Non-Coding RNA Search

Ss1.1-Liv1-LVR010039A01.5

Sequence:


               
               GAGCTTGCGGGGAAGATGGAGTATCCCGCGTTGGGCTCAGTGGAAGCAGCGGACAGCGGC
GTGGCCCAGCTATACAACAGCTCGGAGGAGCGGGAGGGCCGGGAGCTGGATGCGCTGCGC
TTCGACCGCGAGAGGGCGCGCCGCCTCTGGGAAGCAGTGTCCGGGGCCCAACCAGTGGGG
AGGGAGGCAGTGGAACACATGATCCAGAAGAACCAGTGTCTCTTTACCAATACCCAGTGT
AAGGTTTGCTGCGCCTTGCTCATTTCTGAGTCCCAGAAGCTGGCACACTACCAGAGCAAA
AAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACATTAAAGGGG
GAAACGAAGAAGCTAGACTCAGATCAGGTAATCCAGCTGCCATGTTGAGACTGCTCGATT
CCTGATGAAGCCAGCAGGCAGGTTGGTGTGGTGGAAAGAGCGTGGGCTTTGAGTCAGATC
AACTTGGCTTCAAATCTCCGCCCTGTCATGTGACTCGGGCAAGTCTCGTGACTTTTCTGA
GCCTTGACTTCTTCCTCTATAAAAATGAGGTTAGGAGTTCCCGTCGTGGCACAGTGGTTA
ACGAATCCGACTAGGAACCATGAGGTTGCGGGTGCGGTCCCTGCCCTTGTTCAGTGGGGC
GTTGCCATGAGCTGCGGTAGACGCGGCTCGGATCCCCCGTTGCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTTGCGGGGAAGATGGAGTATCCCGCGTTGGGCTCAGTGGAAGCAGCGGACAGCGGC
GTGGCCCAGCTATACAACAGCTCGGAGGAGCGGGAGGGCCGGGAGCTGGATGCGCTGCGC
TTCGACCGCGAGAGGGCGCGCCGCCTCTGGGAAGCAGTGTCCGGGGCCCAACCAGTGGGG
AGGGAGGCAGTGGAACACATGATCCAGAAGAACCAGTGTCTCTTTACCAATACCCAGTGT
AAGGTTTGCTGCGCCTTGCTCATTTCTGAGTCCCAGAAGCTGGCACACTACCAGAGCAAA
AAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACATTAAAGGGG
GAAACGAAGAAGCTAGACTCAGATCAGGTAATCCAGCTGCCATGTTGAGACTGCTCGATT
CCTGATGAAGCCAGCAGGCAGGTTGGTGTGGTGGAAAGAGCGTGGGCTTTGAGTCAGATC
AACTTGGCTTCAAATCTCCGCCCTGTCATGTGACTCGGGCAAGTCTCGTGACTTTTCTGA
GCCTTGACTTCTTCCTCTATAAAAATGAGGTTAGGAGTTCCCGTCGTGGCACAGTGGTTA
ACGAATCCGACTAGGAACCATGAGGTTGCGGGTGCGGTCCCTGCCCTTGTTCAGTGGGGC
GTTGCCATGAGCTGCGGTAGACGCGGCTCGGATCCCCCGTTGCTGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61878585|ref|XP_587215.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61878585|ref|XP_587215.1|

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-190, gnl|bosTau2|chr7 (26626318-26626507)
               

               
               1-190, gnl|canFam2|chr4 (39494569-39494367)
               

               
               1-190, gnl|dasNov1|scaffold_238145 (3014-3216)
               

               
               1-190, gnl|echTel1|scaffold_310346 (1278-1101)
               

               
               1-190, gnl|hg17|chr5 (176382324-176382526)
               

               
               1-190, gnl|Hg17|chr5 (176382331-176382520)
               

               
               1-190, gnl|mm7|chr13 (54187713-54187914)
               

               
               1-190, gnl|Mm7|chr13 (54187722-54187908)
               

               
               1-190, gnl|oryCun1|scaffold_81394 (5486-5284)
               

               
               1-190, gnl|panTro1|chr4 (183840740-183840942)
               

               
               1-190, gnl|rheMac2|chr6 (173516436-173516638)
               

               
               1-190, gnl|rn3|chr17 (15575502-15575301)
               


               
               292-570, gnl|bosTau2|chr7 (26634592-26634869)
               

               
               292-570, gnl|Hg17|chr5 (176401382-176401645)
               

               
               292-570, gnl|Mm7|chr13 (54196065-54196340)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-190, gnl|bosTau2|chr7 (26626318-26626507)
               

               
               1-190, gnl|canFam2|chr4 (39494569-39494367)
               

               
               1-190, gnl|dasNov1|scaffold_238145 (3014-3216)
               

               
               1-190, gnl|echTel1|scaffold_310346 (1278-1101)
               

               
               1-190, gnl|hg17|chr5 (176382324-176382526)
               

               
               1-190, gnl|Hg17|chr5 (176382331-176382520)
               

               
               1-190, gnl|mm7|chr13 (54187713-54187914)
               

               
               1-190, gnl|Mm7|chr13 (54187722-54187908)
               

               
               1-190, gnl|oryCun1|scaffold_81394 (5486-5284)
               

               
               1-190, gnl|panTro1|chr4 (183840740-183840942)
               

               
               1-190, gnl|rheMac2|chr6 (173516436-173516638)
               

               
               1-190, gnl|rn3|chr17 (15575502-15575301)
               


               
               292-570, gnl|bosTau2|chr7 (26634592-26634869)
               

               
               292-570, gnl|Hg17|chr5 (176401382-176401645)
               

               
               292-570, gnl|Mm7|chr13 (54196065-54196340)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ute (0.132784)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	1-190, gnl\|bosTau2\|chr7 (26626318-26626507)
	1-190, gnl\|canFam2\|chr4 (39494569-39494367)
	1-190, gnl\|dasNov1\|scaffold_238145 (3014-3216)
	1-190, gnl\|echTel1\|scaffold_310346 (1278-1101)
	1-190, gnl\|hg17\|chr5 (176382324-176382526)
	1-190, gnl\|Hg17\|chr5 (176382331-176382520)
	1-190, gnl\|mm7\|chr13 (54187713-54187914)
	1-190, gnl\|Mm7\|chr13 (54187722-54187908)
	1-190, gnl\|oryCun1\|scaffold_81394 (5486-5284)
	1-190, gnl\|panTro1\|chr4 (183840740-183840942)
	1-190, gnl\|rheMac2\|chr6 (173516436-173516638)
	1-190, gnl\|rn3\|chr17 (15575502-15575301)

	292-570, gnl\|bosTau2\|chr7 (26634592-26634869)
	292-570, gnl\|Hg17\|chr5 (176401382-176401645)
	292-570, gnl\|Mm7\|chr13 (54196065-54196340)