Ss1.1-Liv1-LVR010028E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGTGGTTCCGAGCAGCTAGCGGGTCCTCGGTGGACGCTGGCTCGGCGCCGCGGTGCTC GGTGGGACAGCGGCGGAGAGTGCCTTCGGGGTGAAGGGGTGGGGCTCGACGTCAGAAGCC AAAATGGCGGCGGTGGTCGCGGTCTCCTTGAAACGCTGGTTCCCGGCCACAACCCTTGGC GGAGCCTGCCTGCAGGCCTGCCGTGGGGCCCAGACAGCTGCAGCCACAGCTCCCCGAATC AAGAAATTTGCCATCTATCGATGGGACCCAGACAAGACTGGAGATAAACCTCATATGCAA ACTTATGAAATTGATTTGAATAACTGTGGTCCTATGGTGTTGGATGCGTTAATCAAGATT AAGAATGAAATTGATTCTACCTTGACCTTCCGAAGATCGTGTAGAGAAGGCATCTGCGGC TCCTGCGCCATGAACATCAACGGAGGCAACACTCTGGCTTGCACCCGAAGAATTGACACC AACCTCAACAAAGTTTCAAAAATCTACCCTCTTCCACATATGTATGTGATAAAGGATCTT GTTCCTGATTTGAGCAATTTCTATGCTCAGTACAAATCCATCGAGCCTTATCTAAAGAAG AAGGATGAATCCCAGGAAGGCAAGCAGCAGTACCTGCAGTCCATAGAGGAGCGCGAGAAA CTGGATGGGCTGTACGAGTGTATTCTTTGCGCCTGCTGCAGCACCAGCTGCCCGAGCTAC TGGTGGAATGGAGACAAGTACCTGGGACCCGCAGTCCTCATGCAGGCCTATCGCTGGATG ATCGACTCCAGAGATGACTTCACGGAGGAGCGCCTGGCCAAGCTGCAGGACCCGTTCTCT CTGTACCGCTGCCACACCATCATGAACTGCACGGGGACCTGTCCCAAGGGGCTGAATCCA GGGAAAGCTATTGCTGAAATCAAGAAAATGATGGCAACCTACAAGGAGAAGAAAGCTTCA GCCTGACTGTTCCCAACCTAACGTGACTGTAACCAGCTCAACTGAACGTTAATTTACATC TAATTTGAGTTCCTTCAAAGGTCTTTGATTTTCCACAAATACTGCATGTACAATAAAAAT TTTAAGAAATAAATGTTATTCTACTTTATTAGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGTGGTTCCGAGCAGCTAGCGGGTCCTCGGTGGACGCTGGCTCGGCGCCGCGGTGCTC GGTGGGACAGCGGCGGAGAGTGCCTTCGGGGTGAAGGGGTGGGGCTCGACGTCAGAAGCC AAAATGGCGGCGGTGGTCGCGGTCTCCTTGAAACGCTGGTTCCCGGCCACAACCCTTGGC GGAGCCTGCCTGCAGGCCTGCCGTGGGGCCCAGACAGCTGCAGCCACAGCTCCCCGAATC AAGAAATTTGCCATCTATCGATGGGACCCAGACAAGACTGGAGATAAACCTCATATGCAA ACTTATGAAATTGATTTGAATAACTGTGGTCCTATGGTGTTGGATGCGTTAATCAAGATT AAGAATGAAATTGATTCTACCTTGACCTTCCGAAGATCGTGTAGAGAAGGCATCTGCGGC TCCTGCGCCATGAACATCAACGGAGGCAACACTCTGGCTTGCACCCGAAGAATTGACACC AACCTCAACAAAGTTTCAAAAATCTACCCTCTTCCACATATGTATGTGATAAAGGATCTT GTTCCTGATTTGAGCAATTTCTATGCTCAGTACAAATCCATCGAGCCTTATCTAAAGAAG AAGGATGAATCCCAGGAAGGCAAGCAGCAGTACCTGCAGTCCATAGAGGAGCGCGAGAAA CTGGATGGGCTGTACGAGTGTATTCTTTGCGCCTGCTGCAGCACCAGCTGCCCGAGCTAC TGGTGGAATGGAGACAAGTACCTGGGACCCGCAGTCCTCATGCAGGCCTATCGCTGGATG ATCGACTCCAGAGATGACTTCACGGAGGAGCGCCTGGCCAAGCTGCAGGACCCGTTCTCT CTGTACCGCTGCCACACCATCATGAACTGCACGGGGACCTGTCCCAAGGGGCTGAATCCA GGGAAAGCTATTGCTGAAATCAAGAAAATGATGGCAACCTACAAGGAGAAGAAAGCTTCA GCCTGACTGTTCCCAACCTAACGTGACTGTAACCAGCTCAACTGAACGTTAATTTACATC TAATTTGAGTTCCTTCAAAGGTCTTTGATTTTCCACAAATACTGCATGTACAATAAAAAT TTTAAGAAATAAATGTTATTCTACTTTATTAGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 193-311, - strand, RNAz p=0.754602 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 193-311, - strand, RNAz p=0.754602 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 193-326, gnl|bosTau2|chr2 (86177397-86177530) | |
