Ss1.1-Liv1-LVR010042A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTGCTCTTTCCTCGCTCAGCGCTCAGAGTCCGGGATCAACCCCTGGGGCTCT TCGGAAAAGCCAGCAGCCAGTTTAATCTCTCCGGGCTGAGGCGTTGCGGCTTTGGGGTGA CGAGCCCGCTGAGCGTGAGGGCTGGACTCACTGGGTGAGGCCTCCAGGTCTTGGAAGCCT CCCGGGCTACACTCCTGCCTGGAGTTCAGACCAAGCGAACTTCAAGTTCTCCACGAGAGT TCGCCAAAGTGAAAGGTGGGGAGTCGCGGGAGAGGCGGCCATCGTCGGAGCTCTGTGGGT CCCCCTAAGTGCCCCTGTGCATCTTCTGCCTTGGCGTTGTCCGGCCCCTTCCCGAGCCTG GAGGCTGACAGTTGGAAAAGGGGGCTTCTGTGAGTTGGTTAAGTCCCGTTTGGAGAGACT GAAGACCGCGATGAAACCGGAGCAGTAAGGGGCCTGGCCAACCTTCGCCGGCCCACCCTG GGCTACCGGGGCCCTTGAACCCGCCCTTCCTGATTCGCCTTTGGGCGCGCTCGAGGCAGT CTGCACTCCAGATCTGAAGGTGCCGCAGGACAAGCCATGAATAGCATGGGTGCGCTGGGT GGCGCGAGGCTGCGGTGGGCGCTGCTGGGGACGCGAGTGCCCTTCCCTGTTCTGGGCTCA CAGGGGGCCAGAGCCAAGGCCGCGATCCCCACCGCACTCCCGGCGGCCCAGACAGCGGAG GCTCCCGGAACCGGGCCTGGCGATCGGAGGCTGCGGAGCTTGAAGGAGCTTTCCGGGCCA GGGCGGCTGCGCCTCTTATTCCAACTGTTAGCACAAGGCTACGTTCTGCACTTACACCAG CTCCAGGTGCTGAACAAGGCCAAGTATGGTCCAATGTGGATAAACTATATAGGGCCTCAG ATCCATGTGAACGTGGCCAGTGCCCCACTCCTGGAGCAAGTGATGCGCCAAGAGGGCAAG TACCCAGTACGGAACGACATGGACCTGTGGAAGGAGCACCGGGACCTACAGGGCCTGACC TATGGGCCCTTCACCACGGAAGGAGAGTCATGGTACCGGCTGCGCCAGGCTCTGAACCAG CGGATGCTGAAGCCAGCTGACGCTGCGCTCTACACCAATGCTCTGAATGAGGTGGTCGAT GACTTCATGGTGCGACTGAACCAGCTTCGGGCAGAAAGCACCTTGGGGGACCACGTGCCC GACATAGCTCACCAATTCTACTTCTTCGCCTTGGAAGCTATTTGCTACATCCTGTTTGAG AAACGCATTGGCTGCCTGGAGCGCTCCATCCCCCAGGACACCAAAGCCTTCGTCAGATCT GTCGGGTTCATGTTCCAGAACTCACTCTACGCCACCTTCCTCCCCAAGTGGACGCGTCCC CTGCTGCCCTACTGGAGGCGATACCTGGATGGCTGGAATACCATCTTCTCTTTTGGGAAG AAGCTGATTGATCAGAAACTGGAGGAGATAGAGGCCCAACTGCAGGCGGGGGGCCCAGAG GAGCCCCGGATATCTGGTTACCTGCACTTTCTGCTGACCAGCGGACAGCTCAGTCCTCGT GAGGCTGAGGGCAGCTTGCCGGAGCTGCTCATGGCTGGAGTAGACACGACATCCAACACG CTGACATGGGCCCTGTACCATCTTTCAAAGAACCCAGAGATCCAGGCAGCCTTGCATGAG GAGGTGGTGGGCATGGTGCCCGCTGGGCGGGTGCCGCAGTACAAGGACTTGGCCCACATG CCTCTGCTCAAAGCTGTGCTTAAGGAGACCCTGCGCCTCTACCCTGTGGTGCCTGTGAAC TCCAGGGTCATCACAGACAAGGAAATCGAAGTTGGTGGCTTCCTCTTTCCCAAGAACACA CAGTTTGTCTTGTGCCATTATGTGGTGTCCCGGGACCCCAGCATCTTCCCTGAGCCTGAC CGCTTCCAGCCCCAGCGCTGGCTGAGGAAGAACCAGACGGATGCTCTCAAGGGCCAGCAC CCATTTGGCTCCGTGCCCTTTGGCTACGGGGTCCGGGGTTGCCTGGGCCGCAGGATTGCA GAGCTGGAGATGCAGCTGCTGCTGACAAGGCTGATCCAGCAGTATGAGGTGACTCTGGCC CCTGAGACGGGGGAAGTGACGAGTGTGGCTCGCATCGTTCTGGTTCCCAATAAGAAGGTG GGCCTGCGTTTCCTGCAGAGACAGGGATGAGCTGGACCTCTGCCCTCCTGGGGCAGCCTC CTCTCCTCCCTTGCTCCCTGGCACACGAGGCGGGAGAAAAAGGAGCTGCCAGGTGACAGA GGTTGGAGATGCTCCGTGCCTCCCTGTAGAACCCTGAGCTTTTGCTGCTTTTATTATTTT