Ss1.1-Liv1-LVR010040H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGTCCAGCAGGGTTCTGCGCGGAGGCCGGGGGCGGGGCGGCGCCGGCCTTGATTGAGGT GCCACGGCTGCTTCGGCTCGGCGGAGAGGACGGATTTTGTAAGGCGGCGGCTGCGACAGG CGCGGATCTTGTACCAGGTGCCCTTGTGAAATAAGAATCAGCTCTACAATGACAACCTAT TTGGAATTCATCCAGCAAAATGAAGAACGAGATGGAGTCCGATTTAGTTGGAATGTTTGG CCATCAAGTCGACTAGAAGCTACAAGAATGGTTGTTCCAGTAGCAGCCCTATTCACACCA CTAAAGGAGAGACCAGATTTGCCACCTATTCAATATGAACCTGTTCTGTGTAGTAGGACC ACTTGCCGTGCAGTTTTGAATCCTTTATGTCAAGTGGATTATCGAGCAAAACTCTGGGCT TGCAACTTTTGTTATCAAAGGAATCAGTTTCCACCTACTTATGCTGGTATATCTGAACTG AATCAACCTGCTGAACTTTTACCTCAGTTTTCTAGCATTGAATATGTAGTTCTGCGTGGA CCTCAGATGCCTTTGATATTCCTCTATGTGGTTGATACTTGCATGGAAGATGAAGATTTG CAAGCCCTGAAAGAATCTATGCAGATGTCATTAAGTCTTTTACCACCTACTGCTTTGGTC GGCCTAATTACTTTTGGTAGAATGGTGCAGGTTCATGAGCTTGGATGTGAGGGCATTTCA AAAAGCTATGTCTTCAAGGGAACAAAAGATCTGTCTGCCAAACAACTGCAGGAAATGCTG GGACTCTCTAAAGTACCATTTACTCAAGCAACACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGTCCAGCAGGGTTCTGCGCGGAGGCCGGGGGCGGGGCGGCGCCGGCCTTGATTGAGGT GCCACGGCTGCTTCGGCTCGGCGGAGAGGACGGATTTTGTAAGGCGGCGGCTGCGACAGG CGCGGATCTTGTACCAGGTGCCCTTGTGAAATAAGAATCAGCTCTACAATGACAACCTAT TTGGAATTCATCCAGCAAAATGAAGAACGAGATGGAGTCCGATTTAGTTGGAATGTTTGG CCATCAAGTCGACTAGAAGCTACAAGAATGGTTGTTCCAGTAGCAGCCCTATTCACACCA CTAAAGGAGAGACCAGATTTGCCACCTATTCAATATGAACCTGTTCTGTGTAGTAGGACC ACTTGCCGTGCAGTTTTGAATCCTTTATGTCAAGTGGATTATCGAGCAAAACTCTGGGCT TGCAACTTTTGTTATCAAAGGAATCAGTTTCCACCTACTTATGCTGGTATATCTGAACTG AATCAACCTGCTGAACTTTTACCTCAGTTTTCTAGCATTGAATATGTAGTTCTGCGTGGA CCTCAGATGCCTTTGATATTCCTCTATGTGGTTGATACTTGCATGGAAGATGAAGATTTG CAAGCCCTGAAAGAATCTATGCAGATGTCATTAAGTCTTTTACCACCTACTGCTTTGGTC GGCCTAATTACTTTTGGTAGAATGGTGCAGGTTCATGAGCTTGGATGTGAGGGCATTTCA AAAAGCTATGTCTTCAAGGGAACAAAAGATCTGTCTGCCAAACAACTGCAGGAAATGCTG GGACTCTCTAAAGTACCATTTACTCAAGCAACACGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 148-389, gnl|bosTau2|chr21 (32309048-32309290) | |
| 148-389, gnl|Hg17|chr14 (38635095-38634853) | |
| 148-389, gnl|Mm7|chr12 (56942313-56942071) | |
| 166-383, gnl|bosTau2|chr13 (24263679-24263896) | |
| 166-383, gnl|Hg17|chr20 (18439477-18439694) | |
| 166-383, gnl|Mm7|chr2 (144300075-144300292) | |
| 534-775, gnl|bosTau2|chr21 (32311937-32312178) | |
| 534-775, gnl|canFam2|chr8 (20287287-20287538) | |
| 534-775, gnl|danRer3|chr17 (5595426-5595183) | |
| 534-775, gnl|dasNov1|scaffold_63944 (3386-3146) | |
| 534-775, gnl|echTel1|scaffold_285631 (1923-1674) | |
| 534-775, gnl|fr1|chrUn (93269630-93269378) | |
| 534-775, gnl|galGal2|chr5 (34445087-34445338) | |
| 534-775, gnl|hg17|chr14 (38630419-38630671) | |
| 534-775, gnl|Hg17|chr14 (38630669-38630428) | |
| 534-775, gnl|loxAfr1|scaffold_184265 (648-900) | |
| 534-775, gnl|mm7|chr12 (56936890-56937139) | |
| 534-775, gnl|Mm7|chr12 (56937137-56936896) | |
| 534-775, gnl|monDom2|scaffold_8 (89468554-89468301) | |
| 534-775, gnl|oryCun1|scaffold_177971 (17839-17587) | |
| 534-775, gnl|panTro1|chr15 (37984314-37984567) | |
| 534-775, gnl|rheMac2|chr7 (102065022-102065274) | |
| 534-775, gnl|rn3|chr6 (79699402-79699651) | |
| 534-775, gnl|tetNig1|chrUn_random (82985372-82985611) | |
| 534-775, gnl|xenTro1|scaffold_271 (314348-314599) | |
| 550-772, gnl|bosTau2|chr13 (24268535-24268757) | |
| 550-772, gnl|canFam2|chr24 (7691192-7691001) | |
| 550-772, gnl|danRer3|chr6 (1640342-1640529) | |