| 193-326, gnl|canFam2|chr2 (84063975-84063830) | |
| 193-326, gnl|danRer3|chr5 (34065146-34065297) | |
| 193-326, gnl|dasNov1|scaffold_1124 (68032-67887) | |
| 193-326, gnl|echTel1|scaffold_26009 (3197-3341) | |
| 193-326, gnl|fr1|chrUn (46225650-46225504) | |
| 193-326, gnl|galGal2|chr21 (149960-149815) | |
| 193-326, gnl|hg17|chr1 (17116550-17116695) | |
| 193-326, gnl|Hg17|chr1 (17116692-17116559) | |
| 193-326, gnl|mm7|chr4 (140345081-140344938) | |
| 193-326, gnl|Mm7|chr4 (140344939-140345072) | |
| 193-326, gnl|monDom2|scaffold_109 (2325455-2325312) | |
| 193-326, gnl|oryCun1|scaffold_117556 (8585-8730) | |
| 193-326, gnl|panTro1|chr1 (17288280-17288425) | |
| 193-326, gnl|rheMac2|chr1 (19671227-19671372) | |
| 193-326, gnl|rn3|chr5 (159834843-159834701) | |
| 193-326, gnl|tetNig1|chr11 (5792128-5792272) | |
| 193-326, gnl|xenTro1|scaffold_1056 (207779-207935) | |
| 408-547, gnl|bosTau2|chr2 (86156413-86156552) | |
| 408-547, gnl|canFam2|chr2 (84077899-84077718) | |
| 408-547, gnl|danRer3|chr5 (34063778-34063978) | |
| 408-547, gnl|dasNov1|scaffold_35589 (364-189) | |
| 408-547, gnl|echTel1|scaffold_231219 (10181-10360) | |
| 408-547, gnl|fr1|chrUn (46226151-46225972) | |
| 408-547, gnl|galGal2|chr21 (153370-153183) | |
| 408-547, gnl|hg17|chr1 (17100396-17100576) | |
| 408-547, gnl|Hg17|chr1 (17100539-17100400) | |
| 408-547, gnl|loxAfr1|scaffold_6872 (11590-11412) | |
| 408-547, gnl|mm7|chr4 (140351467-140351314) | |
| 408-547, gnl|Mm7|chr4 (140351322-140351461) | |
| 408-547, gnl|monDom2|scaffold_109 (2331216-2331064) | |
| 408-547, gnl|oryCun1|scaffold_108525 (2971-3149) | |
| 408-547, gnl|panTro1|chr1 (17271986-17272164) | |
| 408-547, gnl|rheMac2|chr1 (19656826-19657006) | |
| 408-547, gnl|rn3|chr5 (159843736-159843567) | |
| 408-547, gnl|tetNig1|chr11 (5791708-5791870) | |
| 408-547, gnl|xenTro1|scaffold_1056 (206988-207144) | |
| 763-889, gnl|bosTau2|chr2 (86160757-86160883) | |
| 763-889, gnl|canFam2|chr2 (84083527-84083369) | |
| 763-889, gnl|danRer3|chr5 (34062437-34062568) | |
| 763-889, gnl|dasNov1|scaffold_35589 (5442-5292) | |
| 763-889, gnl|echTel1|scaffold_231219 (5586-5739) | |
| 763-889, gnl|fr1|chrUn (46227159-46227031) | |
| 763-889, gnl|galGal2|chr21 (155652-155520) | |
| 763-889, gnl|hg17|chr1 (17094407-17094556) | |
| 763-889, gnl|Hg17|chr1 (17094534-17094408) | |
| 763-889, gnl|loxAfr1|scaffold_6872 (16908-16758) | |
| 763-889, gnl|mm7|chr4 (140355945-140355796) | |
| 763-889, gnl|Mm7|chr4 (140355816-140355942) | |
| 763-889, gnl|monDom2|scaffold_109 (2336366-2336217) | |