GAGCATCTCCCTCTCAGATAAAAGGCCGCCTCCATGTCACACTGCTAACCTTGGGGACTA TATGCAATAAAAGGGTTTTTACTGATAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTGCTCTTTCCTCGCTCAGCGCTCAGAGTCCGGGATCAACCCCTGGGGCTCT TCGGAAAAGCCAGCAGCCAGTTTAATCTCTCCGGGCTGAGGCGTTGCGGCTTTGGGGTGA CGAGCCCGCTGAGCGTGAGGGCTGGACTCACTGGGTGAGGCCTCCAGGTCTTGGAAGCCT CCCGGGCTACACTCCTGCCTGGAGTTCAGACCAAGCGAACTTCAAGTTCTCCACGAGAGT TCGCCAAAGTGAAAGGTGGGGAGTCGCGGGAGAGGCGGCCATCGTCGGAGCTCTGTGGGT CCCCCTAAGTGCCCCTGTGCATCTTCTGCCTTGGCGTTGTCCGGCCCCTTCCCGAGCCTG GAGGCTGACAGTTGGAAAAGGGGGCTTCTGTGAGTTGGTTAAGTCCCGTTTGGAGAGACT GAAGACCGCGATGAAACCGGAGCAGTAAGGGGCCTGGCCAACCTTCGCCGGCCCACCCTG GGCTACCGGGGCCCTTGAACCCGCCCTTCCTGATTCGCCTTTGGGCGCGCTCGAGGCAGT CTGCACTCCAGATCTGAAGGTGCCGCAGGACAAGCCATGAATAGCATGGGTGCGCTGGGT GGCGCGAGGCTGCGGTGGGCGCTGCTGGGGACGCGAGTGCCCTTCCCTGTTCTGGGCTCA CAGGGGGCCAGAGCCAAGGCCGCGATCCCCACCGCACTCCCGGCGGCCCAGACAGCGGAG GCTCCCGGAACCGGGCCTGGCGATCGGAGGCTGCGGAGCTTGAAGGAGCTTTCCGGGCCA GGGCGGCTGCGCCTCTTATTCCAACTGTTAGCACAAGGCTACGTTCTGCACTTACACCAG CTCCAGGTGCTGAACAAGGCCAAGTATGGTCCAATGTGGATAAACTATATAGGGCCTCAG ATCCATGTGAACGTGGCCAGTGCCCCACTCCTGGAGCAAGTGATGCGCCAAGAGGGCAAG TACCCAGTACGGAACGACATGGACCTGTGGAAGGAGCACCGGGACCTACAGGGCCTGACC TATGGGCCCTTCACCACGGAAGGAGAGTCATGGTACCGGCTGCGCCAGGCTCTGAACCAG CGGATGCTGAAGCCAGCTGACGCTGCGCTCTACACCAATGCTCTGAATGAGGTGGTCGAT GACTTCATGGTGCGACTGAACCAGCTTCGGGCAGAAAGCACCTTGGGGGACCACGTGCCC GACATAGCTCACCAATTCTACTTCTTCGCCTTGGAAGCTATTTGCTACATCCTGTTTGAG AAACGCATTGGCTGCCTGGAGCGCTCCATCCCCCAGGACACCAAAGCCTTCGTCAGATCT GTCGGGTTCATGTTCCAGAACTCACTCTACGCCACCTTCCTCCCCAAGTGGACGCGTCCC CTGCTGCCCTACTGGAGGCGATACCTGGATGGCTGGAATACCATCTTCTCTTTTGGGAAG AAGCTGATTGATCAGAAACTGGAGGAGATAGAGGCCCAACTGCAGGCGGGGGGCCCAGAG GAGCCCCGGATATCTGGTTACCTGCACTTTCTGCTGACCAGCGGACAGCTCAGTCCTCGT GAGGCTGAGGGCAGCTTGCCGGAGCTGCTCATGGCTGGAGTAGACACGACATCCAACACG CTGACATGGGCCCTGTACCATCTTTCAAAGAACCCAGAGATCCAGGCAGCCTTGCATGAG GAGGTGGTGGGCATGGTGCCCGCTGGGCGGGTGCCGCAGTACAAGGACTTGGCCCACATG CCTCTGCTCAAAGCTGTGCTTAAGGAGACCCTGCGCCTCTACCCTGTGGTGCCTGTGAAC TCCAGGGTCATCACAGACAAGGAAATCGAAGTTGGTGGCTTCCTCTTTCCCAAGAACACA CAGTTTGTCTTGTGCCATTATGTGGTGTCCCGGGACCCCAGCATCTTCCCTGAGCCTGAC CGCTTCCAGCCCCAGCGCTGGCTGAGGAAGAACCAGACGGATGCTCTCAAGGGCCAGCAC CCATTTGGCTCCGTGCCCTTTGGCTACGGGGTCCGGGGTTGCCTGGGCCGCAGGATTGCA GAGCTGGAGATGCAGCTGCTGCTGACAAGGCTGATCCAGCAGTATGAGGTGACTCTGGCC CCTGAGACGGGGGAAGTGACGAGTGTGGCTCGCATCGTTCTGGTTCCCAATAAGAAGGTG GGCCTGCGTTTCCTGCAGAGACAGGGATGAGCTGGACCTCTGCCCTCCTGGGGCAGCCTC CTCTCCTCCCTTGCTCCCTGGCACACGAGGCGGGAGAAAAAGGAGCTGCCAGGTGACAGA