATGAGTGGGGTCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTT
GCTGTGGGGCTGTTCATCTACTTCAAGAATCAGAAAGGACGCCCTGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8HX73_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8HX73_PIG

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-154, gnl|bosTau2|chr23 (21236056-21236209)
               

               
               1-154, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-154, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-154, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-154, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-154, gnl|Hg17|chr6 (32665551-32665398)
               

               
               1-154, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-154, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-154, gnl|Mm7|chr17 (32383234-32383372)
               

               
               1-154, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-154, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-154, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-154, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-154, gnl|rn3|chr20 (4681120-4681258)
               


               
               175-390, gnl|bosTau2|chr23 (5464274-5464058)
               

               
               175-390, gnl|Hg17|chr6 (32891049-32890833)
               

               
               175-390, gnl|Mm7|chr17 (32410513-32410726)
               


               
               427-723, gnl|bosTau2|chr23 (21244789-21245086)
               

               
               427-723, gnl|Hg17|chr6 (32657591-32657293)
               

               
               427-723, gnl|Mm7|chr17 (32391497-32391797)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr23 (21236056-21236209)
               

               
               1-154, gnl|canFam2|chr12 (5254003-5254141)
               

               
               1-154, gnl|dasNov1|scaffold_23750 (14255-14386)
               

               
               1-154, gnl|echTel1|scaffold_103957 (609-463)
               

               
               1-154, gnl|hg17|chr6 (32665390-32665536)
               

               
               1-154, gnl|Hg17|chr6 (32665551-32665398)
               

               
               1-154, gnl|loxAfr1|scaffold_36898 (7532-7395)
               

               
               1-154, gnl|mm7|chr17 (32383382-32383244)
               

               
               1-154, gnl|Mm7|chr17 (32383234-32383372)
               

               
               1-154, gnl|monDom2|scaffold_42 (16267144-16266995)
               

               
               1-154, gnl|oryCun1|scaffold_173411 (15197-15065)
               

               
               1-154, gnl|panTro1|chr5 (33118451-33118597)
               

               
               1-154, gnl|rheMac2|chr4 (32322304-32322450)
               

               
               1-154, gnl|rn3|chr20 (4681120-4681258)
               


               
               175-390, gnl|bosTau2|chr23 (5464274-5464058)
               

               
               175-390, gnl|Hg17|chr6 (32891049-32890833)
               

               
               175-390, gnl|Mm7|chr17 (32410513-32410726)
               


               
               427-723, gnl|bosTau2|chr23 (21244789-21245086)
               

               
               427-723, gnl|Hg17|chr6 (32657591-32657293)
               

               
               427-723, gnl|Mm7|chr17 (32391497-32391797)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lnt (0.853849)
               

               
               nco (0.323468)
               

               
               hlv (0.278513)
               

               
               col (0.195008)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.853849)
               

               
               nco (0.323468)
               

               
               hlv (0.278513)
               

               
               col (0.195008)
               

               
               hyp (0.142837)
               

               
               med (0.116252)

	1-154, gnl\|bosTau2\|chr23 (21236056-21236209)
	1-154, gnl\|canFam2\|chr12 (5254003-5254141)
	1-154, gnl\|dasNov1\|scaffold_23750 (14255-14386)
	1-154, gnl\|echTel1\|scaffold_103957 (609-463)
	1-154, gnl\|hg17\|chr6 (32665390-32665536)
	1-154, gnl\|Hg17\|chr6 (32665551-32665398)
	1-154, gnl\|loxAfr1\|scaffold_36898 (7532-7395)
	1-154, gnl\|mm7\|chr17 (32383382-32383244)
	1-154, gnl\|Mm7\|chr17 (32383234-32383372)
	1-154, gnl\|monDom2\|scaffold_42 (16267144-16266995)
	1-154, gnl\|oryCun1\|scaffold_173411 (15197-15065)
	1-154, gnl\|panTro1\|chr5 (33118451-33118597)
	1-154, gnl\|rheMac2\|chr4 (32322304-32322450)
	1-154, gnl\|rn3\|chr20 (4681120-4681258)

	175-390, gnl\|bosTau2\|chr23 (5464274-5464058)
	175-390, gnl\|Hg17\|chr6 (32891049-32890833)
	175-390, gnl\|Mm7\|chr17 (32410513-32410726)

	427-723, gnl\|bosTau2\|chr23 (21244789-21245086)
	427-723, gnl\|Hg17\|chr6 (32657591-32657293)
	427-723, gnl\|Mm7\|chr17 (32391497-32391797)

	lnt (0.853849)
	nco (0.323468)
	hlv (0.278513)
	col (0.195008)
	hyp (0.142837)
	med (0.116252)