Ss1.1-Liv1-LVR010033B02.5
|
AGTCGCCGCCTGCACTCGCCGGCCTCCTATCTGCGCGAGCCCACGCATTTCCCCAGCCTC
CTTACTTCACCTCTGCACTCGCCGGCCTCCTATCTGCGCGAGCCCACGCATTTCCCCAGG
CACTTCACCAGCTGCAGGTATGGCGGGCGTGGAGCAGCACGAGGGCACCATCCAGGTGCA
GGGCCAGAGCCTTTTCTTCCGAGAGGCTCGGCCTGGCAGTGGGCAGGCCGCCCGCTTCTC
TGTGCTGCTGTTGCATGGCATACGCTTCTCCTCCGAGACCTGGCAGAACCTGGGCACGCT
GCACAGGCTGGCCGAGGCTGGCTACCGGGCTGTGGCCATTGACCTGCCAGGTCTGGGGCG
CTCCAAGGAAGCAACCCCTGCCCCTATTGGGGAGCTGGTCCCCAGCAGTTTCCTGGCAGC
TGTGGTGGATGCCTTGGACCTGGGCCCCCCAGTTGTGGTCAGCCCATCGTTGAGTGGCAT
GTACTCCCTGCTCTTCCTCACTGCCCCAGACTCCCAGCTCCGAGGCTATGTGCCAGTGGC
CCCCATCTGCACTGACAAAATCAATGCTGCCGACTATGCCAGAGTGAAGACCTCGGTTCT
TATTGTATATGGAGACCAGGACCCCATGGGTCAGACCAGCTTTGAGCACCTGAAGCAGCT
GCCCAATCACCGGGTGTTGGTCATGGAGGGGGCAGGGCACCCCTGTTACCTTGACAAACC
TGAGCAGTGGCACACAGGGCTGCTGGATTTTCTGAAAGGGCTGGCATGAGGCTCAGCCCT
GCGGATGGGGGTGGGCCACTTGCCTGCCTTGGGCTCTCTCTTGCTCATTCTCTCCTTCCC
TCCGTGGGCTCCTGCTCTTCATGCACATACAACAGGTGTGTCTATCTGGGTTCTTGTCTT
CTAGGGTCTGTCTTTTCCTCTTCTTTCTCTTTCAGTAACAGACTGAAAAAGTGAAGTCAA
GCAAAAAAAAAAGTCAGTAATCAAGGGACATAATCTGGTGGAGGGTAATTAATTCATTAG
ATGACCTTCTCCTATAGGCTTCTCCCAGCCTCCCCCCACCTCCCACCTCCTCCTTTGGCT
TCCCTGCTGGGCACACACACACCCCTACCTCCACCCCTTAGACCATAGATACATACATGC
CCACATTCATGCTTACACATTAGAACCGTCTATGTTCCCAAATATGATCCATCACTTGAG
GCAACCACACAGGTACATGCAGCTCTGAGCTGACACTAACACACACACAGTCACTTTGCA
CTGCATACACAAACACACACATGCTCTGCCCCCGCACAAGGACTTGCACAGGCACATGCT
GCTCTCCCCAACCATGCAGCACCCCATGTCTAGGAAGATGGGGACCCCATGGTCCAGCCC
TTTCAGGAGACTCTCTGCCAGGTTTAGGGTGCCACCAGCTCTGAACTTCATTCACCCACA
GGTTGCAGGAATGACCCCAAAAGGGAAGGACCACCCCTTCAACCCTCAGATTTCCAGCCT
CCTTCTGGGTATTCCACAGCTTCCCAGGTTATTAGGCCTGGGTTTTTCTCAGCCAAGCTA
GATTCCTGCTCTGAGGTTTGGGGGATGGGGAGACAGAGTGGAGGTCTGCGAAATAAAGTG
ATGCAATTAGAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTCGCCGCCTGCACTCGCCGGCCTCCTATCTGCGCGAGCCCACGCATTTCCCCAGCCTC
CTTACTTCACCTCTGCACTCGCCGGCCTCCTATCTGCGCGAGCCCACGCATTTCCCCAGG
CACTTCACCAGCTGCAGGTATGGCGGGCGTGGAGCAGCACGAGGGCACCATCCAGGTGCA
GGGCCAGAGCCTTTTCTTCCGAGAGGCTCGGCCTGGCAGTGGGCAGGCCGCCCGCTTCTC
TGTGCTGCTGTTGCATGGCATACGCTTCTCCTCCGAGACCTGGCAGAACCTGGGCACGCT
GCACAGGCTGGCCGAGGCTGGCTACCGGGCTGTGGCCATTGACCTGCCAGGTCTGGGGCG
CTCCAAGGAAGCAACCCCTGCCCCTATTGGGGAGCTGGTCCCCAGCAGTTTCCTGGCAGC
TGTGGTGGATGCCTTGGACCTGGGCCCCCCAGTTGTGGTCAGCCCATCGTTGAGTGGCAT
GTACTCCCTGCTCTTCCTCACTGCCCCAGACTCCCAGCTCCGAGGCTATGTGCCAGTGGC
CCCCATCTGCACTGACAAAATCAATGCTGCCGACTATGCCAGAGTGAAGACCTCGGTTCT
TATTGTATATGGAGACCAGGACCCCATGGGTCAGACCAGCTTTGAGCACCTGAAGCAGCT
GCCCAATCACCGGGTGTTGGTCATGGAGGGGGCAGGGCACCCCTGTTACCTTGACAAACC
TGAGCAGTGGCACACAGGGCTGCTGGATTTTCTGAAAGGGCTGGCATGAGGCTCAGCCCT
GCGGATGGGGGTGGGCCACTTGCCTGCCTTGGGCTCTCTCTTGCTCATTCTCTCCTTCCC
TCCGTGGGCTCCTGCTCTTCATGCACATACAACAGGTGTGTCTATCTGGGTTCTTGTCTT
CTAGGGTCTGTCTTTTCCTCTTCTTTCTCTTTCAGTAACAGACTGAAAAAGTGAAGTCAA
GCAAAAAAAAAAGTCAGTAATCAAGGGACATAATCTGGTGGAGGGTAATTAATTCATTAG
ATGACCTTCTCCTATAGGCTTCTCCCAGCCTCCCCCCACCTCCCACCTCCTCCTTTGGCT
TCCCTGCTGGGCACACACACACCCCTACCTCCACCCCTTAGACCATAGATACATACATGC
CCACATTCATGCTTACACATTAGAACCGTCTATGTTCCCAAATATGATCCATCACTTGAG
GCAACCACACAGGTACATGCAGCTCTGAGCTGACACTAACACACACACAGTCACTTTGCA
CTGCATACACAAACACACACATGCTCTGCCCCCGCACAAGGACTTGCACAGGCACATGCT