| 550-772, gnl|dasNov1|scaffold_63944 (3125-3315) | |
| 550-772, gnl|echTel1|scaffold_285631 (1659-1843) | |
| 550-772, gnl|fr1|chrUn (93269362-93269547) | |
| 550-772, gnl|galGal2|chr14 (16862746-16862929) | |
| 550-772, gnl|hg17|chr20 (18453054-18453245) | |
| 550-772, gnl|Hg17|chr20 (18453092-18453314) | |
| 550-772, gnl|loxAfr1|scaffold_5577 (103963-104157) | |
| 550-772, gnl|mm7|chr2 (144307597-144307788) | |
| 550-772, gnl|Mm7|chr2 (144307635-144307857) | |
| 550-772, gnl|monDom2|scaffold_1 (53231231-53231424) | |
| 550-772, gnl|oryCun1|scaffold_177971 (17585-17756) | |
| 550-772, gnl|panTro1|chr21_random (2248244-2248053) | |
| 550-772, gnl|rheMac2|chr10 (51853640-51853831) | |
| 550-772, gnl|rn3|chr3 (133020393-133020584) | |
| 550-772, gnl|tetNig1|chr18 (4773005-4772819) | |
| 550-772, gnl|xenTro1|scaffold_582 (344113-343922) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-389, gnl|bosTau2|chr21 (32309048-32309290) | |
| 148-389, gnl|Hg17|chr14 (38635095-38634853) | |
| 148-389, gnl|Mm7|chr12 (56942313-56942071) | |
| 166-383, gnl|bosTau2|chr13 (24263679-24263896) | |
| 166-383, gnl|Hg17|chr20 (18439477-18439694) | |
| 166-383, gnl|Mm7|chr2 (144300075-144300292) | |
| 534-775, gnl|bosTau2|chr21 (32311937-32312178) | |
| 534-775, gnl|canFam2|chr8 (20287287-20287538) | |
| 534-775, gnl|danRer3|chr17 (5595426-5595183) | |
| 534-775, gnl|dasNov1|scaffold_63944 (3386-3146) | |
| 534-775, gnl|echTel1|scaffold_285631 (1923-1674) | |
| 534-775, gnl|fr1|chrUn (93269630-93269378) | |
| 534-775, gnl|galGal2|chr5 (34445087-34445338) | |
| 534-775, gnl|hg17|chr14 (38630419-38630671) | |
| 534-775, gnl|Hg17|chr14 (38630669-38630428) | |
| 534-775, gnl|loxAfr1|scaffold_184265 (648-900) | |
| 534-775, gnl|mm7|chr12 (56936890-56937139) | |
| 534-775, gnl|Mm7|chr12 (56937137-56936896) | |
| 534-775, gnl|monDom2|scaffold_8 (89468554-89468301) | |
| 534-775, gnl|oryCun1|scaffold_177971 (17839-17587) | |
| 534-775, gnl|panTro1|chr15 (37984314-37984567) | |
| 534-775, gnl|rheMac2|chr7 (102065022-102065274) | |
| 534-775, gnl|rn3|chr6 (79699402-79699651) | |
| 534-775, gnl|tetNig1|chrUn_random (82985372-82985611) | |
| 534-775, gnl|xenTro1|scaffold_271 (314348-314599) | |
| 550-772, gnl|bosTau2|chr13 (24268535-24268757) | |
| 550-772, gnl|canFam2|chr24 (7691192-7691001) | |
| 550-772, gnl|danRer3|chr6 (1640342-1640529) | |
| 550-772, gnl|dasNov1|scaffold_63944 (3125-3315) | |
| 550-772, gnl|echTel1|scaffold_285631 (1659-1843) | |
| 550-772, gnl|fr1|chrUn (93269362-93269547) | |
| 550-772, gnl|galGal2|chr14 (16862746-16862929) | |
| 550-772, gnl|hg17|chr20 (18453054-18453245) | |
| 550-772, gnl|Hg17|chr20 (18453092-18453314) | |
| 550-772, gnl|loxAfr1|scaffold_5577 (103963-104157) | |
| 550-772, gnl|mm7|chr2 (144307597-144307788) | |
| 550-772, gnl|Mm7|chr2 (144307635-144307857) | |
| 550-772, gnl|monDom2|scaffold_1 (53231231-53231424) | |
| 550-772, gnl|oryCun1|scaffold_177971 (17585-17756) | |
| 550-772, gnl|panTro1|chr21_random (2248244-2248053) | |
| 550-772, gnl|rheMac2|chr10 (51853640-51853831) | |
| 550-772, gnl|rn3|chr3 (133020393-133020584) | |
| 550-772, gnl|tetNig1|chr18 (4773005-4772819) | |
| 550-772, gnl|xenTro1|scaffold_582 (344113-343922) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |