Non-Coding RNA Search

Ss1.1-Liv1-LVR010038C10.5

Sequence:


               
               TTTGACCGGGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACA
GAACTTGGCTGCCTGAGGGCAATCATTCTGTTCAATCCAGATGCCAAGGGCCTCTCCAAC
CCCAGTGAGGTTGAGGTCCTGCGGGAGAAAGTGTACGCGTCACTGGAGACCTATTGCAAA
CAGAAGTACCCTGAGCAGCAGGGACGGTTCGCCAAGCTGCTGCTGCGTCTTCCTGCTCTC
AGGTCCATAGGCCTTAAGTGTCTAGAGCATCTGTTTTTCTTCAAGCTCATTGGCGACACC
CCCATCGACACCTTCCTCATGGAGATGCTTGAGGCTCCCCACCAGCTGGCCTGAGCCCAC
ACCCAGACGTGGTGTTCCTCACGCTTGAGGAGGGCACATCAGAGAGGGACTCCGAGCGTT
GGGGCAGGGTGGGGAGGGGCGGTGTTCCCAGGATCTGGTGGGGTGAGCAGTACAGGGCAG
AACCGAGACCTCCACGTGGGGTGGTGGGTCTGTAAATCCTCCAAGGGTTTGCTTGACATC
CCAAGCCAGAGAGCACCCCCCATCACTGCGAGGGCTGGACCTGGCCCTGCAGTGGCCTCG
AGTCTCTGCATTCGTCTGGGTCTGCCATGCTTTGGGGTACTTTCTCACCCCCTGCCTGAA
AAGACCTCTCCTTCCCCCAGCACAAAGCACTGGTCGTGCTCCCAGGACCTTGCTTCCTTC
CCATCTTGCCTCACTTAGCCCCCCATCTGAAGAGTGGAAATGGGAACTCCCCCAGAGATA
GATATTGGGGGGCAGGCCCCCCAGACTGATGGACATGGGAGTAAGGCTCTGACAGGCCTT
CCTCTAACCAAGCCTGGCAGATGGGGGCTTGGTTAGAGGAAGAAGGGGAGGGGGGTGCTG
CTGTTGTCTCCTGTCCAGAGTCCCCTCTCACACTTCACCTCCTTCTGCAGTCAGACTGAA
AAATAAAAAGGTGGTGGTGGTTAAGGGGAGGGTGGAGATGTAGGAACCCATCTGCTATTT
TTAATTTCCTCTGAGGATAGAGACTTGCAGTTAGACTCAAAGAAGTACTGTACTTTCCCA
GGTTGACTAAGAAATGCCAGTGGTGGAGGTGGTATTTGGGAAAGGCAGGGCCCTGAGATG
TCTGTCCCTGGGGCTCTTCAGCACCTGGCCTTGCCCCCCCCAGCCCCTCCTGTCTAACTT
TGGGAAGGGGCCTGGGCTGTGATGGCAGGGCAGGGGTGCTCCGGTGAGTAGTCCTCACGC
CCTAACCGTCACAGCTCTGCCCCCAGCCCTGGGCGCACACAGTGTAGGCCGCGAACACAG
GATCCTGGCCTGAGACTTGAGGGGGGTTGGCCCGCCAGCAGAGACGGGCTGCAGGGGCTG
CATGATTTTTGCCCTGCAGCTCTTCTCTCCGGGGTTCCTTTCCCCTCTCTTTCACTCACT
TAAAGTCGCTTTCAAATTAAAATCGCTGTTTTCAGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGACCGGGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACA
GAACTTGGCTGCCTGAGGGCAATCATTCTGTTCAATCCAGATGCCAAGGGCCTCTCCAAC
CCCAGTGAGGTTGAGGTCCTGCGGGAGAAAGTGTACGCGTCACTGGAGACCTATTGCAAA
CAGAAGTACCCTGAGCAGCAGGGACGGTTCGCCAAGCTGCTGCTGCGTCTTCCTGCTCTC
AGGTCCATAGGCCTTAAGTGTCTAGAGCATCTGTTTTTCTTCAAGCTCATTGGCGACACC
CCCATCGACACCTTCCTCATGGAGATGCTTGAGGCTCCCCACCAGCTGGCCTGAGCCCAC
ACCCAGACGTGGTGTTCCTCACGCTTGAGGAGGGCACATCAGAGAGGGACTCCGAGCGTT
GGGGCAGGGTGGGGAGGGGCGGTGTTCCCAGGATCTGGTGGGGTGAGCAGTACAGGGCAG
AACCGAGACCTCCACGTGGGGTGGTGGGTCTGTAAATCCTCCAAGGGTTTGCTTGACATC
CCAAGCCAGAGAGCACCCCCCATCACTGCGAGGGCTGGACCTGGCCCTGCAGTGGCCTCG
AGTCTCTGCATTCGTCTGGGTCTGCCATGCTTTGGGGTACTTTCTCACCCCCTGCCTGAA
AAGACCTCTCCTTCCCCCAGCACAAAGCACTGGTCGTGCTCCCAGGACCTTGCTTCCTTC
CCATCTTGCCTCACTTAGCCCCCCATCTGAAGAGTGGAAATGGGAACTCCCCCAGAGATA
GATATTGGGGGGCAGGCCCCCCAGACTGATGGACATGGGAGTAAGGCTCTGACAGGCCTT
CCTCTAACCAAGCCTGGCAGATGGGGGCTTGGTTAGAGGAAGAAGGGGAGGGGGGTGCTG
CTGTTGTCTCCTGTCCAGAGTCCCCTCTCACACTTCACCTCCTTCTGCAGTCAGACTGAA
AAATAAAAAGGTGGTGGTGGTTAAGGGGAGGGTGGAGATGTAGGAACCCATCTGCTATTT
TTAATTTCCTCTGAGGATAGAGACTTGCAGTTAGACTCAAAGAAGTACTGTACTTTCCCA
GGTTGACTAAGAAATGCCAGTGGTGGAGGTGGTATTTGGGAAAGGCAGGGCCCTGAGATG
TCTGTCCCTGGGGCTCTTCAGCACCTGGCCTTGCCCCCCCCAGCCCCTCCTGTCTAACTT
TGGGAAGGGGCCTGGGCTGTGATGGCAGGGCAGGGGTGCTCCGGTGAGTAGTCCTCACGC
CCTAACCGTCACAGCTCTGCCCCCAGCCCTGGGCGCACACAGTGTAGGCCGCGAACACAG
GATCCTGGCCTGAGACTTGAGGGGGGTTGGCCCGCCAGCAGAGACGGGCTGCAGGGGCTG
CATGATTTTTGCCCTGCAGCTCTTCTCTCCGGGGTTCCTTTCCCCTCTCTTTCACTCACT
TAAAGTCGCTTTCAAATTAAAATCGCTGTTTTCAGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24210302|emb|CAD54660.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24210302|emb|CAD54660.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1191-1300, - strand, RNAz p=0.999942
               