GCTCTCCCCAACCATGCAGCACCCCATGTCTAGGAAGATGGGGACCCCATGGTCCAGCCC
TTTCAGGAGACTCTCTGCCAGGTTTAGGGTGCCACCAGCTCTGAACTTCATTCACCCACA
GGTTGCAGGAATGACCCCAAAAGGGAAGGACCACCCCTTCAACCCTCAGATTTCCAGCCT
CCTTCTGGGTATTCCACAGCTTCCCAGGTTATTAGGCCTGGGTTTTTCTCAGCCAAGCTA
GATTCCTGCTCTGAGGTTTGGGGGATGGGGAGACAGAGTGGAGGTCTGCGAAATAAAGTG
ATGCAATTAGAAAAAAAAAAAAAA
|
|
gi|27753960|ref|NP_083907.2| |
Protein identifier
|
gi|27753960|ref|NP_083907.2| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3' of NM_032750, + |
|
5' of NM_032750, + |
Human gene identifier and UTR site,
human gene reading direction
|
3' of NM_032750, + |
|
5' of NM_032750, + |
|
131-352, gnl|bosTau2|chr22 (36481410-36481189) |
|
131-352, gnl|Hg17|chr3 (51980784-51980514) |
|
131-352, gnl|Mm7|chr9 (106179438-106179681) |
| |
|
588-1448, gnl|bosTau2|chr22 (36479373-36478503) |
|
588-1448, gnl|Hg17|chr3 (51978663-51977764) |
|
588-1448, gnl|Mm7|chr9 (106181430-106182174) |
| |
|
1463-1631, gnl|bosTau2|chr22 (36478465-36478311) |
|
1463-1631, gnl|canFam2|chr20 (40743478-40743120) |
|
1463-1631, gnl|dasNov1|scaffold_40779 (10120-10507) |
|
1463-1631, gnl|echTel1|scaffold_274482 (3256-3014) |
|
1463-1631, gnl|hg17|chr3 (51977572-51977954) |
|
1463-1631, gnl|Hg17|chr3 (51977732-51977571) |
|
1463-1631, gnl|loxAfr1|scaffold_49649 (16635-16270) |
|
1463-1631, gnl|mm7|chr9 (106182367-106182053) |
|
1463-1631, gnl|Mm7|chr9 (106182212-106182366) |
|
1463-1631, gnl|panTro1|chr2 (53587324-53587710) |
|
1463-1631, gnl|rheMac2|chr2 (84429099-84428712) |
|
1463-1631, gnl|rn3|chr8 (111615822-111615415) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
131-352, gnl|bosTau2|chr22 (36481410-36481189) |
|
131-352, gnl|Hg17|chr3 (51980784-51980514) |
|
131-352, gnl|Mm7|chr9 (106179438-106179681) |
| |
|
588-1448, gnl|bosTau2|chr22 (36479373-36478503) |
|
588-1448, gnl|Hg17|chr3 (51978663-51977764) |
|
588-1448, gnl|Mm7|chr9 (106181430-106182174) |
| |
|
1463-1631, gnl|bosTau2|chr22 (36478465-36478311) |
|
1463-1631, gnl|canFam2|chr20 (40743478-40743120) |
|
1463-1631, gnl|dasNov1|scaffold_40779 (10120-10507) |
|
1463-1631, gnl|echTel1|scaffold_274482 (3256-3014) |
|
1463-1631, gnl|hg17|chr3 (51977572-51977954) |
|
1463-1631, gnl|Hg17|chr3 (51977732-51977571) |
|
1463-1631, gnl|loxAfr1|scaffold_49649 (16635-16270) |
|
1463-1631, gnl|mm7|chr9 (106182367-106182053) |
|
1463-1631, gnl|Mm7|chr9 (106182212-106182366) |
|
1463-1631, gnl|panTro1|chr2 (53587324-53587710) |
|
1463-1631, gnl|rheMac2|chr2 (84429099-84428712) |
|
1463-1631, gnl|rn3|chr8 (111615822-111615415) |
|
amn (0.417711) |
|
eru (0.360144) |
|
che (0.272628) |
|
cty (0.20816) |
|
fli (0.202881) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cli (0.152812) |
|
nca (0.136874) |
|
kid (0.129735) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
amn (0.417711) |
|
eru (0.360144) |
|
che (0.272628) |
|
cty (0.20816) |
|
fli (0.202881) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cli (0.152812) |
|
nca (0.136874) |
|
kid (0.129735) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
