Ss1.1-Liv1-LVR010034B03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTACAAGATGGCGGATCTGTAGCAGTTACCGCTGCCGCCACCGCCGCTACCGTTTCTCAA GAGTGAGAGAGGCGGACTAGGTGAACGAGGAGGCGGCGGCTGGAGTAGTGGGGACAGCAG CCACCATGTCGGATACGAGGCGGCGAGTGAAGGTCTATACCCTGAACGAAGACCGGCAAT GGGACGACCGAGGCACCGGGCACGTCTCCTCCACTTATGTGGAGGAGCTCAAGGGGATGT CGCTGCTGGTTCGGGCAGAGTCCGACGGATCACTACTCTTGGAATCAAAGATAAATCCAA ACACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCAGAAGCTGAAAACTATG ATCTGGCACTAAGTTTTCAGGAAAAGGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTC AGGTTCAAGGTAAGGATCCATCAGTGGAAGTCACACAGGACCTCATTGATGAATCAGAAG AAGAACGATTTGAAGAAATGCCTGAAACCAGTCATATGATTGACTTACCCACATGTGAAC TCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTA GGGAAAAGCTGGCTCTGGCCTTGGAAAATGAAGGCTATATTAAAAAACTACTGCAGCTCT TCCAAGCTTGTGAGAACCTAGAAAACACTGAAGGCTTACACCATTTGTATGAAATTATTA GAGGAATCTTATTCCTAAATAAGGCAACTCTGTTTGAGGTAATGTTTTCTGATGAGTGTA TCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCGTTGGCTCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTACAAGATGGCGGATCTGTAGCAGTTACCGCTGCCGCCACCGCCGCTACCGTTTCTCAA GAGTGAGAGAGGCGGACTAGGTGAACGAGGAGGCGGCGGCTGGAGTAGTGGGGACAGCAG CCACCATGTCGGATACGAGGCGGCGAGTGAAGGTCTATACCCTGAACGAAGACCGGCAAT GGGACGACCGAGGCACCGGGCACGTCTCCTCCACTTATGTGGAGGAGCTCAAGGGGATGT CGCTGCTGGTTCGGGCAGAGTCCGACGGATCACTACTCTTGGAATCAAAGATAAATCCAA ACACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCAGAAGCTGAAAACTATG ATCTGGCACTAAGTTTTCAGGAAAAGGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTC AGGTTCAAGGTAAGGATCCATCAGTGGAAGTCACACAGGACCTCATTGATGAATCAGAAG AAGAACGATTTGAAGAAATGCCTGAAACCAGTCATATGATTGACTTACCCACATGTGAAC TCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTA GGGAAAAGCTGGCTCTGGCCTTGGAAAATGAAGGCTATATTAAAAAACTACTGCAGCTCT TCCAAGCTTGTGAGAACCTAGAAAACACTGAAGGCTTACACCATTTGTATGAAATTATTA GAGGAATCTTATTCCTAAATAAGGCAACTCTGTTTGAGGTAATGTTTTCTGATGAGTGTA TCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCGTTGGCTCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 29-145, - strand, RNAz p=0.894279 | |
| 151-268, + strand, RNAz p=0.523952 | |
| 416-534, - strand, RNAz p=0.560606 | |
| 575-694, - strand, RNAz p=0.845667 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 29-145, - strand, RNAz p=0.894279 | |
| 151-268, + strand, RNAz p=0.523952 | |
| 416-534, - strand, RNAz p=0.560606 | |
| 575-694, - strand, RNAz p=0.845667 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC045714, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 29-268, gnl|bosTau2|chr11 (20649608-20649369) | |
| 29-268, gnl|canFam2|chr10 (59615930-59616103) | |
| 29-268, gnl|danRer3|chr20 (42162519-42162685) | |
| 29-268, gnl|dasNov1|scaffold_169508 (4603-4777) | |
| 29-268, gnl|echTel1|scaffold_280310 (43671-43845) | |
| 29-268, gnl|fr1|chrUn (46926898-46927066) | |
| 29-268, gnl|galGal2|chr3 (2214964-2214798) | |
| 29-268, gnl|hg17|chr2 (55755914-55756088) | |
| 29-268, gnl|Hg17|chr2 (55756172-55755930) | |
| 29-268, gnl|loxAfr1|scaffold_244 (150562-150391) | |
| 29-268, gnl|mm7|chr11 (29125472-29125298) | |
| 29-268, gnl|Mm7|chr11 (29125215-29125454) | |
| 29-268, gnl|monDom2|scaffold_1 (18579970-18580152) | |
| 29-268, gnl|oryCun1|scaffold_210724 (68685-68859) | |
| 29-268, gnl|panTro1|chr12 (57913638-57913812) | |
| 29-268, gnl|rheMac2|chr13 (55939785-55939944) | |
| 29-268, gnl|rn3|chr14 (110197121-110196948) | |
| 29-268, gnl|tetNig1|chr17 (10724191-10724042) | |
| 29-268, gnl|xenTro1|scaffold_392 (314883-315056) | |
| 416-828, gnl|bosTau2|chr11 (20630461-20630049) | |
| 416-828, gnl|Hg17|chr2 (55737833-55737421) | |
| 416-828, gnl|Mm7|chr11 (29139950-29140362) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-268, gnl|bosTau2|chr11 (20649608-20649369) | |
| 29-268, gnl|canFam2|chr10 (59615930-59616103) | |
| 29-268, gnl|danRer3|chr20 (42162519-42162685) | |
| 29-268, gnl|dasNov1|scaffold_169508 (4603-4777) | |
| 29-268, gnl|echTel1|scaffold_280310 (43671-43845) | |
| 29-268, gnl|fr1|chrUn (46926898-46927066) | |
| 29-268, gnl|galGal2|chr3 (2214964-2214798) | |
| 29-268, gnl|hg17|chr2 (55755914-55756088) | |
| 29-268, gnl|Hg17|chr2 (55756172-55755930) | |
| 29-268, gnl|loxAfr1|scaffold_244 (150562-150391) | |
| 29-268, gnl|mm7|chr11 (29125472-29125298) | |
| 29-268, gnl|Mm7|chr11 (29125215-29125454) | |
| 29-268, gnl|monDom2|scaffold_1 (18579970-18580152) | |
| 29-268, gnl|oryCun1|scaffold_210724 (68685-68859) | |
| 29-268, gnl|panTro1|chr12 (57913638-57913812) | |
| 29-268, gnl|rheMac2|chr13 (55939785-55939944) | |
| 29-268, gnl|rn3|chr14 (110197121-110196948) | |
| 29-268, gnl|tetNig1|chr17 (10724191-10724042) | |
| 29-268, gnl|xenTro1|scaffold_392 (314883-315056) | |
| 416-828, gnl|bosTau2|chr11 (20630461-20630049) | |
| 416-828, gnl|Hg17|chr2 (55737833-55737421) | |
| 416-828, gnl|Mm7|chr11 (29139950-29140362) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| thg (0.126791) |