               
               1340-1477, + strand, RNAz p=0.982669

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1191-1300, - strand, RNAz p=0.999942
               

               
               1340-1477, + strand, RNAz p=0.982669

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021976, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021976, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               206-358, gnl|bosTau2|chr11 (85126371-85126523)
               

               
               206-358, gnl|canFam2|chr9 (53913491-53913652)
               

               
               206-358, gnl|danRer3|chr20 (42541526-42541675)
               

               
               206-358, gnl|dasNov1|scaffold_39224 (8545-8706)
               

               
               206-358, gnl|echTel1|scaffold_220816 (6105-6276)
               

               
               206-358, gnl|fr1|chrUn (63675199-63675048)
               

               
               206-358, gnl|galGal2|chr17 (3073087-3072930)
               

               
               206-358, gnl|hg17|chr9 (134554245-134554410)
               

               
               206-358, gnl|Hg17|chr9 (134554257-134554409)
               

               
               206-358, gnl|loxAfr1|scaffold_24101 (4047-3887)
               

               
               206-358, gnl|mm7|chr2 (27766839-27767004)
               

               
               206-358, gnl|Mm7|chr2 (27766851-27767003)
               

               
               206-358, gnl|monDom2|scaffold_51 (11468617-11468780)
               

               
               206-358, gnl|oryCun1|scaffold_166833 (6711-6546)
               