GGTTGGAGATGCTCCGTGCCTCCCTGTAGAACCCTGAGCTTTTGCTGCTTTTATTATTTT GAGCATCTCCCTCTCAGATAAAAGGCCGCCTCCATGTCACACTGCTAACCTTGGGGACTA TATGCAATAAAAGGGTTTTTACTGATAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 158-261, - strand, RNAz p=0.822586 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 158-261, - strand, RNAz p=0.822586 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-848, gnl|bosTau2|chr2 (64761206-64762053) | |
| 1-848, gnl|Hg17|chr2 (219471936-219472667) | |
| 1236-1443, gnl|bosTau2|chr2 (64801068-64801275) | |
| 1236-1443, gnl|Hg17|chr2 (219502778-219502997) | |
| 1236-1443, gnl|Mm7|chr1 (74975233-74975440) | |
| 1608-1775, gnl|bosTau2|chr2 (64802397-64802564) | |
| 1608-1775, gnl|canFam2|chr37 (28399794-28399974) | |
| 1608-1775, gnl|danRer3|chrUn (99219917-99219737) | |
| 1608-1775, gnl|dasNov1|scaffold_35703 (6810-6630) | |
| 1608-1775, gnl|echTel1|scaffold_306961 (1061-1240) | |
| 1608-1775, gnl|fr1|chrUn (40450704-40450525) | |
| 1608-1775, gnl|galGal2|chrUn (46353746-46353570) | |
| 1608-1775, gnl|hg17|chr2 (219504243-219504423) | |
| 1608-1775, gnl|Hg17|chr2 (219504248-219504415) | |
| 1608-1775, gnl|loxAfr1|scaffold_16913 (3121-2941) | |
| 1608-1775, gnl|mm7|chr1 (74976356-74976536) | |
| 1608-1775, gnl|Mm7|chr1 (74976361-74976528) | |
| 1608-1775, gnl|monDom2|scaffold_39 (1850625-1850442) | |
| 1608-1775, gnl|oryCun1|scaffold_168280 (357-558) | |
| 1608-1775, gnl|panTro1|chr13 (109668359-109668539) | |
| 1608-1775, gnl|rheMac2|chr12 (82665947-82666127) | |
| 1608-1775, gnl|rn3|chr9 (74214391-74214571) | |
| 1608-1775, gnl|tetNig1|chr2 (18233859-18233680) | |
| 1608-1775, gnl|xenTro1|scaffold_31 (1778315-1778135) | |
| 1858-2074, gnl|bosTau2|chr2 (64802933-64803149) | |
| 1858-2074, gnl|Hg17|chr2 (219504773-219504989) | |
| 1858-2074, gnl|Mm7|chr1 (74976860-74977076) | |
| 2277-2428, gnl|bosTau2|chr2 (64803431-64803584) | |
| 2277-2428, gnl|canFam2|chr37 (28400908-28401033) | |
| 2277-2428, gnl|dasNov1|scaffold_35703 (5541-5418) | |
| 2277-2428, gnl|echTel1|scaffold_306961 (2612-2775) | |
| 2277-2428, gnl|hg17|chr2 (219505396-219505522) | |
| 2277-2428, gnl|loxAfr1|scaffold_156682 (630-504) | |
| 2277-2428, gnl|mm7|chr1 (74977464-74977585) | |
| 2277-2428, gnl|Mm7|chr1 (74977415-74977575) | |
| 2277-2428, gnl|oryCun1|scaffold_168280 (1492-1598) | |
| 2277-2428, gnl|panTro1|chr13 (109669519-109669645) | |
| 2277-2428, gnl|rheMac2|chr12 (82667106-82667232) | |
