Ss1.1-Liv1-LVR010028B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGATGGGAAAAGTGATGGCACAGAAACATCCACCAATCTCCACCAAAAGCTCTACTAC CATGTCTTGGGAACCGATCAGTCAGAAGATATTTTGTGTGCTGAGTTTCCTGATGAGCCT AAGTGGATGGGTGGAGCTGAGTTATCCGACGATGGTCGCTACGTCTTGTTGTCAATAAGG GAGGGCTGCGACCCAGTGAACCGACTCTGGTACTGTGACCTGCAGCAGGAGTCCAATGGC ATCACCGGAATCCTGAAGTGGGTAAAACTGATCGACAACTTCGAAGGAGAATATGACTAC GTGACCAACGAGGGCACGGTCTTCACGTTCAAGACAAACCGCCATTCTCCCAACTACCGC CTGATCAACATTGACTTCACGGATCCCGAGGAGTCCAAGTGGAAGGTGCTCGTGCCTGAG CACGAGAAGGACGTCTTAGAATGGGTGGCTTGCGTCAGGTCCAACTTTTTGGTGCTGTGC TACCTCCATGATGTGAAGAATACCTTGCAGCTTCACGACCTGGCCACTGGTGCTCTCCTC AAGATCTTCCCGCTCGAGGTCGGCAGTGTCGTGGGCTACAGCGGTCAGAAGAAGGACACG GAAATCTTCTATCAGTTTACTTCCTTTTTATCTCCAGGTATCATTTATCACTGTGATCTG ACCAAAGAAGAACTGGAGCCAAGAGTGTTCCGCGAGGTGACGGTGAAAGGAATTGATGCT TCCGATTACCAGACGGTCCAGATTTTCTACCCTAGCAAGGATGGTACAAAGATCCCCATG TTCATCGTCCATAAAAAGGGCATAAAATTGGATGGCTCTCATCCTGCCTTCCTCTACGGC TACGGCGGCTTCAACATATCCATCACTCCCAACTACAGTGTGTCCAGGCTCATCTTTGTG AGGCACATGGGTGGTGTCCTTGCAGTGGCCAACATCCGAGGAGGCGGCGAATACGGAGAG ACGTGGCACAAAGGTGGTATCTTGGCCAATAAACAGAACTGCTTTGATGACTTTCAGTGT GCTGCTGAATATCTTATCAAGGAAGGTTACACATCTCCCAAGAGGCTAACTATTAACGGA GGTTCAAATGGAGGCCTCTTAGTAGCTACTTGTGCAAATCAACGACCTGACCTCTTTGGT TGTGTTATTGCTCAAGTTGGAGTAATGGACATGCTGAAGTTCCATAAATATACCATTGGT CATGCCTGGACCACCGATTATGGGTGCTCGGACAGCAAACAACACTTTGAATGGCTCATC AAATATTCTCCGTTGCACAACGTTAAGCTGCCAGAGGCAGACGACATCCAGTACCCATCC ATGCTTCTCCTCACCGCCGACCACGATGACCGAGTGGTCCCGCTTCACTCCCTCAAGTTC ATTGCCACCCTTCAGTACATCGTGGGCCGCAGCCGGAAGCAGAACAACCCTCTGCTTATC CACGTGGACACCAAGGCGGGCCACGGGGCAGGAAAGCCCACAGCCAAAGTGATAGAAGAA GTCTCTGACATGTTCGCCTTCATAGCGCGGTGCCTGAACATCGACTGGATTCCGTAACTG ACATTCCCACTCCTCCAGCTGCGGAAAACCTCAAGGGCTGTCCCGCCATTAAAACGGAGA AACCACTGGACGTCACGCTTCCCCACACGAACACTCAGCCTGCACTCAGACTGCAGTTGA ACAGAACTGCCTCGGGGATTTTATCTTTTCTAGGCTTCTCCTTTTTAACTGGCCCTTGGC GTTTCTTTTCCGCCCTGTGCAGGCACATGTTTTGAAAGAAAAAAAAAAAAAAAAAAAAAG GCATGTTTGGATAAAGAGCTGAGTGGCAGCCCTCACATTGTGAATATGAGATTTTGCTGA ATTAAGAATCGTAGTTGGGCATACTTCATATATTGCACCTCAGTGGAAATTTGCTTCTAT CACGATAACCAATATATCTTTAAATAAATGTGGGAAGTGCTCTCATGAAAAAAAGACTTC TTTGCAACAATAATAAATGTTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGATGGGAAAAGTGATGGCACAGAAACATCCACCAATCTCCACCAAAAGCTCTACTAC CATGTCTTGGGAACCGATCAGTCAGAAGATATTTTGTGTGCTGAGTTTCCTGATGAGCCT AAGTGGATGGGTGGAGCTGAGTTATCCGACGATGGTCGCTACGTCTTGTTGTCAATAAGG GAGGGCTGCGACCCAGTGAACCGACTCTGGTACTGTGACCTGCAGCAGGAGTCCAATGGC ATCACCGGAATCCTGAAGTGGGTAAAACTGATCGACAACTTCGAAGGAGAATATGACTAC GTGACCAACGAGGGCACGGTCTTCACGTTCAAGACAAACCGCCATTCTCCCAACTACCGC CTGATCAACATTGACTTCACGGATCCCGAGGAGTCCAAGTGGAAGGTGCTCGTGCCTGAG CACGAGAAGGACGTCTTAGAATGGGTGGCTTGCGTCAGGTCCAACTTTTTGGTGCTGTGC TACCTCCATGATGTGAAGAATACCTTGCAGCTTCACGACCTGGCCACTGGTGCTCTCCTC AAGATCTTCCCGCTCGAGGTCGGCAGTGTCGTGGGCTACAGCGGTCAGAAGAAGGACACG