| 763-889, gnl|oryCun1|scaffold_199851 (10880-10998) | |
| 763-889, gnl|panTro1|chr1 (17266023-17266172) | |
| 763-889, gnl|rheMac2|chr1 (19650551-19650701) | |
| 763-889, gnl|rn3|chr5 (159848386-159848237) | |
| 763-889, gnl|tetNig1|chr11 (5790931-5791058) | |
| 763-889, gnl|xenTro1|scaffold_1056 (205308-205439) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 193-326, gnl|bosTau2|chr2 (86177397-86177530) | |
| 193-326, gnl|canFam2|chr2 (84063975-84063830) | |
| 193-326, gnl|danRer3|chr5 (34065146-34065297) | |
| 193-326, gnl|dasNov1|scaffold_1124 (68032-67887) | |
| 193-326, gnl|echTel1|scaffold_26009 (3197-3341) | |
| 193-326, gnl|fr1|chrUn (46225650-46225504) | |
| 193-326, gnl|galGal2|chr21 (149960-149815) | |
| 193-326, gnl|hg17|chr1 (17116550-17116695) | |
| 193-326, gnl|Hg17|chr1 (17116692-17116559) | |
| 193-326, gnl|mm7|chr4 (140345081-140344938) | |
| 193-326, gnl|Mm7|chr4 (140344939-140345072) | |
| 193-326, gnl|monDom2|scaffold_109 (2325455-2325312) | |
| 193-326, gnl|oryCun1|scaffold_117556 (8585-8730) | |
| 193-326, gnl|panTro1|chr1 (17288280-17288425) | |
| 193-326, gnl|rheMac2|chr1 (19671227-19671372) | |
| 193-326, gnl|rn3|chr5 (159834843-159834701) | |
| 193-326, gnl|tetNig1|chr11 (5792128-5792272) | |
| 193-326, gnl|xenTro1|scaffold_1056 (207779-207935) | |
| 408-547, gnl|bosTau2|chr2 (86156413-86156552) | |
| 408-547, gnl|canFam2|chr2 (84077899-84077718) | |
| 408-547, gnl|danRer3|chr5 (34063778-34063978) | |
| 408-547, gnl|dasNov1|scaffold_35589 (364-189) | |
| 408-547, gnl|echTel1|scaffold_231219 (10181-10360) | |
| 408-547, gnl|fr1|chrUn (46226151-46225972) | |
| 408-547, gnl|galGal2|chr21 (153370-153183) | |
| 408-547, gnl|hg17|chr1 (17100396-17100576) | |
| 408-547, gnl|Hg17|chr1 (17100539-17100400) | |
| 408-547, gnl|loxAfr1|scaffold_6872 (11590-11412) | |
| 408-547, gnl|mm7|chr4 (140351467-140351314) | |
| 408-547, gnl|Mm7|chr4 (140351322-140351461) | |
| 408-547, gnl|monDom2|scaffold_109 (2331216-2331064) | |
| 408-547, gnl|oryCun1|scaffold_108525 (2971-3149) | |
| 408-547, gnl|panTro1|chr1 (17271986-17272164) | |
| 408-547, gnl|rheMac2|chr1 (19656826-19657006) | |
| 408-547, gnl|rn3|chr5 (159843736-159843567) | |
| 408-547, gnl|tetNig1|chr11 (5791708-5791870) | |
| 408-547, gnl|xenTro1|scaffold_1056 (206988-207144) | |
| 763-889, gnl|bosTau2|chr2 (86160757-86160883) | |
| 763-889, gnl|canFam2|chr2 (84083527-84083369) | |
| 763-889, gnl|danRer3|chr5 (34062437-34062568) | |
| 763-889, gnl|dasNov1|scaffold_35589 (5442-5292) | |
| 763-889, gnl|echTel1|scaffold_231219 (5586-5739) | |