               
               206-358, gnl|panTro1|chr11 (119430141-119430306)
               

               
               206-358, gnl|rheMac2|chr15 (3859143-3858978)
               

               
               206-358, gnl|rn3|chr3 (6689364-6689529)
               

               
               206-358, gnl|tetNig1|chrUn_random (10510414-10510564)
               

               
               206-358, gnl|xenTro1|scaffold_95 (1681642-1681482)
               


               
               1191-1477, gnl|bosTau2|chr23 (5565288-5565565)
               

               
               1191-1477, gnl|Hg17|chr6 (33269629-33269343)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-358, gnl|bosTau2|chr11 (85126371-85126523)
               

               
               206-358, gnl|canFam2|chr9 (53913491-53913652)
               

               
               206-358, gnl|danRer3|chr20 (42541526-42541675)
               

               
               206-358, gnl|dasNov1|scaffold_39224 (8545-8706)
               

               
               206-358, gnl|echTel1|scaffold_220816 (6105-6276)
               

               
               206-358, gnl|fr1|chrUn (63675199-63675048)
               

               
               206-358, gnl|galGal2|chr17 (3073087-3072930)
               

               
               206-358, gnl|hg17|chr9 (134554245-134554410)
               

               
               206-358, gnl|Hg17|chr9 (134554257-134554409)
               

               
               206-358, gnl|loxAfr1|scaffold_24101 (4047-3887)
               

               
               206-358, gnl|mm7|chr2 (27766839-27767004)
               

               
               206-358, gnl|Mm7|chr2 (27766851-27767003)
               

               
               206-358, gnl|monDom2|scaffold_51 (11468617-11468780)
               

               
               206-358, gnl|oryCun1|scaffold_166833 (6711-6546)
               

               
               206-358, gnl|panTro1|chr11 (119430141-119430306)
               

               
               206-358, gnl|rheMac2|chr15 (3859143-3858978)
               

               
               206-358, gnl|rn3|chr3 (6689364-6689529)
               

               
               206-358, gnl|tetNig1|chrUn_random (10510414-10510564)
               

               
               206-358, gnl|xenTro1|scaffold_95 (1681642-1681482)
               


               
               1191-1477, gnl|bosTau2|chr23 (5565288-5565565)
               

               
               1191-1477, gnl|Hg17|chr6 (33269629-33269343)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nep (0.183925)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               pty (0.142714)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1191-1300, - strand, RNAz p=0.999942
	1340-1477, + strand, RNAz p=0.982669

	206-358, gnl\|bosTau2\|chr11 (85126371-85126523)
	206-358, gnl\|canFam2\|chr9 (53913491-53913652)
	206-358, gnl\|danRer3\|chr20 (42541526-42541675)
	206-358, gnl\|dasNov1\|scaffold_39224 (8545-8706)
	206-358, gnl\|echTel1\|scaffold_220816 (6105-6276)
	206-358, gnl\|fr1\|chrUn (63675199-63675048)
	206-358, gnl\|galGal2\|chr17 (3073087-3072930)
	206-358, gnl\|hg17\|chr9 (134554245-134554410)
	206-358, gnl\|Hg17\|chr9 (134554257-134554409)
	206-358, gnl\|loxAfr1\|scaffold_24101 (4047-3887)
	206-358, gnl\|mm7\|chr2 (27766839-27767004)
	206-358, gnl\|Mm7\|chr2 (27766851-27767003)
	206-358, gnl\|monDom2\|scaffold_51 (11468617-11468780)
	206-358, gnl\|oryCun1\|scaffold_166833 (6711-6546)
	206-358, gnl\|panTro1\|chr11 (119430141-119430306)
	206-358, gnl\|rheMac2\|chr15 (3859143-3858978)
	206-358, gnl\|rn3\|chr3 (6689364-6689529)
	206-358, gnl\|tetNig1\|chrUn_random (10510414-10510564)
	206-358, gnl\|xenTro1\|scaffold_95 (1681642-1681482)

	1191-1477, gnl\|bosTau2\|chr23 (5565288-5565565)
	1191-1477, gnl\|Hg17\|chr6 (33269629-33269343)

	nep (0.183925)
	pty (0.142714)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)