GAAATCTTCTATCAGTTTACTTCCTTTTTATCTCCAGGTATCATTTATCACTGTGATCTG ACCAAAGAAGAACTGGAGCCAAGAGTGTTCCGCGAGGTGACGGTGAAAGGAATTGATGCT TCCGATTACCAGACGGTCCAGATTTTCTACCCTAGCAAGGATGGTACAAAGATCCCCATG TTCATCGTCCATAAAAAGGGCATAAAATTGGATGGCTCTCATCCTGCCTTCCTCTACGGC TACGGCGGCTTCAACATATCCATCACTCCCAACTACAGTGTGTCCAGGCTCATCTTTGTG AGGCACATGGGTGGTGTCCTTGCAGTGGCCAACATCCGAGGAGGCGGCGAATACGGAGAG ACGTGGCACAAAGGTGGTATCTTGGCCAATAAACAGAACTGCTTTGATGACTTTCAGTGT GCTGCTGAATATCTTATCAAGGAAGGTTACACATCTCCCAAGAGGCTAACTATTAACGGA GGTTCAAATGGAGGCCTCTTAGTAGCTACTTGTGCAAATCAACGACCTGACCTCTTTGGT TGTGTTATTGCTCAAGTTGGAGTAATGGACATGCTGAAGTTCCATAAATATACCATTGGT CATGCCTGGACCACCGATTATGGGTGCTCGGACAGCAAACAACACTTTGAATGGCTCATC AAATATTCTCCGTTGCACAACGTTAAGCTGCCAGAGGCAGACGACATCCAGTACCCATCC ATGCTTCTCCTCACCGCCGACCACGATGACCGAGTGGTCCCGCTTCACTCCCTCAAGTTC ATTGCCACCCTTCAGTACATCGTGGGCCGCAGCCGGAAGCAGAACAACCCTCTGCTTATC CACGTGGACACCAAGGCGGGCCACGGGGCAGGAAAGCCCACAGCCAAAGTGATAGAAGAA GTCTCTGACATGTTCGCCTTCATAGCGCGGTGCCTGAACATCGACTGGATTCCGTAACTG ACATTCCCACTCCTCCAGCTGCGGAAAACCTCAAGGGCTGTCCCGCCATTAAAACGGAGA AACCACTGGACGTCACGCTTCCCCACACGAACACTCAGCCTGCACTCAGACTGCAGTTGA ACAGAACTGCCTCGGGGATTTTATCTTTTCTAGGCTTCTCCTTTTTAACTGGCCCTTGGC GTTTCTTTTCCGCCCTGTGCAGGCACATGTTTTGAAAGAAAAAAAAAAAAAAAAAAAAAG GCATGTTTGGATAAAGAGCTGAGTGGCAGCCCTCACATTGTGAATATGAGATTTTGCTGA ATTAAGAATCGTAGTTGGGCATACTTCATATATTGCACCTCAGTGGAAATTTGCTTCTAT CACGATAACCAATATATCTTTAAATAAATGTGGGAAGTGCTCTCATGAAAAAAAGACTTC TTTGCAACAATAATAAATGTTATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 28-145, - strand, RNAz p=0.730616 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 28-145, - strand, RNAz p=0.730616 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 19-145, gnl|bosTau2|chr9 (26188793-26188667) | |
| 19-145, gnl|canFam2|chr12 (65796907-65797061) | |
| 19-145, gnl|danRer3|chrNA (95012596-95012710) | |
| 19-145, gnl|dasNov1|scaffold_1323 (43129-43284) | |
| 19-145, gnl|echTel1|scaffold_91471 (895-740) | |
| 19-145, gnl|fr1|chrUn (266369117-266368986) | |
| 19-145, gnl|galGal2|chr3 (67111201-67111048) | |
| 19-145, gnl|hg17|chr6 (105923446-105923601) | |
| 19-145, gnl|Hg17|chr6 (105923593-105923467) | |
| 19-145, gnl|loxAfr1|scaffold_19275 (37701-37546) | |
| 19-145, gnl|mm7|chr10 (44910845-44910701) | |
| 19-145, gnl|Mm7|chr10 (44910706-44910832) | |
| 19-145, gnl|monDom2|scaffold_0 (116227764-116227607) | |
| 19-145, gnl|oryCun1|scaffold_200207 (82625-82470) | |
| 19-145, gnl|panTro1|chr5 (108063912-108064067) | |
| 19-145, gnl|rheMac2|chr4 (101381130-101381285) | |
| 19-145, gnl|rn3|chr20 (49082745-49082601) | |
| 19-145, gnl|tetNig1|chr14 (3798907-3798776) | |
| 19-145, gnl|xenTro1|scaffold_599 (800219-800370) | |
| 438-639, gnl|bosTau2|chr9 (26151553-26151352) | |
| 438-639, gnl|canFam2|chr12 (65763657-65763906) | |