| 2277-2428, gnl|rn3|chr9 (74215512-74215635) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-848, gnl|bosTau2|chr2 (64761206-64762053) | |
| 1-848, gnl|Hg17|chr2 (219471936-219472667) | |
| 1236-1443, gnl|bosTau2|chr2 (64801068-64801275) | |
| 1236-1443, gnl|Hg17|chr2 (219502778-219502997) | |
| 1236-1443, gnl|Mm7|chr1 (74975233-74975440) | |
| 1608-1775, gnl|bosTau2|chr2 (64802397-64802564) | |
| 1608-1775, gnl|canFam2|chr37 (28399794-28399974) | |
| 1608-1775, gnl|danRer3|chrUn (99219917-99219737) | |
| 1608-1775, gnl|dasNov1|scaffold_35703 (6810-6630) | |
| 1608-1775, gnl|echTel1|scaffold_306961 (1061-1240) | |
| 1608-1775, gnl|fr1|chrUn (40450704-40450525) | |
| 1608-1775, gnl|galGal2|chrUn (46353746-46353570) | |
| 1608-1775, gnl|hg17|chr2 (219504243-219504423) | |
| 1608-1775, gnl|Hg17|chr2 (219504248-219504415) | |
| 1608-1775, gnl|loxAfr1|scaffold_16913 (3121-2941) | |
| 1608-1775, gnl|mm7|chr1 (74976356-74976536) | |
| 1608-1775, gnl|Mm7|chr1 (74976361-74976528) | |
| 1608-1775, gnl|monDom2|scaffold_39 (1850625-1850442) | |
| 1608-1775, gnl|oryCun1|scaffold_168280 (357-558) | |
| 1608-1775, gnl|panTro1|chr13 (109668359-109668539) | |
| 1608-1775, gnl|rheMac2|chr12 (82665947-82666127) | |
| 1608-1775, gnl|rn3|chr9 (74214391-74214571) | |
| 1608-1775, gnl|tetNig1|chr2 (18233859-18233680) | |
| 1608-1775, gnl|xenTro1|scaffold_31 (1778315-1778135) | |
| 1858-2074, gnl|bosTau2|chr2 (64802933-64803149) | |
| 1858-2074, gnl|Hg17|chr2 (219504773-219504989) | |
| 1858-2074, gnl|Mm7|chr1 (74976860-74977076) | |
| 2277-2428, gnl|bosTau2|chr2 (64803431-64803584) | |
| 2277-2428, gnl|canFam2|chr37 (28400908-28401033) | |
| 2277-2428, gnl|dasNov1|scaffold_35703 (5541-5418) | |
| 2277-2428, gnl|echTel1|scaffold_306961 (2612-2775) | |
| 2277-2428, gnl|hg17|chr2 (219505396-219505522) | |
| 2277-2428, gnl|loxAfr1|scaffold_156682 (630-504) | |
| 2277-2428, gnl|mm7|chr1 (74977464-74977585) | |
| 2277-2428, gnl|Mm7|chr1 (74977415-74977575) | |
| 2277-2428, gnl|oryCun1|scaffold_168280 (1492-1598) | |
| 2277-2428, gnl|panTro1|chr13 (109669519-109669645) | |
| 2277-2428, gnl|rheMac2|chr12 (82667106-82667232) | |
| 2277-2428, gnl|rn3|chr9 (74215512-74215635) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cov (0.528611) | |
| cli (0.458435) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| cli (0.458435) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| jca (0.11396) | |
| jej (0.0989218) |