| 763-889, gnl|fr1|chrUn (46227159-46227031) | |
| 763-889, gnl|galGal2|chr21 (155652-155520) | |
| 763-889, gnl|hg17|chr1 (17094407-17094556) | |
| 763-889, gnl|Hg17|chr1 (17094534-17094408) | |
| 763-889, gnl|loxAfr1|scaffold_6872 (16908-16758) | |
| 763-889, gnl|mm7|chr4 (140355945-140355796) | |
| 763-889, gnl|Mm7|chr4 (140355816-140355942) | |
| 763-889, gnl|monDom2|scaffold_109 (2336366-2336217) | |
| 763-889, gnl|oryCun1|scaffold_199851 (10880-10998) | |
| 763-889, gnl|panTro1|chr1 (17266023-17266172) | |
| 763-889, gnl|rheMac2|chr1 (19650551-19650701) | |
| 763-889, gnl|rn3|chr5 (159848386-159848237) | |
| 763-889, gnl|tetNig1|chr11 (5790931-5791058) | |
| 763-889, gnl|xenTro1|scaffold_1056 (205308-205439) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| hea (1.84049) | |
| ssp (1.62624) | |
| tbr (1.23343) | |
| hlv (1.11405) | |
| ste (1.08167) | |
| ldo (1.06703) | |
| duo (0.864006) | |
| fat (0.737137) | |
| vin (0.665115) | |
| sme (0.610874) | |
| bfe (0.599431) | |
| ill (0.526778) | |
| ret (0.514933) | |
| pro (0.512033) | |
| cje (0.495704) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| nms (0.427716) | |
| mas (0.42061) | |
| fli (0.405762) | |
| jej (0.395687) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| bla (0.373042) | |
| sag (0.36543) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| nje (0.33184) | |
| nco (0.323468) | |
| isp (0.300752) | |
| eje (0.296501) | |
| lin (0.291206) | |
| spl (0.286369) | |
| che (0.272628) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| kid (0.259471) | |
| tra (0.246184) | |
| med (0.232504) | |
| jca (0.22792) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (1.84049) | |
| ssp (1.62624) | |
| tbr (1.23343) | |
| hlv (1.11405) | |
| ste (1.08167) | |
| ldo (1.06703) | |
| duo (0.864006) | |
| fat (0.737137) | |
| vin (0.665115) | |
| sme (0.610874) | |
| bfe (0.599431) | |
| ill (0.526778) | |
| ret (0.514933) | |
| pro (0.512033) | |
| cje (0.495704) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| nms (0.427716) | |
| mas (0.42061) | |
| fli (0.405762) | |
| jej (0.395687) | |
| nlu (0.383362) | |
| ese (0.379507) | |
| bla (0.373042) | |
| sag (0.36543) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| nje (0.33184) | |
| nco (0.323468) | |
| isp (0.300752) | |
| eje (0.296501) | |
| lin (0.291206) | |
| spl (0.286369) | |
| che (0.272628) | |
| lyg (0.266205) | |
| nmm (0.265604) | |
| kid (0.259471) | |
| tra (0.246184) | |
| med (0.232504) | |
| jca (0.22792) | |
| tes (0.207814) | |
| aor (0.195274) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) |