| 438-639, gnl|echTel1|scaffold_315622 (10197-10447) | |
| 438-639, gnl|fr1|chrUn (266369940-266369691) | |
| 438-639, gnl|galGal2|chr3 (67154073-67153812) | |
| 438-639, gnl|hg17|chr6 (105883383-105883632) | |
| 438-639, gnl|Hg17|chr6 (105883596-105883395) | |
| 438-639, gnl|loxAfr1|scaffold_216621 (377-632) | |
| 438-639, gnl|mm7|chr10 (44934170-44933935) | |
| 438-639, gnl|Mm7|chr10 (44933955-44934156) | |
| 438-639, gnl|monDom2|scaffold_0 (116292299-116292050) | |
| 438-639, gnl|oryCun1|scaffold_200207 (121694-121444) | |
| 438-639, gnl|panTro1|chr5 (108024641-108024890) | |
| 438-639, gnl|rheMac2|chr4 (101342072-101342322) | |
| 438-639, gnl|rn3|chr20 (49137543-49137305) | |
| 438-639, gnl|tetNig1|chr14 (3799741-3799540) | |
| 438-639, gnl|xenTro1|scaffold_599 (787259-787488) | |
| 737-899, gnl|bosTau2|chr9 (26109907-26109745) | |
| 737-899, gnl|Hg17|chr6 (105843467-105843296) | |
| 737-899, gnl|Mm7|chr10 (44961294-44961459) | |
| 972-1105, gnl|bosTau2|chr9 (26105417-26105284) | |
| 972-1105, gnl|canFam2|chr12 (65718938-65719099) | |
| 972-1105, gnl|danRer3|chrNA (241194919-241195057) | |
| 972-1105, gnl|echTel1|scaffold_11653 (652-817) | |
| 972-1105, gnl|fr1|chrUn (266370784-266370628) | |
| 972-1105, gnl|galGal2|chr3 (67181706-67181546) | |
| 972-1105, gnl|hg17|chr6 (105837015-105837176) | |
| 972-1105, gnl|Hg17|chr6 (105837152-105837019) | |
| 972-1105, gnl|mm7|chr10 (44966506-44966353) | |
| 972-1105, gnl|Mm7|chr10 (44966367-44966500) | |
| 972-1105, gnl|monDom2|scaffold_0 (116347364-116347207) | |
| 972-1105, gnl|oryCun1|scaffold_207263 (12231-12070) | |
| 972-1105, gnl|panTro1|chr5 (107882588-107882749) | |
| 972-1105, gnl|rheMac2|chr4 (101285417-101285578) | |
| 972-1105, gnl|rn3|chr20 (49168888-49168735) | |
| 972-1105, gnl|tetNig1|chr14 (3800571-3800429) | |
| 972-1105, gnl|xenTro1|scaffold_599 (755861-756013) | |
| 1259-2004, gnl|bosTau2|chr9 (26092584-26091848) | |
| 1259-2004, gnl|Hg17|chr6 (105833010-105832296) | |
| 1259-2004, gnl|Mm7|chr10 (44971542-44972301) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-145, gnl|bosTau2|chr9 (26188793-26188667) | |
| 19-145, gnl|canFam2|chr12 (65796907-65797061) | |
| 19-145, gnl|danRer3|chrNA (95012596-95012710) | |
| 19-145, gnl|dasNov1|scaffold_1323 (43129-43284) | |
| 19-145, gnl|echTel1|scaffold_91471 (895-740) | |
| 19-145, gnl|fr1|chrUn (266369117-266368986) | |
| 19-145, gnl|galGal2|chr3 (67111201-67111048) | |
| 19-145, gnl|hg17|chr6 (105923446-105923601) | |
| 19-145, gnl|Hg17|chr6 (105923593-105923467) | |
| 19-145, gnl|loxAfr1|scaffold_19275 (37701-37546) | |
| 19-145, gnl|mm7|chr10 (44910845-44910701) | |
| 19-145, gnl|Mm7|chr10 (44910706-44910832) | |
| 19-145, gnl|monDom2|scaffold_0 (116227764-116227607) | |
| 19-145, gnl|oryCun1|scaffold_200207 (82625-82470) | |
