Non-Coding RNA Search

Ss1.1-Liv1-LVR010029G07.5

Sequence:


               
               CTGTGGGGACCTTGAGAAGCAGCGCCAAGACAAGATGCGAGAGGAAGGTCTCCAGCTGGT
GATCAAGATCCGGGAAGGAGAAGCTGGAGGAGCTAGTCCAGAAGAGGTCTTCTCAGCTCT
GCAGTACTCGGGCACCGAGGTGCCCCTGCAGTGGCTGCACTCAGAGCTACCCTACGTGCT
GGAGATGGTGGCCGAGCTGGCTGGACAGCAAGACCCGGGGCTGGGTGTCTTTTCCTGTCA
GGAGGCCCGGAAAGCCTGGCTGGATCGTCACGACAATCTGGATGAGGCTGTGGAAGAGTG
TGTGAGGGCCCGGCGGAGGAAGGTGCAGGAGCTCCGGTCCCTGGGCTTTGGGCCCGAGGA
GGGGTCTCTTCAAGCCTTGTTTCAACACGGGGGTGATGTGGCACGGGCCCTAACTGAGCT
ACAGCGCCAGCGCCTAGAGCCCTTCCATCAGCGCCTCTGGGACAGTGGCCCTGAGCCCAC
CCCTTCCTGGGATGGGCCTGATAAGCAGAGCCTGGTCAGACGGCTTTTGGCAGTCCATGC
ACTCCCCAGCTGGGGCCGGGCAGAGCTGGCACTGCCATTGCTGCAGGAGACACCCAGGAA
CTATGAGTTGGGGGACGTGGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGGGACCTTGAGAAGCAGCGCCAAGACAAGATGCGAGAGGAAGGTCTCCAGCTGGT
GATCAAGATCCGGGAAGGAGAAGCTGGAGGAGCTAGTCCAGAAGAGGTCTTCTCAGCTCT
GCAGTACTCGGGCACCGAGGTGCCCCTGCAGTGGCTGCACTCAGAGCTACCCTACGTGCT
GGAGATGGTGGCCGAGCTGGCTGGACAGCAAGACCCGGGGCTGGGTGTCTTTTCCTGTCA
GGAGGCCCGGAAAGCCTGGCTGGATCGTCACGACAATCTGGATGAGGCTGTGGAAGAGTG
TGTGAGGGCCCGGCGGAGGAAGGTGCAGGAGCTCCGGTCCCTGGGCTTTGGGCCCGAGGA
GGGGTCTCTTCAAGCCTTGTTTCAACACGGGGGTGATGTGGCACGGGCCCTAACTGAGCT
ACAGCGCCAGCGCCTAGAGCCCTTCCATCAGCGCCTCTGGGACAGTGGCCCTGAGCCCAC
CCCTTCCTGGGATGGGCCTGATAAGCAGAGCCTGGTCAGACGGCTTTTGGCAGTCCATGC
ACTCCCCAGCTGGGGCCGGGCAGAGCTGGCACTGCCATTGCTGCAGGAGACACCCAGGAA
CTATGAGTTGGGGGACGTGGTGGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               73-332, gnl|bosTau2|chr10 (12358463-12358204)
               

               
               73-332, gnl|canFam2|chr8 (7150698-7150904)
               

               
               73-332, gnl|echTel1|scaffold_316077 (34295-34501)
               

               
               73-332, gnl|hg17|chr14 (23690179-23690385)
               

               
               73-332, gnl|Hg17|chr14 (23690179-23690436)
               

               
               73-332, gnl|loxAfr1|scaffold_1306 (124566-124772)
               

               
               73-332, gnl|mm7|chr14 (50463354-50463560)
               

               
               73-332, gnl|Mm7|chr14 (50463354-50463610)
               

               
               73-332, gnl|monDom2|scaffold_12 (25611427-25611221)
               

               
               73-332, gnl|panTro1|chr15 (22590758-22590964)
               

               
               73-332, gnl|rheMac2|chr7 (87044798-87045004)
               

               
               73-332, gnl|rn3|chr15 (33747552-33747758)
               

               
               73-332, gnl|xenTro1|scaffold_53 (470242-470451)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-332, gnl|bosTau2|chr10 (12358463-12358204)
               

               
               73-332, gnl|canFam2|chr8 (7150698-7150904)
               

               
               73-332, gnl|echTel1|scaffold_316077 (34295-34501)
               

               
               73-332, gnl|hg17|chr14 (23690179-23690385)
               

               
               73-332, gnl|Hg17|chr14 (23690179-23690436)
               

               
               73-332, gnl|loxAfr1|scaffold_1306 (124566-124772)
               

               
               73-332, gnl|mm7|chr14 (50463354-50463560)
               

               
               73-332, gnl|Mm7|chr14 (50463354-50463610)
               

               
               73-332, gnl|monDom2|scaffold_12 (25611427-25611221)
               

               
               73-332, gnl|panTro1|chr15 (22590758-22590964)
               

               
               73-332, gnl|rheMac2|chr7 (87044798-87045004)
               

               
               73-332, gnl|rn3|chr15 (33747552-33747758)
               

               
               73-332, gnl|xenTro1|scaffold_53 (470242-470451)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	73-332, gnl\|bosTau2\|chr10 (12358463-12358204)
	73-332, gnl\|canFam2\|chr8 (7150698-7150904)
	73-332, gnl\|echTel1\|scaffold_316077 (34295-34501)
	73-332, gnl\|hg17\|chr14 (23690179-23690385)
	73-332, gnl\|Hg17\|chr14 (23690179-23690436)
	73-332, gnl\|loxAfr1\|scaffold_1306 (124566-124772)
	73-332, gnl\|mm7\|chr14 (50463354-50463560)
	73-332, gnl\|Mm7\|chr14 (50463354-50463610)
	73-332, gnl\|monDom2\|scaffold_12 (25611427-25611221)
	73-332, gnl\|panTro1\|chr15 (22590758-22590964)
	73-332, gnl\|rheMac2\|chr7 (87044798-87045004)
	73-332, gnl\|rn3\|chr15 (33747552-33747758)
	73-332, gnl\|xenTro1\|scaffold_53 (470242-470451)