| 19-145, gnl|panTro1|chr5 (108063912-108064067) | |
| 19-145, gnl|rheMac2|chr4 (101381130-101381285) | |
| 19-145, gnl|rn3|chr20 (49082745-49082601) | |
| 19-145, gnl|tetNig1|chr14 (3798907-3798776) | |
| 19-145, gnl|xenTro1|scaffold_599 (800219-800370) | |
| 438-639, gnl|bosTau2|chr9 (26151553-26151352) | |
| 438-639, gnl|canFam2|chr12 (65763657-65763906) | |
| 438-639, gnl|echTel1|scaffold_315622 (10197-10447) | |
| 438-639, gnl|fr1|chrUn (266369940-266369691) | |
| 438-639, gnl|galGal2|chr3 (67154073-67153812) | |
| 438-639, gnl|hg17|chr6 (105883383-105883632) | |
| 438-639, gnl|Hg17|chr6 (105883596-105883395) | |
| 438-639, gnl|loxAfr1|scaffold_216621 (377-632) | |
| 438-639, gnl|mm7|chr10 (44934170-44933935) | |
| 438-639, gnl|Mm7|chr10 (44933955-44934156) | |
| 438-639, gnl|monDom2|scaffold_0 (116292299-116292050) | |
| 438-639, gnl|oryCun1|scaffold_200207 (121694-121444) | |
| 438-639, gnl|panTro1|chr5 (108024641-108024890) | |
| 438-639, gnl|rheMac2|chr4 (101342072-101342322) | |
| 438-639, gnl|rn3|chr20 (49137543-49137305) | |
| 438-639, gnl|tetNig1|chr14 (3799741-3799540) | |
| 438-639, gnl|xenTro1|scaffold_599 (787259-787488) | |
| 737-899, gnl|bosTau2|chr9 (26109907-26109745) | |
| 737-899, gnl|Hg17|chr6 (105843467-105843296) | |
| 737-899, gnl|Mm7|chr10 (44961294-44961459) | |
| 972-1105, gnl|bosTau2|chr9 (26105417-26105284) | |
| 972-1105, gnl|canFam2|chr12 (65718938-65719099) | |
| 972-1105, gnl|danRer3|chrNA (241194919-241195057) | |
| 972-1105, gnl|echTel1|scaffold_11653 (652-817) | |
| 972-1105, gnl|fr1|chrUn (266370784-266370628) | |
| 972-1105, gnl|galGal2|chr3 (67181706-67181546) | |
| 972-1105, gnl|hg17|chr6 (105837015-105837176) | |
| 972-1105, gnl|Hg17|chr6 (105837152-105837019) | |
| 972-1105, gnl|mm7|chr10 (44966506-44966353) | |
| 972-1105, gnl|Mm7|chr10 (44966367-44966500) | |
| 972-1105, gnl|monDom2|scaffold_0 (116347364-116347207) | |
| 972-1105, gnl|oryCun1|scaffold_207263 (12231-12070) | |
| 972-1105, gnl|panTro1|chr5 (107882588-107882749) | |
| 972-1105, gnl|rheMac2|chr4 (101285417-101285578) | |
| 972-1105, gnl|rn3|chr20 (49168888-49168735) | |
| 972-1105, gnl|tetNig1|chr14 (3800571-3800429) | |
| 972-1105, gnl|xenTro1|scaffold_599 (755861-756013) | |
| 1259-2004, gnl|bosTau2|chr9 (26092584-26091848) | |
| 1259-2004, gnl|Hg17|chr6 (105833010-105832296) | |
| 1259-2004, gnl|Mm7|chr10 (44971542-44972301) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| hlv (0.278513) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fty (0.17584) | |
| ton (0.1755) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.278513) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fty (0.17584) | |
| ton (0.1755) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| nbm (0.0993246) |